Wall clock time and date at job start Sat Apr 11 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99582 * 2 1 4 4 H 1.48499 * 109.46964 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47242 * 300.00008 * 3 2 1 6 6 H 1.48496 * 109.47450 * 60.00109 * 3 2 1 7 7 C 1.37874 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99773 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00341 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.46734 * 60.00304 * 9 7 2 11 11 N 1.46495 * 109.47238 * 180.02562 * 9 7 2 12 12 C 1.34779 * 119.99891 * 204.99910 * 11 9 7 13 13 O 1.21518 * 119.99905 * 0.02562 * 12 11 9 14 14 C 1.48163 * 119.99912 * 179.97438 * 12 11 9 15 15 C 1.39235 * 119.68737 * 180.02562 * 14 12 11 16 16 C 1.38711 * 119.19226 * 180.02562 * 15 14 12 17 17 C 1.38414 * 118.55315 * 359.74974 * 16 15 14 18 18 C 1.39260 * 119.29938 * 0.47450 * 17 16 15 19 19 N 1.39823 * 119.61834 * 179.79733 * 18 17 16 20 20 C 1.35842 * 126.10119 * 179.74794 * 19 18 17 21 21 C 1.35282 * 107.60961 * 179.71200 * 20 19 18 22 22 C 1.39956 * 107.96962 * 0.38983 * 21 20 19 23 23 N 1.30821 * 108.36748 * 359.59823 * 22 21 20 24 24 N 1.31980 * 120.76608 * 359.51192 * 18 17 16 25 25 C 1.53001 * 109.47004 * 300.00640 * 9 7 2 26 26 F 1.39895 * 109.46892 * 299.99547 * 25 9 7 27 27 F 1.39903 * 109.47138 * 59.99712 * 25 9 7 28 28 F 1.39901 * 109.46971 * 179.97438 * 25 9 7 29 29 H 0.96999 * 120.00259 * 359.97438 * 1 2 3 30 30 H 0.96994 * 120.00001 * 25.00373 * 11 9 7 31 31 H 1.08002 * 120.39986 * 359.97438 * 15 14 12 32 32 H 1.07999 * 120.72151 * 180.02562 * 16 15 14 33 33 H 1.07999 * 120.34500 * 180.24497 * 17 16 15 34 34 H 1.07998 * 126.19901 * 359.91530 * 20 19 18 35 35 H 1.08003 * 126.01630 * 180.23037 * 21 20 19 36 36 H 1.08002 * 125.81889 * 179.87049 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6242 -2.5567 -0.8904 11 7 2.2032 -3.6126 -0.0005 12 6 1.8371 -4.8123 -0.4938 13 8 0.7174 -4.9701 -0.9390 14 6 2.8001 -5.9382 -0.4943 15 6 2.4152 -7.1746 -1.0060 16 6 3.3249 -8.2218 -1.0009 17 6 4.5909 -7.9959 -0.4891 18 6 4.9088 -6.7358 0.0114 19 7 6.1843 -6.5014 0.5340 20 6 6.6350 -5.3281 1.0493 21 6 7.9126 -5.5211 1.4501 22 6 8.2590 -6.8469 1.1653 23 7 7.2252 -7.4351 0.6205 24 7 4.0218 -5.7586 -0.0069 25 6 0.3719 -2.5805 1.2490 26 9 1.1766 -2.5066 2.3909 27 9 -0.5373 -1.5171 1.2494 28 9 -0.3280 -3.7918 1.2487 29 1 -0.4850 0.8400 0.0004 30 1 3.0969 -3.4865 0.3545 31 1 1.4202 -7.3167 -1.4012 32 1 3.0527 -9.1910 -1.3920 33 1 5.3232 -8.7895 -0.4746 34 1 6.0739 -4.4087 1.1281 35 1 8.5534 -4.7815 1.9070 36 1 9.2152 -7.3073 1.3654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361641298.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:19 Heat of formation + Delta-G solvation = -40.510922 kcal Electronic energy + Delta-G solvation = -29441.081844 eV Core-core repulsion = 24706.608547 eV Total energy + Delta-G solvation = -4734.473297 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.39749 -46.05342 -45.65720 -41.71474 -40.37887 -38.58705 -34.86279 -33.77598 -33.10592 -32.37253 -30.51774 -29.71465 -28.46058 -24.94548 -24.52402 -24.22108 -22.10634 -21.09608 -21.00951 -20.02271 -18.72487 -17.81645 -16.91709 -16.86883 -16.66166 -16.22382 -16.16759 -15.75838 -15.40591 -15.05335 -14.87623 -14.50741 -14.27304 -13.91046 -13.53115 -13.30545 -13.13590 -12.96353 -12.91483 -12.59129 -12.45292 -12.36005 -12.29040 -12.02514 -11.86152 -11.22949 -11.07770 -10.91340 -10.87730 -10.64878 -10.49937 -10.28423 -10.12991 -9.70724 -9.47883 -9.34975 -8.77824 -8.50789 -8.34529 -6.28159 -4.52110 0.39472 0.72047 1.85979 1.89588 2.58169 2.97972 3.15999 3.23254 3.26583 3.47012 3.84645 4.00927 4.17450 4.26268 4.51184 4.68971 4.78955 4.82718 4.85301 4.89092 5.08657 5.30631 5.35832 5.50895 5.71896 5.76276 5.78235 5.81546 5.90563 6.14888 6.16687 6.33275 6.82256 6.86518 6.99866 7.13439 7.40233 7.58230 7.62048 8.19916 8.43405 8.68217 9.15712 10.63635 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.003807 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.730558 B = 7352.889542 C = 8756.594718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.242 3.758 10 H 0.088 0.912 11 N -0.686 5.686 12 C 0.560 3.440 13 O -0.522 6.522 14 C 0.128 3.872 15 C -0.126 4.126 16 C -0.058 4.058 17 C -0.150 4.150 18 C 0.368 3.632 19 N -0.326 5.326 20 C 0.085 3.915 21 C -0.268 4.268 22 C 0.063 3.937 23 N -0.289 5.289 24 N -0.481 5.481 25 C 0.417 3.583 26 F -0.208 7.208 27 F -0.135 7.135 28 F -0.218 7.218 29 H 0.268 0.732 30 H 0.408 0.592 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.186 0.814 35 H 0.157 0.843 36 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.662 -12.586 0.402 17.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.588 4.588 8 H 0.097 0.903 9 C 0.137 3.863 10 H 0.106 0.894 11 N -0.335 5.335 12 C 0.343 3.657 13 O -0.397 6.397 14 C -0.012 4.012 15 C -0.148 4.148 16 C -0.084 4.084 17 C -0.172 4.172 18 C 0.138 3.862 19 N -0.104 5.104 20 C -0.057 4.057 21 C -0.296 4.296 22 C -0.125 4.125 23 N -0.108 5.108 24 N -0.196 5.196 25 C 0.361 3.639 26 F -0.190 7.190 27 F -0.116 7.116 28 F -0.200 7.200 29 H 0.079 0.921 30 H 0.244 0.756 31 H 0.175 0.825 32 H 0.169 0.831 33 H 0.168 0.832 34 H 0.203 0.797 35 H 0.174 0.826 36 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 10.296 -12.772 -0.087 16.405 hybrid contribution 0.875 0.927 0.630 1.422 sum 11.171 -11.844 0.543 16.290 Atomic orbital electron populations 1.70401 1.05868 1.27369 1.43588 1.25078 0.95164 1.00154 0.93955 0.86140 0.79844 0.81847 0.77918 1.19340 1.20531 1.20518 1.20897 0.93887 0.87880 1.56133 0.90264 1.19860 0.88723 0.85746 0.92012 0.89403 1.45962 1.17732 1.09777 1.60014 1.17810 0.86082 0.82429 0.79358 1.90810 1.19653 1.82569 1.46704 1.21156 0.89272 0.94881 0.95860 1.22205 1.02068 0.91952 0.98536 1.21542 0.91666 0.99672 0.95514 1.21764 0.98541 0.96590 1.00335 1.17574 0.83102 0.90446 0.95032 1.45774 1.08518 1.09023 1.47073 1.23068 0.95672 0.91459 0.95461 1.21677 0.96689 0.98260 1.13007 1.24137 0.97900 0.93946 0.96528 1.77403 0.95249 1.14145 1.24021 1.66709 1.02303 1.33059 1.17576 1.23105 0.80850 0.72859 0.87097 1.92997 1.74351 1.96171 1.55445 1.93412 1.68314 1.53701 1.96192 1.93069 1.81473 1.48471 1.96976 0.92096 0.75609 0.82474 0.83077 0.83150 0.79665 0.82560 0.79106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.61 9.50 55.43 0.53 -22.08 16 2 C 0.07 1.67 5.20 -17.82 -0.09 1.58 16 3 Si 0.92 19.83 29.54 -169.99 -5.02 14.81 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.55 -13.86 8.46 -34.44 -0.29 -14.15 16 8 H 0.08 1.90 7.74 -52.49 -0.41 1.49 16 9 C 0.24 5.94 2.21 -69.08 -0.15 5.78 16 10 H 0.09 2.37 7.58 -51.93 -0.39 1.98 16 11 N -0.69 -14.32 4.97 -55.78 -0.28 -14.59 16 12 C 0.56 11.16 7.34 -12.18 -0.09 11.07 16 13 O -0.52 -11.69 14.89 5.35 0.08 -11.61 16 14 C 0.13 2.06 6.75 -83.02 -0.56 1.50 16 15 C -0.13 -1.63 9.63 -39.04 -0.38 -2.01 16 16 C -0.06 -0.58 10.16 -39.34 -0.40 -0.98 16 17 C -0.15 -1.70 9.70 -39.14 -0.38 -2.08 16 18 C 0.37 5.11 7.55 -154.52 -1.17 3.94 16 19 N -0.33 -4.35 3.81 -12.10 -0.05 -4.39 16 20 C 0.09 1.02 11.10 -16.83 -0.19 0.83 16 21 C -0.27 -2.62 10.80 -39.99 -0.43 -3.05 16 22 C 0.06 0.60 12.02 -17.34 -0.21 0.40 16 23 N -0.29 -3.55 11.83 30.64 0.36 -3.18 16 24 N -0.48 -7.39 9.03 -8.85 -0.08 -7.47 16 25 C 0.42 10.60 2.81 37.16 0.10 10.70 16 26 F -0.21 -5.12 16.94 2.25 0.04 -5.08 16 27 F -0.14 -3.69 12.91 2.25 0.03 -3.66 16 28 F -0.22 -5.46 15.68 2.25 0.04 -5.42 16 29 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.41 7.79 7.87 -40.82 -0.32 7.47 16 31 H 0.16 1.91 7.63 -52.49 -0.40 1.51 16 32 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.15 1.48 7.68 -52.49 -0.40 1.08 16 34 H 0.19 2.06 8.05 -52.49 -0.42 1.64 16 35 H 0.16 1.13 8.06 -52.48 -0.42 0.70 16 36 H 0.19 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 333.18 15.07 5.02 5.02 Total: -1.00 -30.87 333.18 -6.31 -37.19 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -2.75 Total: 6.95 kcal Atomic # 6 Polarization: 17.76 SS G_CDS: -4.23 Total: 13.53 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.49 Total: -51.72 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 9 Polarization: -14.27 SS G_CDS: 0.10 Total: -14.17 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.87 -6.31 -37.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361641298.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.326 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds