Wall clock time and date at job start Sat Apr 11 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00452 * 2 1 4 4 H 1.48501 * 109.47249 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47190 * 299.99522 * 3 2 1 6 6 H 1.48496 * 109.47428 * 59.99422 * 3 2 1 7 7 C 1.37882 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00408 * 181.98061 * 7 2 1 9 9 C 1.50704 * 119.99931 * 1.98291 * 7 2 1 10 10 H 1.08992 * 109.47227 * 175.32411 * 9 7 2 11 11 C 1.50702 * 109.47167 * 55.32715 * 9 7 2 12 12 O 1.21286 * 119.99929 * 239.73113 * 11 9 7 13 13 N 1.34772 * 120.00244 * 59.99714 * 11 9 7 14 14 C 1.39863 * 120.00417 * 180.02562 * 13 11 9 15 15 N 1.31168 * 125.60063 * 359.69208 * 14 13 11 16 16 N 1.40439 * 106.75773 * 179.89444 * 15 14 13 17 17 H 0.97001 * 126.76731 * 180.11301 * 16 15 14 18 18 C 1.34377 * 106.46570 * 0.36974 * 16 15 14 19 19 C 1.50698 * 125.90093 * 179.77582 * 18 16 15 20 20 F 1.39897 * 109.47328 * 194.97652 * 19 18 16 21 21 F 1.39904 * 109.47086 * 314.97776 * 19 18 16 22 22 F 1.39902 * 109.46848 * 74.97456 * 19 18 16 23 23 N 1.30857 * 108.20147 * 359.77480 * 18 16 15 24 24 C 1.50706 * 109.47022 * 295.33096 * 9 7 2 25 25 C 1.38236 * 119.99875 * 346.99351 * 24 9 7 26 26 C 1.38236 * 119.99646 * 179.79379 * 25 24 9 27 27 C 1.38231 * 120.00298 * 0.43960 * 26 25 24 28 28 C 1.38235 * 119.99802 * 359.81381 * 27 26 25 29 29 C 1.38234 * 119.99979 * 167.27173 * 24 9 7 30 30 H 0.97003 * 119.99423 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99678 * 0.02562 * 13 11 9 32 32 H 1.07994 * 119.99737 * 359.97438 * 25 24 9 33 33 H 1.07998 * 119.99450 * 180.27427 * 26 25 24 34 34 H 1.07997 * 120.00282 * 179.83727 * 27 26 25 35 35 H 1.08000 * 120.00188 * 180.02562 * 28 27 26 36 36 H 1.08004 * 120.00198 * 359.97360 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8907 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0840 -1.1945 0.0329 9 6 1.2516 -2.4988 -0.0440 10 1 1.9592 -3.3242 -0.1206 11 6 0.3359 -2.5098 -1.2409 12 8 -0.8608 -2.6345 -1.0877 13 7 0.8471 -2.3863 -2.4817 14 6 -0.0028 -2.3959 -3.5925 15 7 -1.3076 -2.5239 -3.5544 16 7 -1.7579 -2.4783 -4.8839 17 1 -2.6765 -2.5447 -5.1884 18 6 -0.6648 -2.3304 -5.6514 19 6 -0.6472 -2.2362 -7.1553 20 9 0.6582 -2.4303 -7.6195 21 9 -1.4846 -3.2191 -7.6939 22 9 -1.0989 -0.9720 -7.5487 23 7 0.3817 -2.2821 -4.8673 24 6 0.4359 -2.6513 1.2140 25 6 0.6640 -1.8156 2.2912 26 6 -0.0872 -1.9527 3.4435 27 6 -1.0602 -2.9313 3.5220 28 6 -1.2848 -3.7704 2.4466 29 6 -0.5366 -3.6306 1.2927 30 1 -0.4849 0.8401 -0.0004 31 1 1.8046 -2.2908 -2.6045 32 1 1.4271 -1.0537 2.2314 33 1 0.0881 -1.2968 4.2835 34 1 -1.6453 -3.0401 4.4232 35 1 -2.0453 -4.5348 2.5077 36 1 -0.7121 -4.2862 0.4525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361645425.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:23 Heat of formation + Delta-G solvation = -67.310371 kcal Electronic energy + Delta-G solvation = -29228.866325 eV Core-core repulsion = 24493.230917 eV Total energy + Delta-G solvation = -4735.635408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.49843 -49.02799 -48.95348 -43.60158 -40.88376 -39.22893 -35.91794 -35.56896 -33.66778 -32.84588 -32.39851 -31.35028 -29.14353 -28.05593 -26.08596 -24.39438 -23.07982 -22.88332 -21.95611 -21.06619 -20.53968 -19.90890 -19.59701 -19.01326 -18.26689 -17.63253 -17.27695 -17.12231 -16.86440 -16.64221 -15.85241 -15.72914 -15.71519 -15.37650 -15.36947 -15.13318 -15.08434 -15.06688 -14.49847 -14.36336 -14.07777 -13.95961 -13.74701 -13.33894 -13.03912 -12.82241 -12.55392 -12.42126 -12.26328 -11.77648 -11.58956 -11.55308 -11.43521 -11.21613 -10.70911 -10.39325 -9.89381 -9.38078 -9.12727 -8.12276 -6.32155 -0.07923 0.56845 0.83723 0.92751 1.19194 1.21914 1.40837 1.47512 1.54954 1.88967 2.28161 2.38411 2.50265 2.67478 2.95760 3.15999 3.30091 3.38702 4.04885 4.33688 4.37296 4.50065 4.59416 4.65072 4.68942 4.95366 5.03114 5.14724 5.43790 5.52992 5.58788 5.60272 5.69563 5.89795 5.90367 5.96355 6.12018 6.40443 6.52750 6.74360 6.92646 7.37986 7.56303 8.86358 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.003533 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.349070 B = 7924.391828 C = 9179.343276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.253 1.253 5 H -0.295 1.295 6 H -0.286 1.286 7 C -0.534 4.534 8 H 0.082 0.918 9 C 0.057 3.943 10 H 0.085 0.915 11 C 0.547 3.453 12 O -0.523 6.523 13 N -0.619 5.619 14 C 0.449 3.551 15 N -0.291 5.291 16 N -0.432 5.432 17 H 0.464 0.536 18 C 0.208 3.792 19 C 0.583 3.417 20 F -0.145 7.145 21 F -0.149 7.149 22 F -0.153 7.153 23 N -0.519 5.519 24 C -0.037 4.037 25 C -0.083 4.083 26 C -0.151 4.151 27 C -0.139 4.139 28 C -0.146 4.146 29 C -0.118 4.118 30 H 0.256 0.744 31 H 0.432 0.568 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.137 0.863 35 H 0.128 0.872 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.999 -5.340 -9.865 11.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.177 1.177 5 H -0.222 1.222 6 H -0.212 1.212 7 C -0.572 4.572 8 H 0.100 0.900 9 C 0.036 3.964 10 H 0.103 0.897 11 C 0.336 3.664 12 O -0.393 6.393 13 N -0.274 5.274 14 C 0.080 3.920 15 N -0.129 5.129 16 N -0.157 5.157 17 H 0.315 0.685 18 C -0.075 4.075 19 C 0.525 3.475 20 F -0.126 7.126 21 F -0.130 7.130 22 F -0.135 7.135 23 N -0.253 5.253 24 C -0.038 4.038 25 C -0.101 4.101 26 C -0.169 4.169 27 C -0.157 4.157 28 C -0.164 4.164 29 C -0.136 4.136 30 H 0.065 0.935 31 H 0.272 0.728 32 H 0.133 0.867 33 H 0.144 0.856 34 H 0.155 0.845 35 H 0.146 0.854 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.012 -5.360 -9.073 10.729 hybrid contribution -0.005 1.373 -0.747 1.563 sum -2.017 -3.987 -9.820 10.789 Atomic orbital electron populations 1.70221 1.06881 1.26841 1.46853 1.25609 0.95120 1.01862 0.94024 0.85759 0.80180 0.80548 0.76855 1.17677 1.22218 1.21222 1.21014 0.93623 0.88613 1.53936 0.89976 1.17975 0.92738 0.99247 0.86443 0.89725 1.21813 0.89690 0.71848 0.83051 1.90626 1.17327 1.46829 1.84527 1.43082 1.10211 1.72710 1.01368 1.20834 0.87599 0.96636 0.86944 1.78995 1.10548 1.29644 0.93707 1.47840 1.10679 1.54117 1.03030 0.68517 1.23930 0.85332 1.03288 0.94972 1.16138 0.75303 0.74974 0.81076 1.93308 1.35770 1.94695 1.88874 1.93316 1.71218 1.61816 1.86631 1.93324 1.88915 1.39956 1.91257 1.70005 1.29954 1.25705 0.99680 1.19819 0.95586 0.93410 0.95007 1.21137 0.99252 0.97201 0.92497 1.21318 0.97752 0.99541 0.98337 1.21188 0.98964 0.96456 0.99118 1.21178 1.00444 1.00942 0.93813 1.21039 0.96623 0.98928 0.96998 0.93494 0.72820 0.86680 0.85583 0.84518 0.85368 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.30 10.90 21.45 0.23 -47.07 16 2 C 0.04 1.89 4.00 84.66 0.34 2.23 16 3 Si 0.94 39.95 29.54 68.60 2.03 41.98 16 4 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 5 H -0.30 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.53 -24.65 7.11 25.60 0.18 -24.47 16 8 H 0.08 3.58 7.81 -2.91 -0.02 3.56 16 9 C 0.06 2.57 2.78 -13.03 -0.04 2.53 16 10 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 11 C 0.55 25.48 5.42 87.66 0.48 25.96 16 12 O -0.52 -27.45 12.65 -3.05 -0.04 -27.49 16 13 N -0.62 -25.49 5.34 -312.87 -1.67 -27.16 16 14 C 0.45 18.03 8.83 260.80 2.30 20.33 16 15 N -0.29 -11.69 10.98 -58.89 -0.65 -12.33 16 16 N -0.43 -12.08 7.44 -50.72 -0.38 -12.46 16 17 H 0.46 8.81 8.96 -213.10 -1.91 6.90 16 18 C 0.21 5.71 7.49 138.23 1.04 6.75 16 19 C 0.58 11.77 3.57 71.24 0.25 12.03 16 20 F -0.15 -3.15 17.17 44.97 0.77 -2.38 16 21 F -0.15 -2.45 17.30 44.97 0.78 -1.67 16 22 F -0.15 -2.99 17.30 44.97 0.78 -2.21 16 23 N -0.52 -17.86 11.03 -188.94 -2.08 -19.94 16 24 C -0.04 -1.71 4.51 -19.86 -0.09 -1.80 16 25 C -0.08 -3.71 8.21 22.27 0.18 -3.53 16 26 C -0.15 -5.91 10.05 22.27 0.22 -5.69 16 27 C -0.14 -5.02 10.05 22.27 0.22 -4.79 16 28 C -0.15 -5.57 10.05 22.27 0.22 -5.35 16 29 C -0.12 -5.14 8.21 22.27 0.18 -4.96 16 30 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 31 H 0.43 15.64 8.71 -92.71 -0.81 14.83 16 32 H 0.12 5.36 6.04 -2.91 -0.02 5.34 16 33 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 34 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 35 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 36 H 0.10 4.40 7.01 -2.91 -0.02 4.38 16 Total: -1.00 -64.91 330.38 3.75 -61.15 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: -1.52 Total: 30.34 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: 5.50 Total: 19.24 kcal Atomic # 7 Polarization: -114.42 SS G_CDS: -4.54 Total: -118.96 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.04 Total: -27.49 kcal Atomic # 9 Polarization: -8.59 SS G_CDS: 2.33 Total: -6.26 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -64.91 3.75 -61.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361645425.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.157 kcal (2) G-P(sol) polarization free energy of solvation -64.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds