Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00217 * 2 1 4 4 H 1.48503 * 109.47237 * 272.07250 * 3 2 1 5 5 H 1.48499 * 109.46776 * 32.06953 * 3 2 1 6 6 H 1.48492 * 109.47420 * 152.07090 * 3 2 1 7 7 C 1.37882 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99632 * 2.48755 * 7 2 1 9 9 C 1.50700 * 120.00200 * 182.48746 * 7 2 1 10 10 H 1.09000 * 109.47072 * 333.39500 * 9 7 2 11 11 N 1.46499 * 109.47066 * 93.39208 * 9 7 2 12 12 C 1.34775 * 120.00167 * 204.99936 * 11 9 7 13 13 O 1.21586 * 119.99784 * 0.02562 * 12 11 9 14 14 C 1.47589 * 120.00389 * 180.02562 * 12 11 9 15 15 C 1.39969 * 120.59297 * 320.32200 * 14 12 11 16 16 C 1.38352 * 118.34368 * 179.71290 * 15 14 12 17 17 C 1.38392 * 119.45529 * 0.60272 * 16 15 14 18 18 N 1.31838 * 121.18127 * 359.65642 * 17 16 15 19 19 C 1.32254 * 121.80313 * 0.02562 * 18 17 16 20 20 N 1.39357 * 119.79942 * 179.97438 * 19 18 17 21 21 C 1.35933 * 126.10478 * 332.52524 * 20 19 18 22 22 C 1.35238 * 107.59900 * 179.83413 * 21 20 19 23 23 C 1.40007 * 107.97483 * 0.42767 * 22 21 20 24 24 N 1.30790 * 108.37975 * 359.73189 * 23 22 21 25 25 C 1.53001 * 109.47132 * 213.39592 * 9 7 2 26 26 F 1.39902 * 109.46627 * 294.88563 * 25 9 7 27 27 F 1.39897 * 109.46791 * 174.88914 * 25 9 7 28 28 F 1.39892 * 109.47190 * 54.88742 * 25 9 7 29 29 H 0.97003 * 120.00541 * 0.02562 * 1 2 3 30 30 H 0.96996 * 119.99721 * 25.00066 * 11 9 7 31 31 H 1.08000 * 120.82729 * 0.02562 * 15 14 12 32 32 H 1.08002 * 120.27198 * 180.26471 * 16 15 14 33 33 H 1.07997 * 119.40479 * 179.68172 * 17 16 15 34 34 H 1.07997 * 126.20391 * 359.97438 * 21 20 19 35 35 H 1.08000 * 126.01379 * 180.15960 * 22 21 20 36 36 H 1.07995 * 125.81223 * 179.71738 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4528 2.0718 -1.3992 5 1 1.4692 2.6396 0.7434 6 1 3.5679 1.4279 0.6557 7 6 2.0045 -1.1941 -0.0005 8 1 1.4652 -2.1289 -0.0415 9 6 3.5104 -1.1947 0.0561 10 1 3.8904 -0.2660 -0.3697 11 7 3.9466 -1.3072 1.4501 12 6 5.1558 -0.8390 1.8178 13 8 5.8845 -0.3230 0.9925 14 6 5.5955 -0.9528 3.2220 15 6 4.6943 -0.7348 4.2706 16 6 5.1549 -0.8596 5.5692 17 6 6.4824 -1.1805 5.7925 18 7 7.3154 -1.3763 4.7896 19 6 6.9254 -1.2756 3.5299 20 7 7.8415 -1.4907 2.5020 21 6 9.1847 -1.2934 2.5718 22 6 9.7090 -1.6204 1.3688 23 6 8.6587 -2.0204 0.5340 24 7 7.5419 -1.9433 1.2104 25 6 4.0504 -2.3814 -0.7446 26 9 3.6586 -3.5755 -0.1300 27 9 5.4472 -2.3165 -0.7898 28 9 3.5392 -2.3371 -2.0460 29 1 -0.4851 0.8400 -0.0004 30 1 3.3652 -1.7185 2.1085 31 1 3.6639 -0.4806 4.0708 32 1 4.4852 -0.7024 6.4018 33 1 6.8423 -1.2727 6.8066 34 1 9.7339 -0.9417 3.4326 35 1 10.7536 -1.5761 1.0982 36 1 8.7542 -2.3382 -0.4937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361766903.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = -71.175523 kcal Electronic energy + Delta-G solvation = -30694.954432 eV Core-core repulsion = 25959.151418 eV Total energy + Delta-G solvation = -4735.803014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.81929 -48.35276 -48.27794 -42.58713 -41.16854 -40.00498 -36.58697 -34.80234 -34.45426 -33.78075 -31.34231 -31.08792 -30.14349 -26.88851 -25.84864 -25.08689 -23.34365 -22.15732 -21.96522 -21.50430 -20.22019 -19.38692 -19.31244 -18.77044 -18.44509 -18.22917 -17.78694 -16.84463 -16.44138 -16.28878 -16.05916 -15.59229 -15.33036 -15.27251 -15.16892 -14.95680 -14.77378 -14.70342 -14.50133 -14.47880 -14.42253 -14.35496 -14.13939 -13.70714 -13.65270 -13.50576 -13.07008 -12.57066 -11.99148 -11.86938 -11.64349 -11.44626 -11.20670 -11.07567 -10.99887 -10.68519 -10.23869 -9.95965 -9.31876 -8.57304 -6.75510 -0.56341 -0.09769 1.12805 1.20953 1.23372 1.29077 1.40302 1.67797 1.92813 2.04227 2.13854 2.18154 2.64271 2.92613 3.22759 3.31963 3.38155 3.43175 3.56661 3.79701 3.85686 3.96836 4.07024 4.19840 4.35366 4.50694 4.59513 4.74402 4.88574 4.93666 5.00866 5.05160 5.38398 5.45358 5.64961 5.85708 6.12356 6.40664 6.42761 6.66143 6.83519 6.97455 7.28173 8.55313 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.011932 B = 0.005546 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.073497 B = 5047.496550 C = 6281.848344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.068 3.932 3 Si 0.919 3.081 4 H -0.269 1.269 5 H -0.265 1.265 6 H -0.261 1.261 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.218 3.782 10 H 0.075 0.925 11 N -0.704 5.704 12 C 0.555 3.445 13 O -0.543 6.543 14 C -0.204 4.204 15 C -0.031 4.031 16 C -0.165 4.165 17 C 0.152 3.848 18 N -0.516 5.516 19 C 0.388 3.612 20 N -0.344 5.344 21 C 0.057 3.943 22 C -0.253 4.253 23 C 0.038 3.962 24 N -0.276 5.276 25 C 0.437 3.563 26 F -0.192 7.192 27 F -0.182 7.182 28 F -0.189 7.189 29 H 0.281 0.719 30 H 0.408 0.592 31 H 0.162 0.838 32 H 0.195 0.805 33 H 0.218 0.782 34 H 0.201 0.799 35 H 0.187 0.813 36 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.717 -0.710 13.227 19.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.743 3.257 4 H -0.194 1.194 5 H -0.189 1.189 6 H -0.186 1.186 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.113 3.887 10 H 0.093 0.907 11 N -0.356 5.356 12 C 0.342 3.658 13 O -0.420 6.420 14 C -0.212 4.212 15 C -0.057 4.057 16 C -0.185 4.185 17 C -0.007 4.007 18 N -0.229 5.229 19 C 0.161 3.839 20 N -0.123 5.123 21 C -0.083 4.083 22 C -0.280 4.280 23 C -0.152 4.152 24 N -0.093 5.093 25 C 0.382 3.618 26 F -0.174 7.174 27 F -0.163 7.163 28 F -0.170 7.170 29 H 0.091 0.909 30 H 0.245 0.755 31 H 0.179 0.821 32 H 0.212 0.788 33 H 0.234 0.766 34 H 0.218 0.782 35 H 0.204 0.796 36 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 13.630 -0.620 12.801 18.710 hybrid contribution -0.146 0.538 -0.673 0.874 sum 13.484 -0.082 12.128 18.136 Atomic orbital electron populations 1.69915 1.07490 1.29364 1.46261 1.25475 0.95211 1.01499 0.91714 0.86138 0.79607 0.80276 0.79719 1.19381 1.18931 1.18581 1.20656 0.86982 0.95280 1.54453 0.91696 1.19684 0.95886 0.91496 0.81643 0.90710 1.46896 1.17123 1.60794 1.10824 1.18360 0.81347 0.78332 0.87807 1.90733 1.53708 1.44303 1.53246 1.20645 0.95128 1.10177 0.95272 1.22125 0.99822 0.91827 0.91955 1.22608 0.97936 1.00603 0.97363 1.23644 0.89438 0.89479 0.98106 1.67128 1.40241 1.18317 0.97219 1.17734 0.85551 0.94436 0.86184 1.45824 1.05637 1.52172 1.08686 1.23308 0.82843 1.00632 1.01469 1.21965 1.01723 1.11562 0.92786 1.24587 0.90100 0.99050 1.01468 1.77875 1.24025 1.18961 0.88428 1.21589 0.75316 0.85997 0.78941 1.93058 1.90931 1.50406 1.82974 1.93203 1.30205 1.96504 1.96392 1.93085 1.87300 1.96659 1.39977 0.90905 0.75542 0.82092 0.78784 0.76560 0.78203 0.79592 0.78226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.12 13.96 21.45 0.30 -48.82 16 2 C 0.07 3.54 5.47 84.66 0.46 4.00 16 3 Si 0.92 41.57 27.14 68.60 1.86 43.43 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.26 -12.18 6.62 99.48 0.66 -11.52 16 7 C -0.54 -27.88 8.53 25.60 0.22 -27.67 16 8 H 0.06 3.71 8.00 -2.91 -0.02 3.68 16 9 C 0.22 10.37 1.59 44.25 0.07 10.44 16 10 H 0.08 3.80 4.78 -2.39 -0.01 3.79 16 11 N -0.70 -29.54 4.84 -449.22 -2.18 -31.72 16 12 C 0.56 23.22 6.13 86.71 0.53 23.75 16 13 O -0.54 -26.19 12.64 -3.99 -0.05 -26.24 16 14 C -0.20 -6.84 5.78 -19.90 -0.12 -6.96 16 15 C -0.03 -0.73 9.49 22.72 0.22 -0.52 16 16 C -0.17 -2.42 10.09 22.33 0.23 -2.19 16 17 C 0.15 2.35 11.17 84.73 0.95 3.30 16 18 N -0.52 -12.88 10.02 -191.97 -1.92 -14.80 16 19 C 0.39 12.66 7.38 133.26 0.98 13.65 16 20 N -0.34 -12.03 3.44 -191.54 -0.66 -12.69 16 21 C 0.06 1.56 11.21 83.37 0.93 2.49 16 22 C -0.25 -6.38 10.80 22.01 0.24 -6.14 16 23 C 0.04 1.20 12.02 85.28 1.02 2.22 16 24 N -0.28 -10.83 8.23 -56.96 -0.47 -11.30 16 25 C 0.44 20.50 2.83 71.98 0.20 20.71 16 26 F -0.19 -8.80 16.93 44.97 0.76 -8.03 16 27 F -0.18 -8.44 15.36 44.97 0.69 -7.75 16 28 F -0.19 -8.96 16.89 44.97 0.76 -8.20 16 29 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.41 15.30 8.08 -92.71 -0.75 14.55 16 31 H 0.16 3.39 7.92 -2.91 -0.02 3.37 16 32 H 0.20 1.06 8.06 -2.91 -0.02 1.03 16 33 H 0.22 1.18 8.06 -2.91 -0.02 1.15 16 34 H 0.20 4.09 8.06 -2.91 -0.02 4.06 16 35 H 0.19 3.14 8.06 -2.91 -0.02 3.11 16 36 H 0.20 5.30 8.06 -2.91 -0.02 5.27 16 Total: -1.00 -74.50 330.14 5.41 -69.08 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.38 Total: 19.98 kcal Atomic # 6 Polarization: 31.14 SS G_CDS: 5.94 Total: 37.08 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -4.93 Total: -119.34 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.05 Total: -26.24 kcal Atomic # 9 Polarization: -26.20 SS G_CDS: 2.21 Total: -23.99 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.86 Total: 43.43 kcal Total: -74.50 5.41 -69.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361766903.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.093 kcal (2) G-P(sol) polarization free energy of solvation -74.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds