Wall clock time and date at job start Sat Apr 11 2020 05:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42100 * 110.54363 * 2 1 4 4 O 1.42103 * 110.54420 * 223.25030 * 2 1 3 5 5 C 1.76202 * 104.45085 * 111.62734 * 2 1 3 6 6 C 1.35178 * 125.48280 * 90.01650 * 5 2 1 7 7 C 1.40277 * 107.20957 * 179.70649 * 6 5 2 8 8 C 1.37999 * 106.52760 * 0.41368 * 7 6 5 9 9 C 1.41533 * 126.10721 * 179.85391 * 8 7 6 10 10 C 1.35758 * 119.99959 * 220.03842 * 9 8 7 11 11 C 1.41283 * 119.99668 * 8.64625 * 10 9 8 12 12 O 1.21717 * 120.00512 * 6.42111 * 11 10 9 13 13 O 1.35000 * 120.00245 * 186.41832 * 11 10 9 14 14 C 1.42895 * 117.00410 * 180.02562 * 13 11 10 15 15 H 1.09003 * 109.47081 * 329.99827 * 14 13 11 16 16 C 1.50704 * 109.46971 * 209.99801 * 14 13 11 17 17 H 1.07998 * 120.00065 * 359.97438 * 16 14 13 18 18 C 1.37882 * 119.99843 * 179.97438 * 16 14 13 19 19 N 1.31515 * 119.99974 * 179.97438 * 18 16 14 20 20 Si 1.86801 * 119.99884 * 0.02562 * 18 16 14 21 21 H 1.48499 * 109.47066 * 90.00335 * 20 18 16 22 22 H 1.48503 * 109.46869 * 209.99785 * 20 18 16 23 23 H 1.48496 * 109.47383 * 329.99808 * 20 18 16 24 24 C 1.52998 * 109.47260 * 89.99621 * 14 13 11 25 25 C 1.53000 * 117.50176 * 8.74856 * 24 14 13 26 26 C 1.52995 * 117.50266 * 300.08505 * 24 14 13 27 27 O 1.34004 * 125.47703 * 269.97319 * 5 2 1 28 28 H 1.08998 * 109.47083 * 308.37477 * 1 2 3 29 29 H 1.09002 * 109.47108 * 68.37894 * 1 2 3 30 30 H 1.09004 * 109.47205 * 188.37448 * 1 2 3 31 31 H 1.08000 * 126.39271 * 359.96995 * 6 5 2 32 32 H 1.08005 * 126.73589 * 180.26120 * 7 6 5 33 33 H 1.07998 * 120.00110 * 40.03451 * 9 8 7 34 34 H 1.07994 * 119.99895 * 188.93074 * 10 9 8 35 35 H 0.96992 * 120.00033 * 179.97438 * 19 18 16 36 36 H 1.09003 * 115.54638 * 154.41335 * 24 14 13 37 37 H 1.09008 * 117.49662 * 359.97438 * 25 24 14 38 38 H 1.08994 * 117.49930 * 145.01712 * 25 24 14 39 39 H 1.08996 * 117.50673 * 214.98035 * 26 24 14 40 40 H 1.09007 * 117.49464 * 359.97438 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2536 -0.6289 1.5861 6 6 2.4498 -1.9321 1.8867 7 6 2.7887 -1.9981 3.2463 8 6 2.7724 -0.7014 3.7183 9 6 3.0519 -0.2929 5.0442 10 6 2.3115 0.6868 5.6230 11 6 1.1520 1.1709 4.9770 12 8 0.7511 0.6324 3.9618 13 8 0.4886 2.2309 5.4858 14 6 -0.6759 2.6666 4.7813 15 1 -0.5612 2.4481 3.7196 16 6 -0.8527 4.1509 4.9726 17 1 -0.1467 4.7060 5.5725 18 6 -1.9158 4.8004 4.3817 19 7 -2.0704 6.0956 4.5491 20 14 -3.1373 3.8402 3.3448 21 1 -4.2399 3.3468 4.2086 22 1 -3.6934 4.7245 2.2893 23 1 -2.4499 2.6860 2.7120 24 6 -1.9041 1.9326 5.3232 25 6 -1.7208 1.0823 6.5818 26 6 -1.9164 0.4061 5.2226 27 8 2.4482 0.1080 2.6883 28 1 -0.3633 0.6380 0.8056 29 1 -0.3633 0.3787 -0.9554 30 1 -0.3634 -1.0167 0.1497 31 1 2.3658 -2.7664 1.2060 32 1 3.0153 -2.8891 3.8132 33 1 3.8542 -0.7605 5.5956 34 1 2.6113 1.0993 6.5750 35 1 -2.8180 6.5525 4.1331 36 1 -2.8543 2.4527 5.2011 37 1 -0.7250 1.0454 7.0237 38 1 -2.5505 1.0426 7.2876 39 1 -2.8745 -0.0784 5.0347 40 1 -1.0495 -0.0754 4.7699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345534430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:58 Heat of formation + Delta-G solvation = -94.882191 kcal Electronic energy + Delta-G solvation = -28498.005361 eV Core-core repulsion = 24373.889538 eV Total energy + Delta-G solvation = -4124.115823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.090 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.61797 -41.73678 -38.74544 -38.34021 -37.21760 -36.74346 -35.30147 -34.90782 -34.11435 -31.12428 -30.54763 -30.03682 -26.39506 -24.71605 -23.42744 -23.16073 -22.94959 -21.67301 -20.58331 -20.38335 -19.41946 -18.84269 -18.66885 -17.92717 -17.76766 -17.47441 -16.92381 -16.81130 -16.55504 -15.61902 -15.51529 -15.08913 -14.92298 -14.79459 -14.57994 -14.14474 -14.09768 -14.02260 -13.90314 -13.52326 -13.42770 -13.35943 -13.29853 -13.22691 -12.71863 -12.63687 -12.44602 -12.13431 -12.10588 -11.93636 -11.60486 -11.45289 -11.26201 -11.08486 -10.99531 -10.75126 -10.64102 -9.47216 -8.44509 -6.52514 -1.16586 -0.73872 0.48568 1.20466 1.27862 1.38526 1.39719 1.51856 2.00089 2.11330 2.19841 2.27484 2.73740 2.83670 2.98395 3.20750 3.59371 3.83673 3.87378 3.94574 3.96609 4.01038 4.09600 4.11605 4.33252 4.43391 4.46995 4.59915 4.63464 4.71250 4.79341 4.81838 4.84661 5.00386 5.06354 5.11182 5.22893 5.36799 5.39660 5.65658 5.84536 6.14936 6.50963 6.89649 7.12824 8.71534 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.011761 B = 0.004866 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.234558 B = 5752.440980 C = 7030.872253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.626 4.626 2 S 2.534 3.466 3 O -0.976 6.976 4 O -0.940 6.940 5 C -0.579 4.579 6 C -0.097 4.097 7 C -0.187 4.187 8 C 0.029 3.971 9 C 0.018 3.982 10 C -0.181 4.181 11 C 0.465 3.535 12 O -0.520 6.520 13 O -0.343 6.343 14 C 0.232 3.768 15 H 0.030 0.970 16 C -0.534 4.534 17 H 0.043 0.957 18 C 0.029 3.971 19 N -0.932 5.932 20 Si 0.935 3.065 21 H -0.254 1.254 22 H -0.283 1.283 23 H -0.247 1.247 24 C -0.201 4.201 25 C -0.154 4.154 26 C -0.183 4.183 27 O -0.116 6.116 28 H 0.127 0.873 29 H 0.165 0.835 30 H 0.166 0.834 31 H 0.194 0.806 32 H 0.201 0.799 33 H 0.227 0.773 34 H 0.183 0.817 35 H 0.274 0.726 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.536 -22.210 -2.254 23.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.780 4.780 2 S 2.712 3.288 3 O -0.974 6.974 4 O -0.937 6.937 5 C -0.710 4.710 6 C -0.117 4.117 7 C -0.206 4.206 8 C -0.025 4.025 9 C 0.001 3.999 10 C -0.200 4.200 11 C 0.314 3.686 12 O -0.413 6.413 13 O -0.259 6.259 14 C 0.177 3.823 15 H 0.047 0.953 16 C -0.571 4.571 17 H 0.061 0.939 18 C -0.170 4.170 19 N -0.570 5.570 20 Si 0.759 3.241 21 H -0.179 1.179 22 H -0.210 1.210 23 H -0.171 1.171 24 C -0.219 4.219 25 C -0.191 4.191 26 C -0.220 4.220 27 O -0.010 6.010 28 H 0.145 0.855 29 H 0.183 0.817 30 H 0.184 0.816 31 H 0.211 0.789 32 H 0.218 0.782 33 H 0.243 0.757 34 H 0.201 0.799 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.866 -21.588 -3.169 22.874 hybrid contribution -1.220 0.322 0.224 1.281 sum 5.647 -21.266 -2.945 22.199 Atomic orbital electron populations 1.30054 1.19697 1.14538 1.13693 1.04520 0.79798 0.72983 0.71523 1.93555 1.79665 1.38402 1.85757 1.93581 1.79652 1.62270 1.58210 1.35440 1.23573 1.01680 1.10341 1.22179 0.96783 0.95261 0.97512 1.22810 1.06179 0.96986 0.94646 1.21068 1.00430 0.90756 0.90275 1.21549 0.97605 0.92613 0.88150 1.22010 0.93895 0.99346 1.04715 1.20865 0.85905 0.78754 0.83063 1.90787 1.68410 1.57385 1.24765 1.86231 1.40480 1.44915 1.54297 1.19562 0.78973 0.92317 0.91478 0.95258 1.20943 1.12067 0.91042 1.33097 0.93883 1.25575 0.99023 0.95687 0.96728 1.69972 1.31914 1.09992 1.45143 0.86047 0.79778 0.79276 0.78996 1.17939 1.20975 1.17059 1.23184 0.99824 0.93158 1.05772 1.22882 1.03479 1.02111 0.90591 1.23281 1.03965 0.93884 1.00870 1.84404 1.64547 1.36200 1.15810 0.85451 0.81699 0.81629 0.78864 0.78193 0.75705 0.79930 0.91683 0.88731 0.88638 0.87328 0.87477 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -11.23 10.79 113.37 1.22 -10.00 16 2 S 2.53 64.82 5.94 -56.49 -0.34 64.48 16 3 O -0.98 -35.31 17.95 -126.71 -2.27 -37.58 16 4 O -0.94 -24.80 17.70 -127.65 -2.26 -27.06 16 5 C -0.58 -16.13 6.96 67.11 0.47 -15.67 16 6 C -0.10 -2.06 10.49 22.06 0.23 -1.82 16 7 C -0.19 -3.55 10.90 22.71 0.25 -3.31 16 8 C 0.03 0.72 5.32 23.03 0.12 0.84 16 9 C 0.02 0.34 9.95 22.51 0.22 0.56 16 10 C -0.18 -4.44 9.99 22.44 0.22 -4.22 16 11 C 0.47 17.19 6.39 68.57 0.44 17.63 16 12 O -0.52 -20.45 9.47 27.04 0.26 -20.19 16 13 O -0.34 -15.36 8.27 -59.19 -0.49 -15.85 16 14 C 0.23 11.61 1.96 29.85 0.06 11.67 16 15 H 0.03 1.57 6.17 -2.39 -0.01 1.56 16 16 C -0.53 -31.76 9.47 25.60 0.24 -31.52 16 17 H 0.04 2.84 8.06 -2.91 -0.02 2.82 16 18 C 0.03 1.72 5.44 84.66 0.46 2.18 16 19 N -0.93 -57.89 13.96 21.45 0.30 -57.59 16 20 Si 0.94 44.17 24.48 68.60 1.68 45.85 16 21 H -0.25 -11.11 6.72 99.48 0.67 -10.44 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 23 H -0.25 -11.13 6.53 99.48 0.65 -10.48 16 24 C -0.20 -8.71 4.45 -10.80 -0.05 -8.76 16 25 C -0.15 -5.37 9.79 30.62 0.30 -5.07 16 26 C -0.18 -6.37 9.84 30.62 0.30 -6.06 16 27 O -0.12 -3.90 7.82 18.42 0.14 -3.76 16 28 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 29 H 0.17 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.17 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.19 2.73 8.06 -2.91 -0.02 2.70 16 32 H 0.20 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.23 1.32 8.06 -2.91 -0.02 1.29 16 34 H 0.18 3.28 8.06 -2.91 -0.02 3.25 16 35 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 36 H 0.09 4.30 4.40 -2.39 -0.01 4.29 16 37 H 0.10 3.27 6.93 -2.38 -0.02 3.25 16 38 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.11 3.16 8.14 -2.39 -0.02 3.15 16 40 H 0.10 3.49 5.33 -2.38 -0.01 3.47 16 Total: -1.00 -88.29 349.82 2.50 -85.79 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.99 Total: 19.45 kcal Atomic # 6 Polarization: -58.04 SS G_CDS: 4.49 Total: -53.55 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: 0.30 Total: -57.59 kcal Atomic # 8 Polarization: -99.82 SS G_CDS: -4.62 Total: -104.44 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.68 Total: 45.85 kcal Atomic # 16 Polarization: 64.82 SS G_CDS: -0.34 Total: 64.48 kcal Total: -88.29 2.50 -85.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345534430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.091 kcal (2) G-P(sol) polarization free energy of solvation -88.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds