Wall clock time and date at job start Sat Apr 11 2020 05:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34750 * 117.00190 * 2 1 4 4 O 1.21504 * 119.99567 * 0.02562 * 3 2 1 5 5 C 1.47463 * 119.99824 * 179.97438 * 3 2 1 6 6 C 1.39812 * 120.09616 * 0.02562 * 5 3 2 7 7 C 1.37660 * 119.90557 * 180.02562 * 6 5 3 8 8 C 1.39031 * 120.09371 * 0.02562 * 7 6 5 9 9 O 1.35699 * 119.90474 * 179.97438 * 8 7 6 10 10 C 1.42895 * 117.00273 * 0.02666 * 9 8 7 11 11 C 1.38988 * 120.18827 * 0.02562 * 8 7 6 12 12 C 1.50703 * 119.95757 * 179.97438 * 11 8 7 13 13 O 1.45196 * 109.47396 * 179.97438 * 12 11 8 14 14 C 1.34234 * 116.99938 * 180.02562 * 13 12 11 15 15 O 1.20826 * 119.99712 * 359.72483 * 14 13 12 16 16 C 1.50700 * 120.00068 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.46929 * 179.97438 * 16 14 13 18 18 C 1.76200 * 99.99783 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00084 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00055 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00233 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99944 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47253 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46747 * 120.00454 * 22 20 18 25 25 H 1.48502 * 109.47409 * 240.00145 * 22 20 18 26 26 C 1.37702 * 120.09531 * 0.25062 * 11 8 7 27 27 H 1.08997 * 109.46908 * 59.99331 * 1 2 3 28 28 H 1.08999 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46943 * 299.99463 * 1 2 3 30 30 H 1.08001 * 120.04512 * 359.97438 * 6 5 3 31 31 H 1.07997 * 119.95280 * 180.02562 * 7 6 5 32 32 H 1.09007 * 109.47033 * 59.99765 * 10 9 8 33 33 H 1.08997 * 109.47291 * 179.97438 * 10 9 8 34 34 H 1.09000 * 109.47174 * 299.99993 * 10 9 8 35 35 H 1.09012 * 109.46606 * 59.99913 * 12 11 8 36 36 H 1.08996 * 109.47079 * 300.00491 * 12 11 8 37 37 H 1.08992 * 109.47012 * 300.00044 * 16 14 13 38 38 H 1.08999 * 109.46550 * 59.99877 * 16 14 13 39 39 H 0.96995 * 120.00322 * 180.02562 * 21 20 18 40 40 H 1.08000 * 120.05012 * 179.72993 * 26 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2196 0.0005 5 6 3.5364 1.2777 0.0006 6 6 4.2998 0.1064 0.0006 7 6 5.6743 0.1829 0.0016 8 6 6.3034 1.4227 0.0033 9 8 7.6586 1.4937 0.0048 10 6 8.3730 0.2562 0.0041 11 6 5.5484 2.5896 0.0043 12 6 6.2358 3.9307 0.0067 13 8 5.2384 4.9859 0.0068 14 6 5.6889 6.2503 0.0083 15 8 6.8774 6.4682 0.0144 16 6 4.7124 7.3982 0.0091 17 16 5.6214 8.9634 0.0118 18 6 4.2744 10.0993 0.0115 19 1 3.2586 9.7325 0.0105 20 6 4.5188 11.4656 0.0138 21 7 5.7568 11.9128 0.0156 22 14 3.0907 12.6699 0.0129 23 1 1.8098 11.9187 0.0102 24 1 3.1615 13.5226 1.2267 25 1 3.1657 13.5258 -1.1984 26 6 4.1730 2.5221 0.0090 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 3.8118 -0.8571 0.0006 31 1 6.2647 -0.7214 0.0012 32 1 8.1106 -0.3144 -0.8869 33 1 9.4447 0.4553 0.0051 34 1 8.1088 -0.3165 0.8931 35 1 6.8594 4.0208 -0.8829 36 1 6.8582 4.0184 0.8971 37 1 4.0860 7.3429 -0.8811 38 1 4.0854 7.3410 0.8988 39 1 5.9276 12.8676 0.0176 40 1 3.5870 3.4293 0.0143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349936643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:06 Heat of formation + Delta-G solvation = -178.979050 kcal Electronic energy + Delta-G solvation = -25796.148799 eV Core-core repulsion = 21668.386263 eV Total energy + Delta-G solvation = -4127.762536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.090 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.09644 -40.31777 -39.88000 -37.84045 -36.58949 -36.16570 -32.76360 -32.45699 -31.02202 -29.75672 -28.41117 -27.67569 -26.48097 -25.50040 -23.97482 -22.44770 -20.99490 -20.73225 -18.61046 -18.03614 -17.90044 -17.30364 -17.05880 -16.66259 -16.48795 -16.23176 -16.07156 -15.71283 -14.86105 -14.81878 -14.33333 -14.20181 -14.06325 -13.97634 -13.63373 -13.59255 -13.05497 -12.82611 -12.65867 -12.47414 -12.34741 -12.04301 -11.91217 -11.54520 -11.30839 -11.08437 -11.07092 -11.04585 -10.78976 -10.76961 -10.67728 -10.01155 -9.86516 -9.32082 -9.09599 -8.66600 -8.32647 -6.57277 -6.24765 -3.97011 0.38731 0.88867 2.23032 2.39134 2.59791 2.68084 2.75006 3.22216 3.26167 3.31950 3.35221 3.52509 4.16912 4.20837 4.34911 4.47346 4.56792 4.71173 4.78529 4.81015 4.83696 4.89297 5.05395 5.10415 5.11223 5.17283 5.19266 5.31774 5.38199 5.48796 5.55794 5.72378 5.82438 5.82762 5.91769 6.10160 6.13170 6.25896 6.70074 6.81555 7.50143 7.58983 8.17505 8.33805 9.21078 10.82816 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.011570 B = 0.002481 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.399703 B =11282.581003 C =13670.927158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.511 3.489 4 O -0.500 6.500 5 C -0.168 4.168 6 C -0.020 4.020 7 C -0.222 4.222 8 C 0.174 3.826 9 O -0.306 6.306 10 C 0.024 3.976 11 C -0.131 4.131 12 C 0.120 3.880 13 O -0.360 6.360 14 C 0.482 3.518 15 O -0.486 6.486 16 C -0.129 4.129 17 S -0.059 6.059 18 C -0.534 4.534 19 H 0.077 0.923 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.921 3.079 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.279 1.279 26 C 0.007 3.993 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.269 0.731 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.461 -30.838 -0.033 30.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.356 3.644 4 O -0.389 6.389 5 C -0.169 4.169 6 C -0.038 4.038 7 C -0.241 4.241 8 C 0.127 3.873 9 O -0.218 6.218 10 C -0.071 4.071 11 C -0.132 4.132 12 C 0.046 3.954 13 O -0.279 6.279 14 C 0.323 3.677 15 O -0.371 6.371 16 C -0.277 4.277 17 S 0.168 5.832 18 C -0.682 4.682 19 H 0.095 0.905 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.748 3.252 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.011 4.011 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.083 0.917 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.078 0.922 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.078 0.922 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.938 -29.995 -0.028 30.010 hybrid contribution -2.264 0.179 -0.003 2.271 sum -3.202 -29.816 -0.031 29.988 Atomic orbital electron populations 1.23281 0.75874 1.03665 1.02864 1.86517 1.23645 1.32779 1.84675 1.21040 0.88961 0.81480 0.72930 1.90891 1.66649 1.35860 1.45473 1.18957 0.89232 0.94642 1.14116 1.21233 0.92852 0.98095 0.91666 1.21137 0.95556 0.96447 1.10917 1.18999 0.82744 0.93086 0.92476 1.86106 1.15111 1.33401 1.87223 1.23192 0.97206 0.84996 1.01695 1.18886 0.92887 0.92413 1.09035 1.21372 0.88862 0.81370 1.03819 1.86443 1.40449 1.15909 1.85073 1.23293 0.89469 0.82552 0.72341 1.90676 1.17735 1.84680 1.43980 1.23308 1.01220 0.96482 1.06647 1.85401 1.10507 0.90453 1.96883 1.22891 0.93488 0.92730 1.59113 0.90492 1.25006 0.96691 0.97493 0.94374 1.70021 1.18711 1.14760 1.46807 0.86069 0.81163 0.80104 0.77903 1.19470 1.20531 1.20526 1.21046 0.92818 0.97615 0.89641 0.91718 0.88031 0.91713 0.84037 0.84167 0.92156 0.87662 0.92150 0.89491 0.89485 0.87787 0.87773 0.92153 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.57 101.05 1.07 1.32 16 2 O -0.36 -3.41 9.81 -40.63 -0.40 -3.80 16 3 C 0.51 6.08 7.89 34.49 0.27 6.36 16 4 O -0.50 -7.48 16.13 -19.27 -0.31 -7.79 16 5 C -0.17 -1.84 5.87 -104.97 -0.62 -2.46 16 6 C -0.02 -0.17 9.61 -39.20 -0.38 -0.54 16 7 C -0.22 -1.69 9.01 -39.50 -0.36 -2.04 16 8 C 0.17 1.72 6.67 -39.01 -0.26 1.46 16 9 O -0.31 -2.84 9.90 -18.80 -0.19 -3.03 16 10 C 0.02 0.12 9.81 101.05 0.99 1.11 16 11 C -0.13 -1.58 5.89 -104.54 -0.62 -2.19 16 12 C 0.12 1.66 5.32 36.01 0.19 1.85 16 13 O -0.36 -5.89 8.68 -39.27 -0.34 -6.24 16 14 C 0.48 9.43 7.98 36.01 0.29 9.72 16 15 O -0.49 -10.77 15.61 -18.75 -0.29 -11.06 16 16 C -0.13 -2.68 6.27 36.01 0.23 -2.46 16 17 S -0.06 -1.59 20.58 -107.50 -2.21 -3.80 16 18 C -0.53 -15.18 9.50 30.94 0.29 -14.89 16 19 H 0.08 2.08 7.80 -52.49 -0.41 1.67 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.01 13.22 55.49 0.73 -25.27 16 22 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 C 0.01 0.08 8.92 -39.20 -0.35 -0.26 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.14 0.84 7.60 -52.49 -0.40 0.44 16 31 H 0.14 0.64 6.28 -52.49 -0.33 0.31 16 32 H 0.06 0.21 7.65 -51.92 -0.40 -0.18 16 33 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.21 7.65 -51.93 -0.40 -0.18 16 35 H 0.09 1.20 8.14 -51.92 -0.42 0.78 16 36 H 0.09 1.20 8.13 -51.93 -0.42 0.78 16 37 H 0.10 2.02 8.14 -51.92 -0.42 1.60 16 38 H 0.10 2.02 8.14 -51.92 -0.42 1.60 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.16 2.17 6.56 -52.49 -0.34 1.82 16 LS Contribution 370.55 15.07 5.58 5.58 Total: -1.00 -35.43 370.55 -6.58 -42.01 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -4.79 Total: -2.02 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 0.66 Total: -1.03 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.73 Total: -25.27 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -1.53 Total: -31.92 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.43 -6.58 -42.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349936643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.965 kcal (2) G-P(sol) polarization free energy of solvation -35.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds