Wall clock time and date at job start Sat Apr 11 2020 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86803 * 120.00029 * 2 1 4 4 H 1.48495 * 109.47283 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47393 * 120.00176 * 3 2 1 6 6 H 1.48504 * 109.46844 * 239.99817 * 3 2 1 7 7 C 1.40032 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00118 * 4.83311 * 7 2 1 9 9 C 1.41338 * 119.99986 * 184.82447 * 7 2 1 10 10 C 1.40609 * 119.78483 * 185.13148 * 9 7 2 11 11 C 1.38312 * 119.13053 * 179.97438 * 10 9 7 12 12 C 1.38682 * 118.67312 * 0.02562 * 11 10 9 13 13 C 1.39658 * 119.49368 * 359.97438 * 12 11 10 14 14 N 1.39185 * 119.57575 * 180.02562 * 13 12 11 15 15 C 1.34781 * 120.00070 * 339.00677 * 14 13 12 16 16 O 1.21568 * 119.99896 * 3.69927 * 15 14 13 17 17 C 1.47659 * 119.99958 * 183.70839 * 15 14 13 18 18 C 1.41517 * 126.52071 * 179.71454 * 17 15 14 19 19 C 1.35364 * 105.50710 * 179.84171 * 18 17 15 20 20 N 1.35042 * 107.22808 * 0.41066 * 19 18 17 21 21 C 1.46496 * 124.88225 * 179.68909 * 20 19 18 22 22 C 1.53007 * 109.46907 * 125.01940 * 21 20 19 23 23 F 1.39892 * 109.47088 * 60.00157 * 22 21 20 24 24 F 1.39900 * 109.46888 * 180.02562 * 22 21 20 25 25 F 1.39905 * 109.46919 * 299.99873 * 22 21 20 26 26 N 1.28469 * 110.23368 * 359.72645 * 20 19 18 27 27 N 1.31941 * 120.84638 * 359.73315 * 13 12 11 28 28 H 0.97000 * 119.99868 * 174.99382 * 1 2 3 29 29 H 1.08005 * 120.43675 * 359.97438 * 10 9 7 30 30 H 1.08003 * 120.66203 * 180.02562 * 11 10 9 31 31 H 1.08001 * 120.25526 * 180.02562 * 12 11 10 32 32 H 0.96995 * 120.00097 * 159.00766 * 14 13 12 33 33 H 1.08001 * 127.24591 * 359.97438 * 18 17 15 34 34 H 1.07998 * 126.38798 * 180.10602 * 19 18 17 35 35 H 1.09000 * 109.47460 * 245.01568 * 21 20 19 36 36 H 1.08997 * 109.47139 * 5.02094 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2765 2.7465 -0.0006 5 1 3.0952 1.6965 1.2125 6 1 3.0952 1.6963 -1.2125 7 6 2.0075 -1.2127 0.0005 8 1 1.4704 -2.1464 -0.0778 9 6 3.4172 -1.2148 0.1035 10 6 4.1236 -2.4257 -0.0050 11 6 5.5029 -2.4121 0.0973 12 6 6.1428 -1.1993 0.3046 13 6 5.3851 -0.0303 0.4038 14 7 6.0256 1.1879 0.6113 15 6 7.2699 1.2156 1.1285 16 8 7.8590 0.1757 1.3510 17 6 7.9176 2.5090 1.4251 18 6 9.2092 2.6984 1.9715 19 6 9.3713 4.0393 2.0609 20 7 8.2368 4.6107 1.6027 21 6 7.9941 6.0538 1.5340 22 6 7.6103 6.4389 0.1038 23 9 6.4494 5.7526 -0.2683 24 9 7.3791 7.8171 0.0381 25 9 8.6520 6.0992 -0.7661 26 7 7.4006 3.7068 1.2364 27 7 4.0705 -0.0650 0.2976 28 1 -0.4850 -0.8369 -0.0733 29 1 3.5961 -3.3544 -0.1660 30 1 6.0702 -3.3276 0.0173 31 1 7.2188 -1.1590 0.3879 32 1 5.5765 2.0170 0.3838 33 1 9.9175 1.9340 2.2552 34 1 10.2432 4.5558 2.4342 35 1 7.1825 6.3185 2.2117 36 1 8.8986 6.5885 1.8239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361939753.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:35 Heat of formation + Delta-G solvation = -65.824778 kcal Electronic energy + Delta-G solvation = -28866.487429 eV Core-core repulsion = 24130.916441 eV Total energy + Delta-G solvation = -4735.570988 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.56157 -48.13447 -47.95925 -43.01482 -39.96871 -38.04691 -34.61747 -34.59623 -33.46998 -31.19678 -31.04392 -30.05641 -29.03288 -25.60166 -24.89721 -23.39948 -21.93571 -21.80909 -21.39424 -19.69898 -19.18756 -18.99320 -18.49891 -18.38876 -17.78455 -16.81615 -16.46132 -15.96219 -15.22707 -14.99559 -14.93040 -14.84209 -14.53365 -14.45576 -14.27147 -14.13037 -14.10065 -14.04524 -13.71978 -13.46470 -13.33386 -12.82907 -12.76834 -12.54142 -12.19584 -11.85823 -11.25618 -11.17693 -10.80919 -10.29023 -9.98936 -9.67012 -9.64067 -9.46327 -9.31464 -9.13090 -8.53194 -7.70736 -7.45817 -7.18973 -4.75581 1.16990 1.60743 1.77034 2.16740 2.54894 2.67278 3.11689 3.21397 3.29775 3.50742 3.60390 3.63806 3.70794 4.01601 4.04491 4.27752 4.37764 4.42563 4.44451 4.67121 4.94795 5.32866 5.46473 5.54706 5.88247 6.04956 6.10763 6.23111 6.46714 6.53668 6.57636 7.13527 7.19402 7.41083 7.47363 7.61058 7.68082 7.78228 8.13978 8.28620 8.43971 8.67136 9.42995 10.02793 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.012839 B = 0.003714 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.399156 B = 7538.171918 C = 9298.964990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.045 3.955 3 Si 1.150 2.850 4 H -0.332 1.332 5 H -0.278 1.278 6 H -0.293 1.293 7 C -0.476 4.476 8 H 0.084 0.916 9 C 0.273 3.727 10 C -0.274 4.274 11 C -0.035 4.035 12 C -0.312 4.312 13 C 0.385 3.615 14 N -0.639 5.639 15 C 0.606 3.394 16 O -0.503 6.503 17 C 0.007 3.993 18 C -0.167 4.167 19 C -0.009 4.009 20 N -0.298 5.298 21 C 0.083 3.917 22 C 0.445 3.555 23 F -0.158 7.158 24 F -0.174 7.174 25 F -0.177 7.177 26 N -0.252 5.252 27 N -0.597 5.597 28 H 0.283 0.717 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.146 0.854 32 H 0.413 0.587 33 H 0.170 0.830 34 H 0.189 0.811 35 H 0.141 0.859 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.639 15.839 4.167 24.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.176 4.176 3 Si 0.985 3.015 4 H -0.266 1.266 5 H -0.206 1.206 6 H -0.221 1.221 7 C -0.508 4.508 8 H 0.102 0.898 9 C 0.149 3.851 10 C -0.297 4.297 11 C -0.060 4.060 12 C -0.337 4.337 13 C 0.154 3.846 14 N -0.283 5.283 15 C 0.390 3.610 16 O -0.376 6.376 17 C -0.156 4.156 18 C -0.195 4.195 19 C -0.150 4.150 20 N -0.087 5.087 21 C -0.040 4.040 22 C 0.390 3.610 23 F -0.139 7.139 24 F -0.155 7.155 25 F -0.158 7.158 26 N -0.086 5.086 27 N -0.322 5.322 28 H 0.094 0.906 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.163 0.837 32 H 0.250 0.750 33 H 0.188 0.812 34 H 0.206 0.794 35 H 0.159 0.841 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 17.315 18.038 4.043 25.328 hybrid contribution 0.866 -2.415 -0.142 2.569 sum 18.180 15.623 3.901 24.286 Atomic orbital electron populations 1.70647 1.08175 1.32777 1.31201 1.27754 0.95300 1.06138 0.88435 0.81905 0.70806 0.69617 0.79123 1.26563 1.20629 1.22149 1.20730 0.90355 0.96350 1.43394 0.89811 1.18278 0.93447 0.85882 0.87494 1.21624 0.94032 0.98348 1.15673 1.20951 0.94137 0.96510 0.94372 1.21732 1.01333 0.91424 1.19181 1.18069 0.88683 0.84037 0.93788 1.43067 1.15405 1.09224 1.60559 1.16734 0.80748 0.86261 0.77269 1.90697 1.63655 1.31389 1.51815 1.22021 0.95746 0.91193 1.06605 1.21848 0.97071 0.95385 1.05158 1.22915 0.92436 0.93936 1.05694 1.44946 1.11655 1.05231 1.46826 1.23086 1.08854 0.78061 0.93997 1.20443 0.76145 0.75187 0.89271 1.93341 1.48894 1.79006 1.92654 1.93240 1.94604 1.30862 1.96822 1.93248 1.57982 1.92011 1.72563 1.73735 1.19086 0.97351 1.18446 1.65997 1.06703 1.29787 1.29733 0.90598 0.87629 0.87480 0.83693 0.75037 0.81211 0.79430 0.84142 0.83329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.37 13.65 55.55 0.76 -21.61 16 2 C 0.04 1.25 5.52 -17.35 -0.10 1.15 16 3 Si 1.15 29.01 25.61 -169.99 -4.35 24.65 16 4 H -0.33 -8.25 7.11 56.52 0.40 -7.85 16 5 H -0.28 -6.98 6.61 56.52 0.37 -6.60 16 6 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 7 C -0.48 -13.25 9.57 -37.73 -0.36 -13.61 16 8 H 0.08 2.31 8.05 -52.49 -0.42 1.89 16 9 C 0.27 7.36 6.40 -85.00 -0.54 6.81 16 10 C -0.27 -6.66 9.83 -38.66 -0.38 -7.04 16 11 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 12 C -0.31 -7.20 8.89 -38.89 -0.35 -7.54 16 13 C 0.38 9.24 7.51 -155.03 -1.16 8.08 16 14 N -0.64 -13.17 5.41 -12.32 -0.07 -13.24 16 15 C 0.61 11.20 7.72 -12.41 -0.10 11.10 16 16 O -0.50 -10.14 13.58 5.31 0.07 -10.07 16 17 C 0.01 0.10 7.13 -82.78 -0.59 -0.49 16 18 C -0.17 -1.81 10.81 -39.36 -0.43 -2.24 16 19 C -0.01 -0.07 11.40 -17.16 -0.20 -0.27 16 20 N -0.30 -2.69 3.33 -61.33 -0.20 -2.89 16 21 C 0.08 0.40 6.41 -4.04 -0.03 0.37 16 22 C 0.44 3.56 3.26 37.16 0.12 3.68 16 23 F -0.16 -1.85 16.21 2.25 0.04 -1.81 16 24 F -0.17 -1.27 17.32 2.25 0.04 -1.24 16 25 F -0.18 -1.68 17.24 2.25 0.04 -1.64 16 26 N -0.25 -3.39 10.48 33.41 0.35 -3.04 16 27 N -0.60 -15.71 4.54 -10.27 -0.05 -15.76 16 28 H 0.28 7.48 8.72 -40.82 -0.36 7.13 16 29 H 0.11 2.37 8.06 -52.48 -0.42 1.95 16 30 H 0.11 2.01 8.06 -52.48 -0.42 1.59 16 31 H 0.15 3.23 5.17 -52.92 -0.27 2.96 16 32 H 0.41 8.11 8.55 -40.82 -0.35 7.76 16 33 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.19 0.48 8.06 -52.49 -0.42 0.06 16 35 H 0.14 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.15 0.03 8.04 -51.93 -0.42 -0.39 16 LS Contribution 331.68 15.07 5.00 5.00 Total: -1.00 -34.48 331.68 -5.64 -40.12 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -2.76 Total: 2.70 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -4.50 Total: -1.17 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.79 Total: -56.54 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.07 Total: -10.07 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.11 Total: -4.69 kcal Atomic # 14 Polarization: 29.01 SS G_CDS: -4.35 Total: 24.65 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.48 -5.64 -40.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361939753.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.707 kcal (2) G-P(sol) polarization free energy of solvation -34.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds