Wall clock time and date at job start Sat Apr 11 2020 05:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42099 * 110.54590 * 2 1 4 4 O 1.42104 * 110.54346 * 223.24661 * 2 1 3 5 5 C 1.76205 * 104.44949 * 111.62378 * 2 1 3 6 6 C 1.35179 * 125.47661 * 90.01857 * 5 2 1 7 7 C 1.40285 * 107.20635 * 179.73947 * 6 5 2 8 8 C 1.37995 * 106.52569 * 0.35304 * 7 6 5 9 9 C 1.41535 * 126.10697 * 179.90683 * 8 7 6 10 10 C 1.35757 * 119.99830 * 179.43766 * 9 8 7 11 11 C 1.41285 * 119.99562 * 179.97438 * 10 9 8 12 12 O 1.21703 * 120.00405 * 0.02562 * 11 10 9 13 13 O 1.35006 * 119.99902 * 180.02562 * 11 10 9 14 14 C 1.42899 * 117.00256 * 180.02562 * 13 11 10 15 15 H 1.09003 * 109.46629 * 330.00170 * 14 13 11 16 16 C 1.50691 * 109.47021 * 209.99973 * 14 13 11 17 17 H 1.07998 * 120.00466 * 359.97438 * 16 14 13 18 18 C 1.37878 * 119.99866 * 180.02562 * 16 14 13 19 19 N 1.31512 * 120.00110 * 180.02562 * 18 16 14 20 20 Si 1.86804 * 120.00047 * 359.97438 * 18 16 14 21 21 H 1.48496 * 109.46923 * 90.00351 * 20 18 16 22 22 H 1.48495 * 109.47302 * 210.00517 * 20 18 16 23 23 H 1.48497 * 109.47176 * 330.00386 * 20 18 16 24 24 C 1.53000 * 109.46930 * 89.99579 * 14 13 11 25 25 C 1.52999 * 117.50029 * 8.75370 * 24 14 13 26 26 C 1.53002 * 117.50362 * 300.08906 * 24 14 13 27 27 O 1.34001 * 125.47692 * 269.97177 * 5 2 1 28 28 H 1.09001 * 109.47116 * 308.37552 * 1 2 3 29 29 H 1.08998 * 109.47338 * 68.37301 * 1 2 3 30 30 H 1.09003 * 109.47338 * 188.37970 * 1 2 3 31 31 H 1.07998 * 126.39501 * 359.96251 * 6 5 2 32 32 H 1.08006 * 126.73521 * 180.22248 * 7 6 5 33 33 H 1.07991 * 119.99786 * 359.71536 * 9 8 7 34 34 H 1.08004 * 120.00001 * 0.02562 * 10 9 8 35 35 H 0.97000 * 120.00232 * 179.97438 * 19 18 16 36 36 H 1.09006 * 115.54912 * 154.41390 * 24 14 13 37 37 H 1.09003 * 117.50069 * 359.97438 * 25 24 14 38 38 H 1.09003 * 117.50103 * 145.02436 * 25 24 14 39 39 H 1.08997 * 117.49901 * 214.97867 * 26 24 14 40 40 H 1.08998 * 117.49435 * 359.97370 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9117 5 6 2.2536 -0.6288 1.5862 6 6 2.4497 -1.9321 1.8867 7 6 2.7879 -1.9981 3.2466 8 6 2.7725 -0.7013 3.7183 9 6 3.0527 -0.2927 5.0441 10 6 3.0122 1.0243 5.3713 11 6 3.2913 1.4321 6.6949 12 8 3.5686 0.6029 7.5415 13 8 3.2506 2.7417 7.0205 14 6 3.5442 3.0824 8.3769 15 1 3.2445 2.2631 9.0303 16 6 2.7887 4.3298 8.7562 17 1 2.1487 4.8143 8.0338 18 6 2.9154 4.8533 10.0254 19 7 2.2557 5.9417 10.3567 20 14 4.0231 4.0159 11.2750 21 1 5.3943 4.5771 11.1755 22 1 3.4912 4.2477 12.6419 23 1 4.0642 2.5570 11.0008 24 6 5.0465 3.3306 8.5265 25 6 5.8849 3.3825 7.2477 26 6 5.9909 2.1764 8.1843 27 8 2.4482 0.1082 2.6883 28 1 -0.3633 0.6380 0.8057 29 1 -0.3634 0.3787 -0.9553 30 1 -0.3634 -1.0167 0.1498 31 1 2.3657 -2.7663 1.2061 32 1 3.0137 -2.8892 3.8136 33 1 3.3030 -1.0280 5.7942 34 1 2.7657 1.7600 4.6201 35 1 2.3445 6.3098 11.2498 36 1 5.3348 3.9911 9.3444 37 1 5.3662 3.2395 6.2997 38 1 6.7249 4.0768 7.2244 39 1 6.9004 2.0778 8.7768 40 1 5.5418 1.2401 7.8530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345534428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:51 Heat of formation + Delta-G solvation = -105.028160 kcal Electronic energy + Delta-G solvation = -26568.329092 eV Core-core repulsion = 22443.773307 eV Total energy + Delta-G solvation = -4124.555785 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.090 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.81474 -41.86503 -38.78130 -38.29540 -37.15339 -36.78803 -35.53953 -34.91949 -34.38700 -31.25980 -30.50519 -30.13144 -26.55338 -24.77412 -23.51920 -23.31736 -22.81513 -21.56999 -20.64796 -20.44621 -19.22605 -19.10553 -18.66893 -17.94297 -17.83237 -17.55322 -16.84878 -16.82326 -16.62558 -16.51337 -15.61085 -15.08060 -14.95551 -14.79512 -14.26041 -14.17978 -14.02189 -13.97056 -13.88362 -13.61242 -13.41858 -13.37362 -13.29416 -13.19560 -12.72426 -12.62375 -12.47738 -12.14745 -12.10386 -11.98229 -11.90977 -11.68925 -11.46874 -11.24832 -11.06641 -10.78617 -10.66317 -9.54666 -8.45044 -6.53616 -1.18989 -1.00738 0.43913 1.22812 1.29222 1.30345 1.41664 1.42753 1.91027 2.00916 2.02837 2.20510 2.82096 2.83502 2.96704 3.21583 3.51225 3.66849 3.85949 3.92102 3.94315 3.99928 4.09075 4.09648 4.16905 4.28933 4.36353 4.47310 4.57292 4.68885 4.71265 4.79674 4.95208 4.96464 4.98279 5.09290 5.18854 5.20957 5.35373 5.57359 5.61954 6.11181 6.49797 6.81154 7.11409 8.70803 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.021037 B = 0.002374 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.655118 B =11791.506263 C =12243.511510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.615 4.615 2 S 2.533 3.467 3 O -0.971 6.971 4 O -0.944 6.944 5 C -0.562 4.562 6 C -0.096 4.096 7 C -0.162 4.162 8 C 0.014 3.986 9 C 0.031 3.969 10 C -0.187 4.187 11 C 0.487 3.513 12 O -0.533 6.533 13 O -0.343 6.343 14 C 0.230 3.770 15 H 0.035 0.965 16 C -0.535 4.535 17 H 0.045 0.955 18 C 0.031 3.969 19 N -0.931 5.931 20 Si 0.939 3.061 21 H -0.255 1.255 22 H -0.282 1.282 23 H -0.251 1.251 24 C -0.200 4.200 25 C -0.158 4.158 26 C -0.184 4.184 27 O -0.132 6.132 28 H 0.148 0.852 29 H 0.165 0.835 30 H 0.165 0.835 31 H 0.204 0.796 32 H 0.201 0.799 33 H 0.185 0.815 34 H 0.148 0.852 35 H 0.275 0.725 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.958 -20.210 -20.719 29.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.770 4.770 2 S 2.709 3.291 3 O -0.968 6.968 4 O -0.942 6.942 5 C -0.691 4.691 6 C -0.115 4.115 7 C -0.181 4.181 8 C -0.038 4.038 9 C 0.012 3.988 10 C -0.206 4.206 11 C 0.337 3.663 12 O -0.427 6.427 13 O -0.259 6.259 14 C 0.175 3.825 15 H 0.052 0.948 16 C -0.572 4.572 17 H 0.063 0.937 18 C -0.168 4.168 19 N -0.569 5.569 20 Si 0.763 3.237 21 H -0.180 1.180 22 H -0.209 1.209 23 H -0.175 1.175 24 C -0.218 4.218 25 C -0.195 4.195 26 C -0.221 4.221 27 O -0.027 6.027 28 H 0.167 0.833 29 H 0.183 0.817 30 H 0.183 0.817 31 H 0.221 0.779 32 H 0.218 0.782 33 H 0.202 0.798 34 H 0.166 0.834 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.316 -19.704 -20.869 28.731 hybrid contribution -0.077 0.087 1.712 1.716 sum -1.394 -19.617 -19.156 27.454 Atomic orbital electron populations 1.30016 1.17374 1.15021 1.14581 1.04916 0.80612 0.72805 0.70766 1.93577 1.80091 1.37989 1.85172 1.93604 1.80282 1.62574 1.57720 1.36057 1.21933 1.01302 1.09771 1.22347 0.96189 0.96126 0.96882 1.23033 1.02674 0.96945 0.95421 1.20553 1.04459 0.90399 0.88434 1.20969 0.90448 0.96162 0.91173 1.21521 1.06661 0.98393 0.93976 1.20256 0.74284 0.81398 0.90392 1.90792 1.46300 1.53292 1.52353 1.86247 1.79784 1.26197 1.33629 1.19658 0.90886 0.95074 0.76931 0.94792 1.20911 1.27770 1.09831 0.98721 0.93710 1.25554 0.96813 0.94988 0.99469 1.69966 1.43143 1.22155 1.21641 0.85991 0.79410 0.80578 0.77730 1.17976 1.20886 1.17477 1.23216 0.93781 1.03363 1.01466 1.22890 1.01666 1.01026 0.93933 1.23306 1.01419 0.93445 1.03901 1.84248 1.66309 1.36177 1.15943 0.83328 0.81722 0.81672 0.77889 0.78210 0.79845 0.83444 0.91571 0.88403 0.89110 0.87154 0.87152 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -0.89 10.80 113.37 1.22 0.34 16 2 S 2.53 31.65 5.94 -56.49 -0.34 31.31 16 3 O -0.97 -22.42 17.95 -126.71 -2.27 -24.69 16 4 O -0.94 -15.74 17.69 -127.65 -2.26 -18.00 16 5 C -0.56 -9.11 6.96 67.11 0.47 -8.64 16 6 C -0.10 -1.17 10.49 22.06 0.23 -0.94 16 7 C -0.16 -2.16 10.90 22.71 0.25 -1.92 16 8 C 0.01 0.28 6.84 23.03 0.16 0.44 16 9 C 0.03 0.68 9.39 22.51 0.21 0.90 16 10 C -0.19 -5.50 9.55 22.44 0.21 -5.29 16 11 C 0.49 18.88 6.58 68.57 0.45 19.33 16 12 O -0.53 -21.76 13.17 19.17 0.25 -21.50 16 13 O -0.34 -15.98 8.27 -59.25 -0.49 -16.47 16 14 C 0.23 11.74 1.96 29.85 0.06 11.80 16 15 H 0.03 1.84 6.17 -2.39 -0.01 1.82 16 16 C -0.53 -31.98 9.47 25.60 0.24 -31.74 16 17 H 0.04 2.96 8.06 -2.91 -0.02 2.94 16 18 C 0.03 1.85 5.44 84.66 0.46 2.31 16 19 N -0.93 -57.70 13.96 21.45 0.30 -57.40 16 20 Si 0.94 44.78 24.48 68.60 1.68 46.46 16 21 H -0.25 -11.30 6.72 99.48 0.67 -10.63 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.25 -11.68 6.53 99.48 0.65 -11.03 16 24 C -0.20 -9.01 4.45 -10.79 -0.05 -9.06 16 25 C -0.16 -5.96 9.79 30.62 0.30 -5.66 16 26 C -0.18 -6.81 9.84 30.62 0.30 -6.51 16 27 O -0.13 -2.94 10.18 -6.10 -0.06 -3.01 16 28 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.16 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H 0.17 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H 0.20 1.06 8.06 -2.91 -0.02 1.04 16 32 H 0.20 1.29 8.06 -2.91 -0.02 1.27 16 33 H 0.18 3.47 7.46 -2.92 -0.02 3.45 16 34 H 0.15 4.20 7.72 -2.91 -0.02 4.17 16 35 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 36 H 0.10 4.57 4.39 -2.38 -0.01 4.56 16 37 H 0.09 3.44 6.93 -2.39 -0.02 3.43 16 38 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 39 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.10 3.69 5.33 -2.39 -0.01 3.67 16 Total: -1.00 -86.90 355.65 2.32 -84.58 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.99 Total: 13.35 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 4.52 Total: -34.64 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.30 Total: -57.40 kcal Atomic # 8 Polarization: -78.83 SS G_CDS: -4.83 Total: -83.67 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.68 Total: 46.46 kcal Atomic # 16 Polarization: 31.65 SS G_CDS: -0.34 Total: 31.31 kcal Total: -86.90 2.32 -84.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345534428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.448 kcal (2) G-P(sol) polarization free energy of solvation -86.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds