Wall clock time and date at job start Sat Apr 11 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42099 * 110.54590 * 2 1 4 4 O 1.42104 * 110.54346 * 223.24661 * 2 1 3 5 5 C 1.76205 * 104.44949 * 111.62378 * 2 1 3 6 6 C 1.35179 * 125.47661 * 90.01857 * 5 2 1 7 7 C 1.40285 * 107.20635 * 179.73947 * 6 5 2 8 8 C 1.37995 * 106.52569 * 0.35304 * 7 6 5 9 9 C 1.41535 * 126.10697 * 179.90683 * 8 7 6 10 10 C 1.35757 * 119.99830 * 179.43766 * 9 8 7 11 11 C 1.41285 * 119.99562 * 179.97438 * 10 9 8 12 12 O 1.21703 * 120.00405 * 0.02562 * 11 10 9 13 13 O 1.35006 * 119.99902 * 180.02562 * 11 10 9 14 14 C 1.42899 * 117.00256 * 180.02562 * 13 11 10 15 15 H 1.09003 * 109.46629 * 330.00170 * 14 13 11 16 16 C 1.50691 * 109.47021 * 209.99973 * 14 13 11 17 17 H 1.07998 * 120.00466 * 359.97438 * 16 14 13 18 18 C 1.37878 * 119.99866 * 180.02562 * 16 14 13 19 19 N 1.31512 * 120.00110 * 180.02562 * 18 16 14 20 20 Si 1.86804 * 120.00047 * 359.97438 * 18 16 14 21 21 H 1.48496 * 109.46923 * 90.00351 * 20 18 16 22 22 H 1.48495 * 109.47302 * 210.00517 * 20 18 16 23 23 H 1.48497 * 109.47176 * 330.00386 * 20 18 16 24 24 C 1.53000 * 109.46930 * 89.99579 * 14 13 11 25 25 C 1.52999 * 117.50029 * 8.75370 * 24 14 13 26 26 C 1.53002 * 117.50362 * 300.08906 * 24 14 13 27 27 O 1.34001 * 125.47692 * 269.97177 * 5 2 1 28 28 H 1.09001 * 109.47116 * 308.37552 * 1 2 3 29 29 H 1.08998 * 109.47338 * 68.37301 * 1 2 3 30 30 H 1.09003 * 109.47338 * 188.37970 * 1 2 3 31 31 H 1.07998 * 126.39501 * 359.96251 * 6 5 2 32 32 H 1.08006 * 126.73521 * 180.22248 * 7 6 5 33 33 H 1.07991 * 119.99786 * 359.71536 * 9 8 7 34 34 H 1.08004 * 120.00001 * 0.02562 * 10 9 8 35 35 H 0.97000 * 120.00232 * 179.97438 * 19 18 16 36 36 H 1.09006 * 115.54912 * 154.41390 * 24 14 13 37 37 H 1.09003 * 117.50069 * 359.97438 * 25 24 14 38 38 H 1.09003 * 117.50103 * 145.02436 * 25 24 14 39 39 H 1.08997 * 117.49901 * 214.97867 * 26 24 14 40 40 H 1.08998 * 117.49435 * 359.97370 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9117 5 6 2.2536 -0.6288 1.5862 6 6 2.4497 -1.9321 1.8867 7 6 2.7879 -1.9981 3.2466 8 6 2.7725 -0.7013 3.7183 9 6 3.0527 -0.2927 5.0441 10 6 3.0122 1.0243 5.3713 11 6 3.2913 1.4321 6.6949 12 8 3.5686 0.6029 7.5415 13 8 3.2506 2.7417 7.0205 14 6 3.5442 3.0824 8.3769 15 1 3.2445 2.2631 9.0303 16 6 2.7887 4.3298 8.7562 17 1 2.1487 4.8143 8.0338 18 6 2.9154 4.8533 10.0254 19 7 2.2557 5.9417 10.3567 20 14 4.0231 4.0159 11.2750 21 1 5.3943 4.5771 11.1755 22 1 3.4912 4.2477 12.6419 23 1 4.0642 2.5570 11.0008 24 6 5.0465 3.3306 8.5265 25 6 5.8849 3.3825 7.2477 26 6 5.9909 2.1764 8.1843 27 8 2.4482 0.1082 2.6883 28 1 -0.3633 0.6380 0.8057 29 1 -0.3634 0.3787 -0.9553 30 1 -0.3634 -1.0167 0.1498 31 1 2.3657 -2.7663 1.2061 32 1 3.0137 -2.8892 3.8136 33 1 3.3030 -1.0280 5.7942 34 1 2.7657 1.7600 4.6201 35 1 2.3445 6.3098 11.2498 36 1 5.3348 3.9911 9.3444 37 1 5.3662 3.2395 6.2997 38 1 6.7249 4.0768 7.2244 39 1 6.9004 2.0778 8.7768 40 1 5.5418 1.2401 7.8530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345534428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:52 Heat of formation + Delta-G solvation = -77.417610 kcal Electronic energy + Delta-G solvation = -26567.131809 eV Core-core repulsion = 22443.773307 eV Total energy + Delta-G solvation = -4123.358502 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.090 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -43.05787 -40.31241 -37.63244 -37.21889 -36.47718 -35.19558 -34.47462 -33.65973 -32.77525 -30.26842 -29.83781 -28.66370 -25.40543 -22.98044 -22.62308 -21.90595 -21.60309 -20.16754 -19.79906 -19.29283 -18.48534 -17.60604 -17.17432 -16.88739 -16.35018 -16.22775 -16.16029 -15.88734 -15.63230 -14.86409 -14.35065 -13.90319 -13.79435 -13.72466 -13.58438 -13.49169 -13.10947 -12.89244 -12.64923 -12.59982 -12.51125 -12.08508 -11.91500 -11.80102 -11.52584 -11.45658 -11.15910 -10.92907 -10.78236 -10.57534 -10.28859 -10.22517 -9.92477 -9.65596 -9.36466 -8.83883 -8.71844 -8.66326 -6.25397 -4.28176 -0.60379 -0.13171 1.23335 2.02965 2.17747 2.61314 3.16113 3.27405 3.28623 3.32649 3.35010 3.40314 3.73994 4.24520 4.24894 4.27762 4.37848 4.47673 4.54312 4.86310 4.94441 5.02745 5.07421 5.12474 5.20121 5.37958 5.49982 5.54058 5.65564 5.69144 5.84237 5.97035 6.18047 6.22480 6.36600 6.45043 6.69891 6.73215 6.82222 7.21039 7.44413 8.10646 8.48214 8.81522 9.31358 10.86281 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.021037 B = 0.002374 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.655118 B =11791.506263 C =12243.511510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 2.531 3.469 3 O -0.917 6.917 4 O -0.919 6.919 5 C -0.564 4.564 6 C -0.090 4.090 7 C -0.194 4.194 8 C 0.063 3.937 9 C -0.027 4.027 10 C -0.136 4.136 11 C 0.483 3.517 12 O -0.511 6.511 13 O -0.323 6.323 14 C 0.221 3.779 15 H 0.052 0.948 16 C -0.520 4.520 17 H 0.088 0.912 18 C 0.081 3.919 19 N -0.886 5.886 20 Si 0.873 3.127 21 H -0.274 1.274 22 H -0.288 1.288 23 H -0.256 1.256 24 C -0.165 4.165 25 C -0.171 4.171 26 C -0.207 4.207 27 O -0.108 6.108 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.134 0.866 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.170 0.830 34 H 0.147 0.853 35 H 0.270 0.730 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.527 -16.822 -19.430 25.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.703 3.297 3 O -0.914 6.914 4 O -0.916 6.916 5 C -0.694 4.694 6 C -0.111 4.111 7 C -0.213 4.213 8 C 0.009 3.991 9 C -0.045 4.045 10 C -0.155 4.155 11 C 0.329 3.671 12 O -0.404 6.404 13 O -0.238 6.238 14 C 0.166 3.834 15 H 0.070 0.930 16 C -0.558 4.558 17 H 0.106 0.894 18 C -0.122 4.122 19 N -0.523 5.523 20 Si 0.701 3.299 21 H -0.200 1.200 22 H -0.215 1.215 23 H -0.180 1.180 24 C -0.183 4.183 25 C -0.208 4.208 26 C -0.244 4.244 27 O -0.002 6.002 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.189 0.811 32 H 0.186 0.814 33 H 0.187 0.813 34 H 0.165 0.835 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.937 -16.299 -19.573 25.544 hybrid contribution 0.298 -0.777 1.650 1.848 sum -1.640 -17.076 -17.923 24.809 Atomic orbital electron populations 1.30196 1.24184 1.12514 1.12617 1.04986 0.78294 0.74516 0.71867 1.93638 1.77342 1.35661 1.84755 1.93644 1.78112 1.62547 1.57344 1.35529 1.23309 1.00590 1.09977 1.21851 0.96868 0.95762 0.96594 1.22507 1.06597 0.97104 0.95115 1.20475 1.00686 0.89309 0.88585 1.20767 0.95970 0.97275 0.90476 1.21843 1.00571 0.97019 0.96029 1.19733 0.75248 0.82992 0.89101 1.90829 1.44599 1.53499 1.51455 1.86278 1.78752 1.23620 1.35117 1.20127 0.89645 0.97742 0.75843 0.93034 1.20710 1.27595 1.08431 0.99041 0.89357 1.24724 0.95460 0.94517 0.97532 1.69836 1.41348 1.20409 1.20709 0.87044 0.80669 0.81497 0.80670 1.20010 1.21510 1.18012 1.23466 0.94828 1.00522 0.99519 1.22772 1.02169 1.00630 0.95217 1.23259 1.01963 0.94410 1.04738 1.84257 1.65718 1.35060 1.15148 0.84312 0.84296 0.84690 0.81125 0.81427 0.81321 0.83480 0.92026 0.87420 0.88898 0.89549 0.89913 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.67 10.80 101.05 1.09 -0.58 16 2 S 2.53 17.53 5.94 -107.50 -0.64 16.89 16 3 O -0.92 -10.38 17.95 -58.52 -1.05 -11.43 16 4 O -0.92 -8.37 17.69 -57.54 -1.02 -9.38 16 5 C -0.56 -5.08 6.96 29.64 0.21 -4.87 16 6 C -0.09 -0.71 10.49 -39.90 -0.42 -1.13 16 7 C -0.19 -1.64 10.90 -38.90 -0.42 -2.07 16 8 C 0.06 0.68 6.84 -38.41 -0.26 0.42 16 9 C -0.03 -0.31 9.39 -39.21 -0.37 -0.68 16 10 C -0.14 -1.94 9.55 -39.31 -0.38 -2.32 16 11 C 0.48 9.05 6.58 31.89 0.21 9.26 16 12 O -0.51 -10.31 13.17 -19.42 -0.26 -10.56 16 13 O -0.32 -7.15 8.27 -41.34 -0.34 -7.49 16 14 C 0.22 5.45 1.96 -27.89 -0.05 5.40 16 15 H 0.05 1.34 6.17 -51.93 -0.32 1.02 16 16 C -0.52 -14.71 9.47 -34.44 -0.33 -15.04 16 17 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 18 C 0.08 2.31 5.44 -17.82 -0.10 2.21 16 19 N -0.89 -26.43 13.96 55.43 0.77 -25.65 16 20 Si 0.87 21.34 24.48 -169.99 -4.16 17.17 16 21 H -0.27 -6.45 6.72 56.52 0.38 -6.07 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.26 -6.15 6.53 56.52 0.37 -5.78 16 24 C -0.16 -3.74 4.45 -90.62 -0.40 -4.14 16 25 C -0.17 -3.31 9.79 -26.69 -0.26 -3.57 16 26 C -0.21 -4.02 9.84 -26.69 -0.26 -4.28 16 27 O -0.11 -1.24 10.18 4.70 0.05 -1.19 16 28 H 0.14 0.30 8.14 -51.92 -0.42 -0.12 16 29 H 0.14 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.13 0.10 8.14 -51.92 -0.42 -0.32 16 31 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.17 0.96 8.06 -52.48 -0.42 0.54 16 33 H 0.17 1.76 7.46 -52.49 -0.39 1.37 16 34 H 0.15 1.93 7.72 -52.48 -0.41 1.53 16 35 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.11 2.56 4.39 -51.93 -0.23 2.33 16 37 H 0.09 1.76 6.93 -51.93 -0.36 1.40 16 38 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 40 H 0.10 1.98 5.33 -51.93 -0.28 1.70 16 LS Contribution 355.65 15.07 5.36 5.36 Total: -1.00 -37.43 355.65 -7.58 -45.02 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -4.55 Total: 2.66 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -1.75 Total: -21.38 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.77 Total: -25.65 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -2.62 Total: -40.06 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.16 Total: 17.17 kcal Atomic # 16 Polarization: 17.53 SS G_CDS: -0.64 Total: 16.89 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.43 -7.58 -45.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345534428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.400 kcal (2) G-P(sol) polarization free energy of solvation -37.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds