Wall clock time and date at job start Sat Apr 11 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99719 * 2 1 4 4 H 1.48500 * 109.47208 * 269.99801 * 3 2 1 5 5 H 1.48492 * 109.47321 * 30.00730 * 3 2 1 6 6 H 1.48507 * 109.46867 * 150.00156 * 3 2 1 7 7 C 1.37877 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99345 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00384 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00064 * 9 7 2 11 11 N 1.46500 * 109.46939 * 179.97438 * 9 7 2 12 12 C 1.34780 * 119.99910 * 205.00060 * 11 9 7 13 13 O 1.21569 * 119.99853 * 359.97438 * 12 11 9 14 14 C 1.47691 * 119.99851 * 180.02562 * 12 11 9 15 15 C 1.41566 * 126.43513 * 180.02562 * 14 12 11 16 16 C 1.35325 * 105.55500 * 179.97438 * 15 14 12 17 17 N 1.35911 * 107.11706 * 359.97438 * 16 15 14 18 18 C 1.39911 * 124.96178 * 180.02562 * 17 16 15 19 19 C 1.39325 * 120.86125 * 359.72238 * 18 17 16 20 20 C 1.38017 * 119.08226 * 179.70757 * 19 18 17 21 21 N 1.31930 * 120.83142 * 0.58147 * 20 19 18 22 22 C 1.31933 * 121.88673 * 359.71265 * 21 20 19 23 23 C 1.38020 * 120.83249 * 359.97438 * 22 21 20 24 24 N 1.28479 * 110.07041 * 359.76620 * 17 16 15 25 25 C 1.52997 * 109.47078 * 300.00152 * 9 7 2 26 26 F 1.39905 * 109.47157 * 299.99776 * 25 9 7 27 27 F 1.39900 * 109.47010 * 180.02562 * 25 9 7 28 28 F 1.39897 * 109.47422 * 59.99858 * 25 9 7 29 29 H 0.97006 * 120.00331 * 359.97438 * 1 2 3 30 30 H 0.96994 * 119.99975 * 25.00437 * 11 9 7 31 31 H 1.08001 * 127.21942 * 359.96000 * 15 14 12 32 32 H 1.08008 * 126.43886 * 180.02562 * 16 15 14 33 33 H 1.08008 * 120.45466 * 359.97438 * 19 18 17 34 34 H 1.07996 * 119.58374 * 180.29253 * 20 19 18 35 35 H 1.07999 * 119.58358 * 179.97438 * 22 21 20 36 36 H 1.07998 * 120.46110 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 2.2030 -3.6127 -0.0018 12 6 1.8365 -4.8121 -0.4953 13 8 0.7158 -4.9701 -0.9390 14 6 2.7961 -5.9348 -0.4961 15 6 2.5577 -7.2443 -0.9782 16 6 3.7117 -7.9214 -0.7753 17 7 4.5884 -7.0551 -0.2025 18 6 5.9010 -7.3692 0.1660 19 6 6.4129 -8.6493 -0.0354 20 6 7.7148 -8.9173 0.3363 21 7 8.4671 -7.9831 0.8858 22 6 8.0169 -6.7613 1.0982 23 6 6.7282 -6.4116 0.7489 24 7 4.0373 -5.9040 -0.0538 25 6 0.3718 -2.5805 1.2490 26 9 1.1766 -2.5067 2.3910 27 9 -0.3272 -3.7923 1.2493 28 9 -0.5373 -1.5172 1.2496 29 1 -0.4851 0.8401 0.0004 30 1 3.0970 -3.4867 0.3526 31 1 1.6461 -7.6234 -1.4158 32 1 3.9008 -8.9555 -1.0230 33 1 5.8008 -9.4200 -0.4802 34 1 8.1214 -9.9055 0.1795 35 1 8.6649 -6.0256 1.5511 36 1 6.3660 -5.4095 0.9252 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361667347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:26 Heat of formation + Delta-G solvation = -42.203484 kcal Electronic energy + Delta-G solvation = -29093.127669 eV Core-core repulsion = 24358.580977 eV Total energy + Delta-G solvation = -4734.546692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.35517 -46.00749 -45.61996 -43.07943 -40.37581 -38.76196 -34.78121 -34.59152 -32.63085 -32.03019 -30.83530 -30.58112 -28.41296 -25.14172 -24.53466 -24.25302 -22.72089 -21.41457 -21.13389 -19.73786 -18.97769 -17.75777 -16.85819 -16.71253 -16.62780 -16.42371 -16.33622 -16.26442 -15.73201 -15.30617 -14.91327 -14.38393 -14.23881 -14.20853 -13.85529 -13.72240 -13.46471 -13.01367 -12.92136 -12.49500 -12.39992 -12.28047 -12.19026 -11.98775 -11.82467 -11.22911 -11.04989 -11.03736 -10.84998 -10.79292 -10.43664 -10.07358 -9.70899 -9.69348 -9.59747 -9.45876 -8.88866 -8.73388 -8.30936 -6.24943 -4.48773 0.27687 0.62093 1.83299 2.02331 2.09337 3.18529 3.24964 3.28012 3.36452 3.64809 3.75015 3.96473 3.99280 4.20447 4.25605 4.52406 4.56062 4.57398 4.72020 4.92095 4.96092 5.18960 5.25433 5.32785 5.46247 5.60516 5.65114 5.82500 5.85711 6.07352 6.19487 6.25510 6.60586 6.88631 7.09545 7.43281 7.48369 7.61419 7.66340 8.27859 8.47780 8.76551 9.18811 10.66852 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.014954 B = 0.003174 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.987640 B = 8819.882678 C = 9921.118547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.552 4.552 8 H 0.079 0.921 9 C 0.244 3.756 10 H 0.088 0.912 11 N -0.694 5.694 12 C 0.591 3.409 13 O -0.523 6.523 14 C 0.021 3.979 15 C -0.164 4.164 16 C -0.019 4.019 17 N -0.249 5.249 18 C 0.193 3.807 19 C -0.188 4.188 20 C 0.124 3.876 21 N -0.491 5.491 22 C 0.125 3.875 23 C -0.166 4.166 24 N -0.257 5.257 25 C 0.417 3.583 26 F -0.208 7.208 27 F -0.217 7.217 28 F -0.135 7.135 29 H 0.269 0.731 30 H 0.405 0.595 31 H 0.172 0.828 32 H 0.187 0.813 33 H 0.145 0.855 34 H 0.167 0.833 35 H 0.169 0.831 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.343 -15.579 -0.265 19.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.589 4.589 8 H 0.097 0.903 9 C 0.139 3.861 10 H 0.106 0.894 11 N -0.343 5.343 12 C 0.373 3.627 13 O -0.397 6.397 14 C -0.143 4.143 15 C -0.191 4.191 16 C -0.157 4.157 17 N -0.031 5.031 18 C 0.093 3.907 19 C -0.211 4.211 20 C -0.033 4.033 21 N -0.200 5.200 22 C -0.032 4.032 23 C -0.188 4.188 24 N -0.089 5.089 25 C 0.361 3.639 26 F -0.190 7.190 27 F -0.199 7.199 28 F -0.117 7.117 29 H 0.079 0.921 30 H 0.240 0.760 31 H 0.189 0.811 32 H 0.204 0.796 33 H 0.163 0.837 34 H 0.184 0.816 35 H 0.186 0.814 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 12.989 -15.045 0.178 19.877 hybrid contribution -0.896 0.484 -0.141 1.028 sum 12.093 -14.561 0.037 18.928 Atomic orbital electron populations 1.70397 1.05856 1.27431 1.43570 1.25079 0.95165 1.00125 0.93992 0.86195 0.79616 0.81559 0.78385 1.20165 1.20769 1.19477 1.20872 0.93862 0.87964 1.56184 0.90343 1.19812 0.88694 0.85654 0.91964 0.89423 1.45964 1.17560 1.09954 1.60818 1.16911 0.85502 0.81390 0.78853 1.90811 1.19526 1.82509 1.46803 1.22478 0.91493 0.96640 1.03704 1.21940 0.99465 0.92500 1.05150 1.23031 0.90233 0.98418 1.04053 1.42671 1.09282 1.07479 1.43624 1.17927 0.81306 0.94730 0.96741 1.21901 0.98585 0.95252 1.05360 1.22682 0.89117 0.98914 0.92605 1.67717 1.37644 1.01742 1.12931 1.22813 0.92622 0.93289 0.94475 1.22115 0.94883 1.01364 1.00429 1.73605 1.09469 1.05129 1.20654 1.23104 0.80849 0.72852 0.87105 1.92996 1.74376 1.96179 1.55474 1.93071 1.81500 1.48389 1.96975 1.93408 1.68336 1.53716 1.96197 0.92066 0.76004 0.81058 0.79644 0.83695 0.81603 0.81437 0.82650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.91 9.50 55.43 0.53 -22.39 16 2 C 0.07 1.70 5.20 -17.82 -0.09 1.60 16 3 Si 0.92 20.08 29.54 -169.99 -5.02 15.06 16 4 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.55 -14.15 8.46 -34.44 -0.29 -14.44 16 8 H 0.08 1.91 7.74 -52.48 -0.41 1.50 16 9 C 0.24 6.12 2.21 -69.08 -0.15 5.97 16 10 H 0.09 2.42 7.58 -51.93 -0.39 2.02 16 11 N -0.69 -14.90 4.98 -55.93 -0.28 -15.18 16 12 C 0.59 12.30 7.36 -12.40 -0.09 12.21 16 13 O -0.52 -12.30 15.49 5.31 0.08 -12.22 16 14 C 0.02 0.35 7.13 -82.75 -0.59 -0.24 16 15 C -0.16 -2.21 10.80 -39.35 -0.42 -2.63 16 16 C -0.02 -0.20 10.82 -16.78 -0.18 -0.39 16 17 N -0.25 -3.11 3.51 -10.37 -0.04 -3.14 16 18 C 0.19 2.00 6.70 -83.36 -0.56 1.44 16 19 C -0.19 -1.39 9.50 -39.26 -0.37 -1.76 16 20 C 0.12 0.88 11.17 -17.59 -0.20 0.68 16 21 N -0.49 -4.47 10.36 -13.32 -0.14 -4.61 16 22 C 0.12 1.06 11.17 -17.59 -0.20 0.87 16 23 C -0.17 -1.65 9.67 -39.26 -0.38 -2.03 16 24 N -0.26 -3.98 10.94 33.43 0.37 -3.61 16 25 C 0.42 10.79 2.81 37.16 0.10 10.90 16 26 F -0.21 -5.23 16.94 2.25 0.04 -5.19 16 27 F -0.22 -5.56 15.67 2.25 0.04 -5.53 16 28 F -0.14 -3.75 12.91 2.25 0.03 -3.72 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.41 7.94 8.26 -40.82 -0.34 7.60 16 31 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 32 H 0.19 1.08 7.04 -52.48 -0.37 0.71 16 33 H 0.15 0.65 6.78 -52.48 -0.36 0.30 16 34 H 0.17 0.64 8.06 -52.49 -0.42 0.21 16 35 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.16 1.59 7.74 -52.49 -0.41 1.18 16 LS Contribution 331.80 15.07 5.00 5.00 Total: -1.00 -32.30 331.80 -5.49 -37.79 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -2.67 Total: 5.56 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: -3.42 Total: 12.18 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.44 Total: -48.93 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.08 Total: -12.22 kcal Atomic # 9 Polarization: -14.54 SS G_CDS: 0.10 Total: -14.44 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.30 -5.49 -37.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361667347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.414 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds