Wall clock time and date at job start Sat Apr 11 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 117.00256 * 2 1 4 4 O 1.20825 * 119.99685 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00162 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.47341 * 180.02562 * 5 3 2 7 7 C 1.33319 * 119.99666 * 269.99810 * 6 5 3 8 8 H 1.08005 * 120.00286 * 23.28612 * 7 6 5 9 9 C 1.46787 * 120.00068 * 203.27949 * 7 6 5 10 10 N 1.29321 * 119.99791 * 14.30599 * 9 7 6 11 11 Si 1.86800 * 120.00193 * 194.30512 * 9 7 6 12 12 H 1.48496 * 109.46946 * 65.00211 * 11 9 7 13 13 H 1.48504 * 109.46979 * 185.00016 * 11 9 7 14 14 H 1.48495 * 109.47325 * 305.00257 * 11 9 7 15 15 C 1.34775 * 120.00402 * 89.99588 * 6 5 3 16 16 O 1.21488 * 119.99975 * 233.60129 * 15 6 5 17 17 C 1.47564 * 119.99721 * 53.59645 * 15 6 5 18 18 C 1.39770 * 120.12689 * 25.99647 * 17 15 6 19 19 C 1.37779 * 119.87279 * 179.97438 * 18 17 15 20 20 N 1.48014 * 119.93693 * 179.97438 * 19 18 17 21 21 O 1.31704 * 119.99789 * 354.71962 * 20 19 18 22 22 O 1.31699 * 120.00352 * 174.71691 * 20 19 18 23 23 C 1.38711 * 120.12737 * 0.02562 * 19 18 17 24 24 F 1.35101 * 119.87192 * 179.97438 * 23 19 18 25 25 C 1.38667 * 120.25109 * 0.02562 * 23 19 18 26 26 C 1.37820 * 120.13090 * 359.97438 * 25 23 19 27 27 C 1.50700 * 120.06437 * 179.97438 * 26 25 23 28 28 H 1.08994 * 109.47314 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47138 * 300.00422 * 1 2 3 30 30 H 1.09005 * 109.47023 * 59.99906 * 1 2 3 31 31 H 1.09002 * 109.47221 * 59.99607 * 5 3 2 32 32 H 1.09001 * 109.47005 * 300.00114 * 5 3 2 33 33 H 0.97002 * 119.99761 * 184.97628 * 10 9 7 34 34 H 1.08001 * 120.06048 * 0.24635 * 18 17 15 35 35 H 1.08002 * 119.93192 * 179.97438 * 25 23 19 36 36 H 1.09006 * 109.46857 * 94.68075 * 27 26 25 37 37 H 1.09000 * 109.47179 * 214.67897 * 27 26 25 38 38 H 1.08997 * 109.47371 * 334.68270 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.1703 3.3196 -1.1541 8 1 3.6810 2.9704 -2.0514 9 6 5.0429 4.4988 -1.2056 10 7 5.8394 4.7572 -0.2201 11 14 5.0029 5.6262 -2.6945 12 1 3.6717 6.2776 -2.7864 13 1 6.0543 6.6658 -2.5565 14 1 5.2511 4.8313 -3.9240 15 6 4.1733 3.3252 1.1676 16 8 3.6008 4.3750 1.3823 17 6 5.0784 2.7568 2.1851 18 6 6.1213 1.9092 1.8013 19 6 6.9636 1.3818 2.7556 20 7 8.0682 0.4835 2.3508 21 8 8.1828 0.1058 1.0943 22 8 8.9363 0.0621 3.2469 23 6 6.7778 1.6902 4.0952 24 9 7.6065 1.1698 5.0267 25 6 5.7441 2.5298 4.4819 26 6 4.8954 3.0631 3.5361 27 6 3.7722 3.9749 3.9581 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 3.9557 0.7808 -0.8908 32 1 3.9564 0.7805 0.8891 33 1 6.3629 5.5738 -0.2209 34 1 6.2693 1.6715 0.7582 35 1 5.6040 2.7661 5.5264 36 1 4.0976 5.0123 3.8801 37 1 2.9109 3.8146 3.3096 38 1 3.4957 3.7574 4.9897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001360964444.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:12 Heat of formation + Delta-G solvation = -96.535785 kcal Electronic energy + Delta-G solvation = -30571.374241 eV Core-core repulsion = 25913.266288 eV Total energy + Delta-G solvation = -4658.107953 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.099 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.46860 -41.89642 -41.23788 -40.20742 -39.09470 -37.48453 -36.47983 -35.63201 -34.25547 -34.17950 -32.27231 -30.21807 -29.81274 -27.84036 -26.93633 -26.13176 -24.78646 -23.21751 -22.45833 -21.55746 -20.12093 -19.42489 -18.95845 -18.67374 -18.38584 -17.78081 -17.64802 -17.53228 -17.42470 -17.05858 -16.63027 -16.55241 -15.95003 -15.67529 -15.47319 -15.02141 -14.75857 -14.48729 -14.47372 -14.10726 -13.72632 -13.56745 -13.22429 -13.16878 -12.98881 -12.94994 -12.87783 -12.82864 -12.58181 -12.55922 -12.28682 -12.12831 -11.95918 -11.75336 -11.73983 -11.10075 -10.59001 -10.53861 -10.20112 -9.77939 -8.49270 -5.64448 -1.95003 -0.61474 -0.18335 -0.12707 1.23682 1.32757 1.41798 1.45867 1.50604 1.76895 2.22984 2.37045 2.41046 2.81226 3.01988 3.08624 3.32583 3.51270 3.69681 3.85652 4.02232 4.14821 4.22956 4.33393 4.34304 4.34839 4.45865 4.47147 4.56156 4.62257 4.70442 4.73206 4.98668 5.14421 5.27795 5.36378 5.38139 5.46730 5.80042 6.64777 6.81367 7.20226 7.37418 7.94293 8.58808 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.008846 B = 0.005166 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3164.544627 B = 5418.889030 C = 6459.892794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.436 3.564 4 O -0.526 6.526 5 C 0.119 3.881 6 N -0.483 5.483 7 C -0.354 4.354 8 H 0.085 0.915 9 C 0.006 3.994 10 N -0.855 5.855 11 Si 0.976 3.024 12 H -0.286 1.286 13 H -0.281 1.281 14 H -0.256 1.256 15 C 0.567 3.433 16 O -0.546 6.546 17 C -0.125 4.125 18 C 0.022 3.978 19 C -0.068 4.068 20 N -0.007 5.007 21 O -0.197 6.197 22 O -0.177 6.177 23 C 0.183 3.817 24 F -0.100 7.100 25 C -0.139 4.139 26 C 0.042 3.958 27 C -0.114 4.114 28 H 0.138 0.862 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.136 0.864 32 H 0.118 0.882 33 H 0.278 0.722 34 H 0.156 0.844 35 H 0.211 0.789 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.234 -7.520 8.759 12.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.277 3.723 4 O -0.414 6.414 5 C -0.007 4.007 6 N -0.205 5.205 7 C -0.482 4.482 8 H 0.103 0.897 9 C -0.204 4.204 10 N -0.489 5.489 11 Si 0.801 3.199 12 H -0.212 1.212 13 H -0.206 1.206 14 H -0.180 1.180 15 C 0.361 3.639 16 O -0.425 6.425 17 C -0.130 4.130 18 C 0.002 3.998 19 C -0.156 4.156 20 N 0.467 4.533 21 O -0.384 6.384 22 O -0.371 6.371 23 C 0.162 3.838 24 F -0.078 7.078 25 C -0.157 4.157 26 C 0.040 3.960 27 C -0.169 4.169 28 H 0.156 0.844 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.154 0.846 32 H 0.135 0.865 33 H 0.090 0.910 34 H 0.173 0.827 35 H 0.228 0.772 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.003 -6.220 9.056 12.071 hybrid contribution 0.476 0.553 -1.200 1.404 sum -4.527 -5.667 7.856 10.692 Atomic orbital electron populations 1.23501 0.75350 1.05611 1.02016 1.86503 1.24640 1.32529 1.84102 1.25342 0.93781 0.81347 0.71823 1.90691 1.67551 1.37734 1.45434 1.21011 0.86470 0.85984 1.07260 1.41431 1.66381 1.07971 1.04702 1.20131 1.25508 1.15304 0.87272 0.89733 1.27318 0.92662 1.00205 1.00221 1.68555 1.21539 1.24210 1.34616 0.85236 0.77309 0.78157 0.79180 1.21191 1.20602 1.18013 1.17327 0.81870 0.84586 0.80146 1.90494 1.47770 1.27406 1.76855 1.20391 0.98377 0.99053 0.95186 1.21005 0.89272 0.89463 1.00079 1.20430 0.95098 1.05428 0.94672 1.50381 1.01338 0.99014 1.02589 1.96297 1.82561 1.62826 0.96764 1.96263 1.36606 1.60166 1.44037 1.17595 0.90129 0.93826 0.82298 1.91663 1.69225 1.83791 1.63145 1.21372 0.92885 0.97813 1.03669 1.20637 0.94251 0.90734 0.90373 1.21035 0.94568 0.98051 1.03284 0.84410 0.92513 0.92710 0.84631 0.86476 0.90987 0.82678 0.77244 0.89615 0.91863 0.86648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.82 16 2 O -0.36 -10.41 10.56 -51.40 -0.54 -10.96 16 3 C 0.44 15.83 8.02 71.24 0.57 16.40 16 4 O -0.53 -23.74 16.18 21.97 0.36 -23.39 16 5 C 0.12 4.19 5.68 85.63 0.49 4.68 16 6 N -0.48 -21.95 1.53 -638.31 -0.98 -22.92 16 7 C -0.35 -17.88 9.67 86.70 0.84 -17.04 16 8 H 0.08 4.19 7.98 -2.91 -0.02 4.17 16 9 C 0.01 0.32 5.16 87.30 0.45 0.77 16 10 N -0.85 -44.52 11.35 23.26 0.26 -44.26 16 11 Si 0.98 41.90 29.67 68.60 2.04 43.93 16 12 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 13 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 14 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 15 C 0.57 26.00 3.91 86.70 0.34 26.34 16 16 O -0.55 -28.72 14.09 -3.68 -0.05 -28.77 16 17 C -0.12 -4.60 5.26 -20.09 -0.11 -4.71 16 18 C 0.02 0.79 8.01 22.53 0.18 0.97 16 19 C -0.07 -2.24 6.88 36.38 0.25 -1.99 16 20 N -0.01 -0.26 4.98 -46.45 -0.23 -0.49 16 21 O -0.20 -7.74 19.15 3.51 0.07 -7.68 16 22 O -0.18 -6.54 18.08 3.52 0.06 -6.47 16 23 C 0.18 4.95 7.27 22.49 0.16 5.12 16 24 F -0.10 -2.67 15.39 44.97 0.69 -1.98 16 25 C -0.14 -3.00 9.64 22.27 0.21 -2.79 16 26 C 0.04 1.20 5.91 -19.60 -0.12 1.08 16 27 C -0.11 -2.98 8.65 71.24 0.62 -2.36 16 28 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 30 H 0.05 1.27 8.13 -2.38 -0.02 1.25 16 31 H 0.14 4.18 8.03 -2.39 -0.02 4.16 16 32 H 0.12 3.48 6.68 -2.39 -0.02 3.46 16 33 H 0.28 14.07 8.27 -92.71 -0.77 13.31 16 34 H 0.16 6.08 7.16 -2.91 -0.02 6.06 16 35 H 0.21 2.47 8.06 -2.91 -0.02 2.45 16 36 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 37 H 0.06 2.10 6.37 -2.39 -0.02 2.08 16 38 H 0.12 1.83 8.05 -2.39 -0.02 1.81 16 Total: -1.00 -71.05 350.08 7.90 -63.15 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.14 Total: 11.54 kcal Atomic # 6 Polarization: 23.21 SS G_CDS: 5.09 Total: 28.29 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -0.94 Total: -67.67 kcal Atomic # 8 Polarization: -77.16 SS G_CDS: -0.11 Total: -77.27 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.69 Total: -1.98 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.04 Total: 43.93 kcal Total: -71.05 7.90 -63.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001360964444.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.384 kcal (2) G-P(sol) polarization free energy of solvation -71.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds