Wall clock time and date at job start Sat Apr 11 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00452 * 2 1 4 4 H 1.48501 * 109.47249 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47190 * 299.99522 * 3 2 1 6 6 H 1.48496 * 109.47428 * 59.99422 * 3 2 1 7 7 C 1.37882 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00408 * 181.98061 * 7 2 1 9 9 C 1.50704 * 119.99931 * 1.98291 * 7 2 1 10 10 H 1.08992 * 109.47227 * 175.32411 * 9 7 2 11 11 C 1.50702 * 109.47167 * 55.32715 * 9 7 2 12 12 O 1.21286 * 119.99929 * 239.73113 * 11 9 7 13 13 N 1.34772 * 120.00244 * 59.99714 * 11 9 7 14 14 C 1.39863 * 120.00417 * 180.02562 * 13 11 9 15 15 N 1.31168 * 125.60063 * 359.69208 * 14 13 11 16 16 N 1.40439 * 106.75773 * 179.89444 * 15 14 13 17 17 H 0.97001 * 126.76731 * 180.11301 * 16 15 14 18 18 C 1.34377 * 106.46570 * 0.36974 * 16 15 14 19 19 C 1.50698 * 125.90093 * 179.77582 * 18 16 15 20 20 F 1.39897 * 109.47328 * 194.97652 * 19 18 16 21 21 F 1.39904 * 109.47086 * 314.97776 * 19 18 16 22 22 F 1.39902 * 109.46848 * 74.97456 * 19 18 16 23 23 N 1.30857 * 108.20147 * 359.77480 * 18 16 15 24 24 C 1.50706 * 109.47022 * 295.33096 * 9 7 2 25 25 C 1.38236 * 119.99875 * 346.99351 * 24 9 7 26 26 C 1.38236 * 119.99646 * 179.79379 * 25 24 9 27 27 C 1.38231 * 120.00298 * 0.43960 * 26 25 24 28 28 C 1.38235 * 119.99802 * 359.81381 * 27 26 25 29 29 C 1.38234 * 119.99979 * 167.27173 * 24 9 7 30 30 H 0.97003 * 119.99423 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99678 * 0.02562 * 13 11 9 32 32 H 1.07994 * 119.99737 * 359.97438 * 25 24 9 33 33 H 1.07998 * 119.99450 * 180.27427 * 26 25 24 34 34 H 1.07997 * 120.00282 * 179.83727 * 27 26 25 35 35 H 1.08000 * 120.00188 * 180.02562 * 28 27 26 36 36 H 1.08004 * 120.00198 * 359.97360 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8907 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0840 -1.1945 0.0329 9 6 1.2516 -2.4988 -0.0440 10 1 1.9592 -3.3242 -0.1206 11 6 0.3359 -2.5098 -1.2409 12 8 -0.8608 -2.6345 -1.0877 13 7 0.8471 -2.3863 -2.4817 14 6 -0.0028 -2.3959 -3.5925 15 7 -1.3076 -2.5239 -3.5544 16 7 -1.7579 -2.4783 -4.8839 17 1 -2.6765 -2.5447 -5.1884 18 6 -0.6648 -2.3304 -5.6514 19 6 -0.6472 -2.2362 -7.1553 20 9 0.6582 -2.4303 -7.6195 21 9 -1.4846 -3.2191 -7.6939 22 9 -1.0989 -0.9720 -7.5487 23 7 0.3817 -2.2821 -4.8673 24 6 0.4359 -2.6513 1.2140 25 6 0.6640 -1.8156 2.2912 26 6 -0.0872 -1.9527 3.4435 27 6 -1.0602 -2.9313 3.5220 28 6 -1.2848 -3.7704 2.4466 29 6 -0.5366 -3.6306 1.2927 30 1 -0.4849 0.8401 -0.0004 31 1 1.8046 -2.2908 -2.6045 32 1 1.4271 -1.0537 2.2314 33 1 0.0881 -1.2968 4.2835 34 1 -1.6453 -3.0401 4.4232 35 1 -2.0453 -4.5348 2.5077 36 1 -0.7121 -4.2862 0.4525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361645425.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:23 Heat of formation + Delta-G solvation = -51.485053 kcal Electronic energy + Delta-G solvation = -29228.180088 eV Core-core repulsion = 24493.230917 eV Total energy + Delta-G solvation = -4734.949171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.57333 -48.13848 -48.00991 -42.24541 -39.20168 -37.61770 -34.34728 -33.78218 -32.31186 -31.26410 -30.84251 -29.74218 -27.48929 -26.90127 -24.30984 -22.94327 -21.76145 -21.31315 -20.42046 -19.54106 -19.23481 -18.98315 -18.59673 -17.50963 -16.68872 -16.14215 -15.82301 -15.60303 -15.22452 -14.93306 -14.86285 -14.78924 -14.47344 -14.17591 -14.15000 -14.13563 -13.71675 -13.48203 -13.23814 -12.79118 -12.38628 -12.27109 -12.16210 -12.05052 -11.40272 -11.06616 -10.94468 -10.77927 -10.55047 -10.19580 -10.16825 -10.11709 -9.78458 -9.50656 -8.86420 -8.59342 -8.33870 -7.76599 -7.50150 -6.25756 -4.43656 1.17430 1.67037 2.36069 2.51960 2.55049 2.71326 2.96801 3.15315 3.26166 3.27117 3.61369 3.72765 3.89061 4.06561 4.24649 4.65463 4.92380 5.00967 5.51360 5.80981 5.90959 5.99572 6.02185 6.21163 6.33669 6.59412 6.62426 6.71247 6.78014 7.04167 7.13420 7.15382 7.48390 7.50693 7.57071 7.60567 7.67138 8.07029 8.17589 8.38782 8.62775 9.22312 9.28358 10.74481 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.003533 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.349070 B = 7924.391828 C = 9179.343276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.066 3.934 10 H 0.067 0.933 11 C 0.545 3.455 12 O -0.490 6.490 13 N -0.621 5.621 14 C 0.465 3.535 15 N -0.251 5.251 16 N -0.450 5.450 17 H 0.446 0.554 18 C 0.195 3.805 19 C 0.566 3.434 20 F -0.145 7.145 21 F -0.165 7.165 22 F -0.160 7.160 23 N -0.503 5.503 24 C -0.018 4.018 25 C -0.062 4.062 26 C -0.147 4.147 27 C -0.142 4.142 28 C -0.143 4.143 29 C -0.101 4.101 30 H 0.267 0.733 31 H 0.424 0.576 32 H 0.129 0.871 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.953 -5.089 -9.491 10.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.583 4.583 8 H 0.092 0.908 9 C 0.045 3.955 10 H 0.084 0.916 11 C 0.333 3.667 12 O -0.358 6.358 13 N -0.276 5.276 14 C 0.096 3.904 15 N -0.088 5.088 16 N -0.173 5.173 17 H 0.293 0.707 18 C -0.088 4.088 19 C 0.508 3.492 20 F -0.127 7.127 21 F -0.146 7.146 22 F -0.141 7.141 23 N -0.238 5.238 24 C -0.019 4.019 25 C -0.080 4.080 26 C -0.165 4.165 27 C -0.160 4.160 28 C -0.161 4.161 29 C -0.119 4.119 30 H 0.077 0.923 31 H 0.262 0.738 32 H 0.147 0.853 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.985 -5.097 -8.661 10.244 hybrid contribution 0.021 1.361 -0.790 1.574 sum -1.964 -3.736 -9.451 10.351 Atomic orbital electron populations 1.70060 1.05538 1.27303 1.44428 1.25106 0.94895 0.99547 0.94049 0.86545 0.80362 0.83503 0.77936 1.19212 1.20914 1.20670 1.20786 0.93282 0.88343 1.55905 0.90804 1.17838 0.92369 0.98948 0.86380 0.91563 1.21817 0.90123 0.72408 0.82319 1.90661 1.16112 1.45188 1.83827 1.43338 1.09711 1.73053 1.01502 1.20782 0.87515 0.95746 0.86343 1.79119 1.10106 1.28804 0.90799 1.48038 1.09591 1.55122 1.04552 0.70735 1.23371 0.86192 1.05618 0.93592 1.16560 0.75076 0.74486 0.83047 1.93297 1.35530 1.94657 1.89168 1.93273 1.71738 1.62398 1.87191 1.93300 1.89003 1.40236 1.91610 1.70025 1.28711 1.24591 1.00431 1.19716 0.94773 0.92656 0.94786 1.21140 0.98443 0.97026 0.91354 1.21001 0.98099 0.99004 0.98390 1.20799 0.99452 0.97628 0.98125 1.20819 1.00524 1.00356 0.94390 1.20979 0.95979 0.98751 0.96231 0.92298 0.73767 0.85286 0.87921 0.88114 0.88007 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.32 10.90 55.43 0.60 -21.72 16 2 C 0.07 1.77 4.00 -17.82 -0.07 1.70 16 3 Si 0.89 19.38 29.54 -169.99 -5.02 14.36 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.55 -12.59 7.11 -34.44 -0.24 -12.84 16 8 H 0.07 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.07 1.46 2.78 -94.07 -0.26 1.20 16 10 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 11 C 0.54 12.45 5.42 -10.99 -0.06 12.39 16 12 O -0.49 -12.55 12.65 5.55 0.07 -12.48 16 13 N -0.62 -12.61 5.34 -12.82 -0.07 -12.68 16 14 C 0.46 9.28 8.83 -320.85 -2.83 6.45 16 15 N -0.25 -5.01 10.98 30.04 0.33 -4.68 16 16 N -0.45 -6.52 7.44 32.62 0.24 -6.28 16 17 H 0.45 4.56 8.96 -182.34 -1.63 2.92 16 18 C 0.19 2.81 7.49 -155.72 -1.17 1.64 16 19 C 0.57 6.34 3.57 36.00 0.13 6.47 16 20 F -0.15 -1.73 17.17 2.25 0.04 -1.69 16 21 F -0.16 -1.58 17.30 2.25 0.04 -1.54 16 22 F -0.16 -1.75 17.30 2.25 0.04 -1.71 16 23 N -0.50 -8.81 11.03 -11.07 -0.12 -8.93 16 24 C -0.02 -0.42 4.51 -104.62 -0.47 -0.89 16 25 C -0.06 -1.38 8.21 -39.58 -0.32 -1.70 16 26 C -0.15 -2.96 10.05 -39.58 -0.40 -3.36 16 27 C -0.14 -2.71 10.05 -39.58 -0.40 -3.11 16 28 C -0.14 -2.83 10.05 -39.58 -0.40 -3.23 16 29 C -0.10 -2.20 8.21 -39.58 -0.33 -2.53 16 30 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.42 7.59 8.71 -40.82 -0.36 7.24 16 32 H 0.13 2.97 6.04 -52.49 -0.32 2.65 16 33 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.11 2.31 7.01 -52.48 -0.37 1.94 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -30.09 330.38 -9.60 -39.69 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -3.91 Total: 10.47 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -6.82 Total: 2.21 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.99 Total: -54.28 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.07 Total: -12.48 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.12 Total: -4.94 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.09 -9.60 -39.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361645425.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.795 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds