Wall clock time and date at job start Sat Apr 11 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86794 * 119.99864 * 2 1 4 4 H 1.48505 * 109.47254 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47173 * 299.99653 * 3 2 1 6 6 H 1.48504 * 109.47459 * 59.99893 * 3 2 1 7 7 C 1.38982 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00037 * 180.02562 * 7 2 1 9 9 N 1.37326 * 120.00502 * 0.02562 * 7 2 1 10 10 C 1.36489 * 126.07373 * 179.97438 * 9 7 2 11 11 C 1.35682 * 107.50787 * 180.02562 * 10 9 7 12 12 N 1.40591 * 126.08175 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00117 * 179.97438 * 12 11 10 14 14 O 1.21300 * 119.99911 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99790 * 179.97438 * 13 12 11 16 16 C 1.50706 * 109.46605 * 180.02562 * 15 13 12 17 17 C 1.38220 * 119.61574 * 125.26096 * 16 15 13 18 18 C 1.38631 * 119.16036 * 180.22824 * 17 16 15 19 19 C 1.38675 * 118.41910 * 359.51942 * 18 17 16 20 20 C 1.38184 * 119.16116 * 0.25514 * 19 18 17 21 21 C 1.50703 * 119.61425 * 180.02562 * 20 19 18 22 22 F 1.39892 * 109.47354 * 89.99846 * 21 20 19 23 23 F 1.39902 * 109.46892 * 210.00102 * 21 20 19 24 24 F 1.39897 * 109.46801 * 329.99514 * 21 20 19 25 25 N 1.31852 * 119.61731 * 304.99883 * 16 15 13 26 26 C 1.40645 * 107.83343 * 0.26188 * 11 10 9 27 27 N 1.30902 * 108.39181 * 359.55398 * 26 11 10 28 28 H 0.96998 * 119.99879 * 0.02562 * 1 2 3 29 29 H 1.08002 * 126.24370 * 0.04715 * 10 9 7 30 30 H 0.96999 * 119.99745 * 0.02562 * 12 11 10 31 31 H 1.08998 * 109.46607 * 60.00932 * 15 13 12 32 32 H 1.08993 * 109.47237 * 300.00736 * 15 13 12 33 33 H 1.07999 * 120.42427 * 0.02562 * 17 16 15 34 34 H 1.08002 * 120.79356 * 179.80055 * 18 17 16 35 35 H 1.07998 * 120.41921 * 180.27486 * 19 18 17 36 36 H 1.08002 * 125.80332 * 179.70027 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.7070 1.3464 0.0006 5 1 1.8882 2.3964 -1.2125 6 1 1.8882 2.3965 1.2125 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2037 0.0010 9 7 1.3213 -2.3930 0.0005 10 6 1.8750 -3.6405 0.0005 11 6 0.8578 -4.5385 0.0000 12 7 0.9890 -5.9383 0.0003 13 6 -0.1101 -6.7182 0.0001 14 8 -1.2126 -6.2124 -0.0007 15 6 0.0306 -8.2186 -0.0001 16 6 -1.3371 -8.8514 -0.0009 17 6 -1.6654 -9.7676 -0.9824 18 6 -2.9279 -10.3403 -0.9768 19 6 -3.8135 -9.9759 0.0261 20 6 -3.4128 -9.0566 0.9769 21 6 -4.3668 -8.6537 2.0717 22 9 -4.2079 -9.5094 3.1670 23 9 -4.0972 -7.3383 2.4645 24 9 -5.6811 -8.7394 1.5999 25 7 -2.2050 -8.5285 0.9378 26 6 -0.3512 -3.8198 -0.0065 27 7 -0.0715 -2.5411 0.0000 28 1 -0.4850 0.8400 -0.0004 29 1 2.9301 -3.8708 0.0013 30 1 1.8707 -6.3427 0.0013 31 1 0.5760 -8.5325 0.8899 32 1 0.5762 -8.5322 -0.8900 33 1 -0.9486 -10.0315 -1.7459 34 1 -3.2134 -11.0566 -1.7330 35 1 -4.8037 -10.4054 0.0639 36 1 -1.3418 -4.2500 -0.0131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362163414.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:40 Heat of formation + Delta-G solvation = -57.442726 kcal Electronic energy + Delta-G solvation = -28275.330600 eV Core-core repulsion = 23540.123084 eV Total energy + Delta-G solvation = -4735.207515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.19116 -47.77337 -47.57089 -40.80515 -39.75227 -38.41468 -34.20428 -33.54547 -33.09176 -33.01211 -30.25846 -29.33429 -27.47108 -26.57432 -24.80342 -23.18929 -22.67519 -21.00432 -20.27479 -19.35509 -18.67048 -18.57844 -18.35552 -17.50540 -16.83739 -16.44457 -16.18190 -15.45261 -15.36908 -14.90271 -14.68330 -14.56352 -14.42694 -14.14135 -14.09774 -13.89295 -13.78326 -13.74063 -13.33227 -13.21753 -13.07975 -12.90792 -12.79075 -12.15239 -11.96903 -11.64698 -11.37486 -11.24601 -10.89909 -10.48777 -10.28820 -10.10284 -9.84240 -9.54482 -9.13157 -9.07955 -8.75271 -8.01084 -6.65189 -6.51967 -4.18864 0.46185 0.87944 2.37034 2.87121 3.06229 3.06911 3.12987 3.15078 3.45258 3.64855 3.71555 3.76372 3.91071 4.20498 4.32992 4.42734 4.48521 4.61320 4.69961 4.79980 4.87298 5.04184 5.05787 5.20433 5.27503 5.45541 5.61040 5.70009 6.13872 6.27954 6.50756 6.94332 7.00710 7.17583 7.29072 7.51396 7.90301 8.22792 8.33311 8.68275 8.91553 9.42539 9.72123 10.44125 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.018687 B = 0.002492 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.969138 B =11234.116067 C =12217.993185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.045 3.955 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.323 4.323 8 H 0.116 0.884 9 N -0.144 5.144 10 C -0.085 4.085 11 C -0.058 4.058 12 N -0.626 5.626 13 C 0.502 3.498 14 O -0.517 6.517 15 C -0.091 4.091 16 C 0.156 3.844 17 C -0.136 4.136 18 C -0.074 4.074 19 C -0.131 4.131 20 C 0.044 3.956 21 C 0.521 3.479 22 F -0.175 7.175 23 F -0.156 7.156 24 F -0.174 7.174 25 N -0.411 5.411 26 C -0.032 4.032 27 N -0.260 5.260 28 H 0.274 0.726 29 H 0.145 0.855 30 H 0.396 0.604 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 -22.308 -1.473 22.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.088 4.912 10 C -0.236 4.236 11 C -0.163 4.163 12 N -0.269 5.269 13 C 0.286 3.714 14 O -0.392 6.392 15 C -0.131 4.131 16 C 0.017 3.983 17 C -0.156 4.156 18 C -0.100 4.100 19 C -0.151 4.151 20 C -0.096 4.096 21 C 0.466 3.534 22 F -0.156 7.156 23 F -0.137 7.137 24 F -0.156 7.156 25 N -0.119 5.119 26 C -0.208 4.208 27 N -0.092 5.092 28 H 0.084 0.916 29 H 0.162 0.838 30 H 0.229 0.771 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -3.348 -19.972 -0.791 20.266 hybrid contribution 0.883 -0.882 -0.452 1.327 sum -2.465 -20.854 -1.243 21.036 Atomic orbital electron populations 1.70234 1.06110 1.27806 1.35508 1.25640 0.95696 1.00248 0.95562 0.85773 0.79597 0.80354 0.78448 1.18726 1.19954 1.19938 1.19896 0.91629 0.80570 1.53459 0.86636 1.44554 1.04051 1.03296 1.39304 1.21248 0.96780 0.85421 1.20106 1.17251 0.94231 0.81280 1.23565 1.42446 1.08006 1.04530 1.71968 1.19889 0.84815 0.87691 0.79003 1.90654 1.25626 1.74441 1.48454 1.20621 0.93080 0.93775 1.05654 1.20589 0.94525 0.92924 0.90273 1.22179 0.97702 0.96838 0.98890 1.21552 0.92732 0.98393 0.97286 1.21828 1.01569 0.97103 0.94568 1.20865 0.93862 0.98352 0.96493 1.17899 0.78782 0.75780 0.80928 1.93216 1.95440 1.70667 1.56304 1.93304 1.93456 1.35522 1.91412 1.93191 1.37946 1.96050 1.88385 1.66931 1.00796 1.19950 1.24270 1.24105 0.98064 0.90722 1.07875 1.78256 0.90107 1.15137 1.25660 0.91558 0.83764 0.77113 0.86851 0.87086 0.83555 0.83467 0.83588 0.80817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.92 11.81 55.49 0.66 -21.27 16 2 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 3 Si 0.93 19.19 29.55 -169.99 -5.02 14.16 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.32 -8.67 10.25 -14.81 -0.15 -8.82 16 8 H 0.12 2.76 7.83 -52.49 -0.41 2.35 16 9 N -0.14 -4.02 3.74 -11.41 -0.04 -4.06 16 10 C -0.08 -2.00 11.49 -16.39 -0.19 -2.19 16 11 C -0.06 -1.34 6.90 -83.84 -0.58 -1.92 16 12 N -0.63 -10.76 5.47 -10.00 -0.05 -10.82 16 13 C 0.50 8.47 7.73 -10.98 -0.08 8.39 16 14 O -0.52 -11.24 12.49 5.54 0.07 -11.17 16 15 C -0.09 -0.96 6.10 -29.03 -0.18 -1.14 16 16 C 0.16 1.89 5.76 -82.59 -0.48 1.42 16 17 C -0.14 -1.16 9.71 -39.44 -0.38 -1.54 16 18 C -0.07 -0.56 10.18 -39.28 -0.40 -0.96 16 19 C -0.13 -1.24 9.44 -39.44 -0.37 -1.61 16 20 C 0.04 0.59 6.29 -82.59 -0.52 0.07 16 21 C 0.52 7.06 3.43 36.01 0.12 7.18 16 22 F -0.17 -2.24 17.30 2.25 0.04 -2.20 16 23 F -0.16 -2.61 17.04 2.25 0.04 -2.57 16 24 F -0.17 -2.12 16.44 2.25 0.04 -2.08 16 25 N -0.41 -6.22 8.83 -5.74 -0.05 -6.27 16 26 C -0.03 -0.87 10.85 -17.04 -0.18 -1.05 16 27 N -0.26 -7.75 10.40 30.80 0.32 -7.43 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.14 2.82 8.06 -52.49 -0.42 2.40 16 30 H 0.40 4.96 8.83 -40.82 -0.36 4.60 16 31 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.11 0.73 7.87 -51.93 -0.41 0.32 16 33 H 0.15 0.73 7.95 -52.49 -0.42 0.31 16 34 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.15 1.01 7.60 -52.49 -0.40 0.61 16 36 H 0.18 4.75 5.92 -52.49 -0.31 4.44 16 LS Contribution 336.58 15.07 5.07 5.07 Total: -1.00 -37.15 336.58 -5.14 -42.29 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -2.71 Total: 7.43 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -3.49 Total: -1.09 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.83 Total: -49.84 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.07 Total: -11.17 kcal Atomic # 9 Polarization: -6.97 SS G_CDS: 0.11 Total: -6.86 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.15 -5.14 -42.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362163414.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.151 kcal (2) G-P(sol) polarization free energy of solvation -37.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds