Wall clock time and date at job start Sat Apr 11 2020 05:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86803 * 120.00029 * 2 1 4 4 H 1.48495 * 109.47283 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47393 * 120.00176 * 3 2 1 6 6 H 1.48504 * 109.46844 * 239.99817 * 3 2 1 7 7 C 1.40032 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00118 * 4.83311 * 7 2 1 9 9 C 1.41338 * 119.99986 * 184.82447 * 7 2 1 10 10 C 1.40609 * 119.78483 * 185.13148 * 9 7 2 11 11 C 1.38312 * 119.13053 * 179.97438 * 10 9 7 12 12 C 1.38682 * 118.67312 * 0.02562 * 11 10 9 13 13 C 1.39658 * 119.49368 * 359.97438 * 12 11 10 14 14 N 1.39185 * 119.57575 * 180.02562 * 13 12 11 15 15 C 1.34781 * 120.00070 * 339.00677 * 14 13 12 16 16 O 1.21568 * 119.99896 * 3.69927 * 15 14 13 17 17 C 1.47659 * 119.99958 * 183.70839 * 15 14 13 18 18 C 1.41517 * 126.52071 * 179.71454 * 17 15 14 19 19 C 1.35364 * 105.50710 * 179.84171 * 18 17 15 20 20 N 1.35042 * 107.22808 * 0.41066 * 19 18 17 21 21 C 1.46496 * 124.88225 * 179.68909 * 20 19 18 22 22 C 1.53007 * 109.46907 * 125.01940 * 21 20 19 23 23 F 1.39892 * 109.47088 * 60.00157 * 22 21 20 24 24 F 1.39900 * 109.46888 * 180.02562 * 22 21 20 25 25 F 1.39905 * 109.46919 * 299.99873 * 22 21 20 26 26 N 1.28469 * 110.23368 * 359.72645 * 20 19 18 27 27 N 1.31941 * 120.84638 * 359.73315 * 13 12 11 28 28 H 0.97000 * 119.99868 * 174.99382 * 1 2 3 29 29 H 1.08005 * 120.43675 * 359.97438 * 10 9 7 30 30 H 1.08003 * 120.66203 * 180.02562 * 11 10 9 31 31 H 1.08001 * 120.25526 * 180.02562 * 12 11 10 32 32 H 0.96995 * 120.00097 * 159.00766 * 14 13 12 33 33 H 1.08001 * 127.24591 * 359.97438 * 18 17 15 34 34 H 1.07998 * 126.38798 * 180.10602 * 19 18 17 35 35 H 1.09000 * 109.47460 * 245.01568 * 21 20 19 36 36 H 1.08997 * 109.47139 * 5.02094 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2765 2.7465 -0.0006 5 1 3.0952 1.6965 1.2125 6 1 3.0952 1.6963 -1.2125 7 6 2.0075 -1.2127 0.0005 8 1 1.4704 -2.1464 -0.0778 9 6 3.4172 -1.2148 0.1035 10 6 4.1236 -2.4257 -0.0050 11 6 5.5029 -2.4121 0.0973 12 6 6.1428 -1.1993 0.3046 13 6 5.3851 -0.0303 0.4038 14 7 6.0256 1.1879 0.6113 15 6 7.2699 1.2156 1.1285 16 8 7.8590 0.1757 1.3510 17 6 7.9176 2.5090 1.4251 18 6 9.2092 2.6984 1.9715 19 6 9.3713 4.0393 2.0609 20 7 8.2368 4.6107 1.6027 21 6 7.9941 6.0538 1.5340 22 6 7.6103 6.4389 0.1038 23 9 6.4494 5.7526 -0.2683 24 9 7.3791 7.8171 0.0381 25 9 8.6520 6.0992 -0.7661 26 7 7.4006 3.7068 1.2364 27 7 4.0705 -0.0650 0.2976 28 1 -0.4850 -0.8369 -0.0733 29 1 3.5961 -3.3544 -0.1660 30 1 6.0702 -3.3276 0.0173 31 1 7.2188 -1.1590 0.3879 32 1 5.5765 2.0170 0.3838 33 1 9.9175 1.9340 2.2552 34 1 10.2432 4.5558 2.4342 35 1 7.1825 6.3185 2.2117 36 1 8.8986 6.5885 1.8239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361939753.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:34 Heat of formation + Delta-G solvation = -88.765904 kcal Electronic energy + Delta-G solvation = -28867.482231 eV Core-core repulsion = 24130.916441 eV Total energy + Delta-G solvation = -4736.565790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.20293 -48.74606 -48.68345 -43.80976 -41.60423 -39.81446 -36.34261 -35.49262 -35.18599 -33.02267 -32.04276 -31.45342 -30.12353 -27.41031 -26.09547 -24.37103 -23.65351 -22.86336 -22.66443 -21.18662 -20.28184 -19.82967 -19.65976 -19.21534 -19.01213 -18.12040 -17.61316 -16.99810 -16.88699 -16.63324 -15.94130 -15.76231 -15.61013 -15.53417 -15.46511 -15.10779 -14.90635 -14.83462 -14.80702 -14.74075 -14.66734 -14.35765 -14.09931 -13.77268 -13.74849 -13.17524 -13.00830 -12.79894 -12.26970 -12.02227 -11.79028 -11.68842 -11.19331 -10.94778 -10.48543 -10.44286 -10.20437 -9.73496 -9.38907 -9.20741 -6.84341 0.07764 0.65863 0.73980 1.03391 1.10150 1.53037 1.61981 1.65609 1.77884 2.01520 2.18707 2.41404 2.57851 2.64640 2.84711 3.01389 3.28209 3.52391 3.71055 3.87606 4.02600 4.05949 4.12826 4.37610 4.61080 4.64919 4.66436 4.68410 4.79074 5.18656 5.32403 5.36700 5.40057 5.65714 5.70916 5.77570 5.89684 6.19100 6.37603 6.58421 6.67737 6.91095 7.46814 7.93300 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.012839 B = 0.003714 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.399156 B = 7538.171918 C = 9298.964990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.020 3.980 3 Si 1.181 2.819 4 H -0.328 1.328 5 H -0.281 1.281 6 H -0.297 1.297 7 C -0.507 4.507 8 H 0.073 0.927 9 C 0.256 3.744 10 C -0.286 4.286 11 C -0.026 4.026 12 C -0.307 4.307 13 C 0.370 3.630 14 N -0.645 5.645 15 C 0.606 3.394 16 O -0.526 6.526 17 C -0.030 4.030 18 C -0.186 4.186 19 C 0.027 3.973 20 N -0.290 5.290 21 C 0.082 3.918 22 C 0.438 3.562 23 F -0.187 7.187 24 F -0.170 7.170 25 F -0.188 7.188 26 N -0.281 5.281 27 N -0.614 5.614 28 H 0.283 0.717 29 H 0.119 0.881 30 H 0.150 0.850 31 H 0.157 0.843 32 H 0.415 0.585 33 H 0.178 0.822 34 H 0.248 0.752 35 H 0.162 0.838 36 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.221 17.797 5.410 28.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.198 4.198 3 Si 1.015 2.985 4 H -0.261 1.261 5 H -0.209 1.209 6 H -0.226 1.226 7 C -0.540 4.540 8 H 0.092 0.908 9 C 0.131 3.869 10 C -0.309 4.309 11 C -0.050 4.050 12 C -0.331 4.331 13 C 0.140 3.860 14 N -0.289 5.289 15 C 0.394 3.606 16 O -0.400 6.400 17 C -0.189 4.189 18 C -0.214 4.214 19 C -0.113 4.113 20 N -0.079 5.079 21 C -0.039 4.039 22 C 0.383 3.617 23 F -0.168 7.168 24 F -0.152 7.152 25 F -0.170 7.170 26 N -0.117 5.117 27 N -0.340 5.340 28 H 0.094 0.906 29 H 0.137 0.863 30 H 0.167 0.833 31 H 0.174 0.826 32 H 0.252 0.748 33 H 0.196 0.804 34 H 0.265 0.735 35 H 0.180 0.820 36 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 20.912 20.010 5.289 29.423 hybrid contribution 0.026 -2.930 -0.513 2.975 sum 20.938 17.080 4.776 27.440 Atomic orbital electron populations 1.70654 1.08339 1.32813 1.33319 1.28352 0.95600 1.07599 0.88205 0.81471 0.70047 0.68277 0.78698 1.26118 1.20882 1.22580 1.20736 0.91195 0.96080 1.45982 0.90839 1.18502 0.93491 0.87240 0.87650 1.21818 0.95075 0.98011 1.15949 1.21393 0.93536 0.97888 0.92180 1.22102 1.01991 0.91527 1.17464 1.18458 0.88280 0.85875 0.93382 1.43198 1.16260 1.08140 1.61310 1.17311 0.79648 0.87869 0.75796 1.90634 1.63891 1.32852 1.52609 1.21600 0.97504 0.90018 1.09828 1.22113 0.95779 0.97550 1.05917 1.23733 0.92688 0.92681 1.02241 1.45366 1.11386 1.06255 1.44917 1.23670 1.12671 0.75824 0.91694 1.20974 0.74998 0.75081 0.90683 1.93287 1.50682 1.79723 1.93139 1.93245 1.94540 1.30499 1.96896 1.93224 1.58239 1.92128 1.73368 1.73663 1.20776 0.97701 1.19577 1.65944 1.07950 1.29929 1.30196 0.90642 0.86256 0.83255 0.82558 0.74800 0.80425 0.73545 0.81991 0.77534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.31 13.65 21.84 0.30 -47.02 16 2 C 0.02 1.13 5.52 85.29 0.47 1.60 16 3 Si 1.18 60.46 25.61 68.60 1.76 62.22 16 4 H -0.33 -16.28 7.11 99.48 0.71 -15.57 16 5 H -0.28 -14.29 6.61 99.48 0.66 -13.64 16 6 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 7 C -0.51 -29.16 9.57 23.47 0.22 -28.94 16 8 H 0.07 4.23 8.05 -2.91 -0.02 4.21 16 9 C 0.26 14.03 6.40 40.21 0.26 14.29 16 10 C -0.29 -13.76 9.83 22.87 0.22 -13.54 16 11 C -0.03 -1.10 10.15 22.39 0.23 -0.88 16 12 C -0.31 -13.83 8.89 22.72 0.20 -13.63 16 13 C 0.37 17.85 7.51 133.26 1.00 18.85 16 14 N -0.64 -26.84 5.41 -311.14 -1.68 -28.53 16 15 C 0.61 22.37 7.72 86.73 0.67 23.04 16 16 O -0.53 -20.99 13.58 -3.93 -0.05 -21.04 16 17 C -0.03 -0.84 7.13 42.44 0.30 -0.54 16 18 C -0.19 -3.52 10.81 22.41 0.24 -3.27 16 19 C 0.03 0.27 11.40 83.54 0.95 1.22 16 20 N -0.29 -4.12 3.33 -347.95 -1.16 -5.28 16 21 C 0.08 0.41 6.41 86.38 0.55 0.97 16 22 C 0.44 5.95 3.26 71.98 0.23 6.18 16 23 F -0.19 -4.26 16.21 44.97 0.73 -3.53 16 24 F -0.17 -2.09 17.32 44.97 0.78 -1.31 16 25 F -0.19 -3.17 17.24 44.97 0.78 -2.39 16 26 N -0.28 -7.10 10.48 -48.20 -0.51 -7.61 16 27 N -0.61 -32.76 4.54 -186.40 -0.85 -33.60 16 28 H 0.28 15.53 8.72 -92.71 -0.81 14.72 16 29 H 0.12 5.30 8.06 -2.91 -0.02 5.28 16 30 H 0.15 5.07 8.06 -2.91 -0.02 5.04 16 31 H 0.16 6.76 5.17 -9.77 -0.05 6.71 16 32 H 0.42 16.66 8.55 -92.71 -0.79 15.86 16 33 H 0.18 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.25 -0.70 8.06 -2.91 -0.02 -0.72 16 35 H 0.16 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.21 -1.39 8.04 -2.39 -0.02 -1.41 16 Total: -1.00 -79.55 331.68 5.92 -73.64 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.26 Total: 9.11 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 5.56 Total: 5.35 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -3.89 Total: -122.04 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.05 Total: -21.04 kcal Atomic # 9 Polarization: -9.52 SS G_CDS: 2.28 Total: -7.24 kcal Atomic # 14 Polarization: 60.46 SS G_CDS: 1.76 Total: 62.22 kcal Total: -79.55 5.92 -73.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361939753.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.130 kcal (2) G-P(sol) polarization free energy of solvation -79.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds