Wall clock time and date at job start Sat Apr 11 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86794 * 119.99864 * 2 1 4 4 H 1.48505 * 109.47254 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47173 * 299.99653 * 3 2 1 6 6 H 1.48504 * 109.47459 * 59.99893 * 3 2 1 7 7 C 1.38982 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00037 * 180.02562 * 7 2 1 9 9 N 1.37326 * 120.00502 * 0.02562 * 7 2 1 10 10 C 1.36489 * 126.07373 * 179.97438 * 9 7 2 11 11 C 1.35682 * 107.50787 * 180.02562 * 10 9 7 12 12 N 1.40591 * 126.08175 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00117 * 179.97438 * 12 11 10 14 14 O 1.21300 * 119.99911 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99790 * 179.97438 * 13 12 11 16 16 C 1.50706 * 109.46605 * 180.02562 * 15 13 12 17 17 C 1.38220 * 119.61574 * 125.26096 * 16 15 13 18 18 C 1.38631 * 119.16036 * 180.22824 * 17 16 15 19 19 C 1.38675 * 118.41910 * 359.51942 * 18 17 16 20 20 C 1.38184 * 119.16116 * 0.25514 * 19 18 17 21 21 C 1.50703 * 119.61425 * 180.02562 * 20 19 18 22 22 F 1.39892 * 109.47354 * 89.99846 * 21 20 19 23 23 F 1.39902 * 109.46892 * 210.00102 * 21 20 19 24 24 F 1.39897 * 109.46801 * 329.99514 * 21 20 19 25 25 N 1.31852 * 119.61731 * 304.99883 * 16 15 13 26 26 C 1.40645 * 107.83343 * 0.26188 * 11 10 9 27 27 N 1.30902 * 108.39181 * 359.55398 * 26 11 10 28 28 H 0.96998 * 119.99879 * 0.02562 * 1 2 3 29 29 H 1.08002 * 126.24370 * 0.04715 * 10 9 7 30 30 H 0.96999 * 119.99745 * 0.02562 * 12 11 10 31 31 H 1.08998 * 109.46607 * 60.00932 * 15 13 12 32 32 H 1.08993 * 109.47237 * 300.00736 * 15 13 12 33 33 H 1.07999 * 120.42427 * 0.02562 * 17 16 15 34 34 H 1.08002 * 120.79356 * 179.80055 * 18 17 16 35 35 H 1.07998 * 120.41921 * 180.27486 * 19 18 17 36 36 H 1.08002 * 125.80332 * 179.70027 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.7070 1.3464 0.0006 5 1 1.8882 2.3964 -1.2125 6 1 1.8882 2.3965 1.2125 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2037 0.0010 9 7 1.3213 -2.3930 0.0005 10 6 1.8750 -3.6405 0.0005 11 6 0.8578 -4.5385 0.0000 12 7 0.9890 -5.9383 0.0003 13 6 -0.1101 -6.7182 0.0001 14 8 -1.2126 -6.2124 -0.0007 15 6 0.0306 -8.2186 -0.0001 16 6 -1.3371 -8.8514 -0.0009 17 6 -1.6654 -9.7676 -0.9824 18 6 -2.9279 -10.3403 -0.9768 19 6 -3.8135 -9.9759 0.0261 20 6 -3.4128 -9.0566 0.9769 21 6 -4.3668 -8.6537 2.0717 22 9 -4.2079 -9.5094 3.1670 23 9 -4.0972 -7.3383 2.4645 24 9 -5.6811 -8.7394 1.5999 25 7 -2.2050 -8.5285 0.9378 26 6 -0.3512 -3.8198 -0.0065 27 7 -0.0715 -2.5411 0.0000 28 1 -0.4850 0.8400 -0.0004 29 1 2.9301 -3.8708 0.0013 30 1 1.8707 -6.3427 0.0013 31 1 0.5760 -8.5325 0.8899 32 1 0.5762 -8.5322 -0.8900 33 1 -0.9486 -10.0315 -1.7459 34 1 -3.2134 -11.0566 -1.7330 35 1 -4.8037 -10.4054 0.0639 36 1 -1.3418 -4.2500 -0.0131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362163414.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:40 Heat of formation + Delta-G solvation = -84.445920 kcal Electronic energy + Delta-G solvation = -28276.501546 eV Core-core repulsion = 23540.123084 eV Total energy + Delta-G solvation = -4736.378462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.25926 -48.79573 -48.72922 -41.80351 -41.38354 -39.91942 -35.88267 -34.92102 -34.40122 -33.74139 -32.23575 -30.54924 -29.09051 -27.51210 -26.66447 -24.09666 -23.60170 -22.81287 -21.77251 -21.12906 -19.66029 -19.62871 -19.39801 -19.27830 -17.98589 -17.41111 -17.25804 -17.04820 -16.90260 -16.16161 -15.83622 -15.69349 -15.53121 -15.33470 -15.25885 -15.17926 -14.98308 -14.89267 -14.89045 -14.78170 -14.28254 -13.99801 -13.69803 -13.47561 -13.26535 -13.11553 -12.88113 -12.83289 -12.74637 -12.02416 -11.78621 -10.99745 -10.98624 -10.81508 -10.73205 -10.53405 -10.20180 -10.08180 -8.47521 -8.45694 -6.22648 -0.28434 0.18951 1.25072 1.39827 1.41711 1.59140 1.59333 1.91410 2.06543 2.26374 2.46077 2.55945 2.60171 2.84594 2.98101 3.10526 3.32005 3.34821 3.78585 3.93167 4.02990 4.08675 4.28515 4.41933 4.47908 4.58309 4.64317 4.72437 4.98547 5.02065 5.04587 5.13343 5.32183 5.51947 5.55797 5.98350 6.35574 6.73585 6.76371 6.86978 7.47913 7.55311 7.72555 8.54070 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.018687 B = 0.002492 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.969138 B =11234.116067 C =12217.993185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C -0.010 4.010 3 Si 1.020 2.980 4 H -0.238 1.238 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.353 4.353 8 H 0.142 0.858 9 N -0.171 5.171 10 C -0.081 4.081 11 C -0.039 4.039 12 N -0.618 5.618 13 C 0.495 3.505 14 O -0.569 6.569 15 C -0.075 4.075 16 C 0.124 3.876 17 C -0.121 4.121 18 C -0.066 4.066 19 C -0.126 4.126 20 C 0.009 3.991 21 C 0.518 3.482 22 F -0.175 7.175 23 F -0.184 7.184 24 F -0.169 7.169 25 N -0.463 5.463 26 C -0.063 4.063 27 N -0.313 5.313 28 H 0.275 0.725 29 H 0.191 0.809 30 H 0.422 0.578 31 H 0.137 0.863 32 H 0.164 0.836 33 H 0.191 0.809 34 H 0.193 0.807 35 H 0.168 0.832 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.689 -24.990 -3.187 25.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.161 1.161 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.484 4.484 8 H 0.160 0.840 9 N 0.060 4.940 10 C -0.231 4.231 11 C -0.145 4.145 12 N -0.265 5.265 13 C 0.283 3.717 14 O -0.448 6.448 15 C -0.115 4.115 16 C -0.016 4.016 17 C -0.140 4.140 18 C -0.092 4.092 19 C -0.146 4.146 20 C -0.129 4.129 21 C 0.462 3.538 22 F -0.156 7.156 23 F -0.166 7.166 24 F -0.150 7.150 25 N -0.172 5.172 26 C -0.238 4.238 27 N -0.146 5.146 28 H 0.084 0.916 29 H 0.208 0.792 30 H 0.260 0.740 31 H 0.155 0.845 32 H 0.182 0.818 33 H 0.209 0.791 34 H 0.210 0.790 35 H 0.186 0.814 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.545 -22.732 -2.500 22.876 hybrid contribution -0.035 -0.270 0.067 0.281 sum -0.580 -23.002 -2.433 23.138 Atomic orbital electron populations 1.70428 1.08528 1.28901 1.37756 1.26914 0.96459 1.04463 0.94219 0.84523 0.79120 0.74343 0.78101 1.16099 1.19787 1.19985 1.20659 0.92956 0.80882 1.53920 0.84030 1.44853 1.03532 1.04938 1.40709 1.22036 0.98877 0.84117 1.18078 1.17340 0.92405 0.84277 1.20504 1.42445 1.09979 1.01962 1.72077 1.21171 0.83574 0.90413 0.76537 1.90650 1.27840 1.76077 1.50184 1.20727 0.93642 0.87877 1.09252 1.21036 0.94735 0.94636 0.91174 1.22670 0.98758 0.94637 0.97940 1.22140 0.91846 0.98173 0.97004 1.22187 1.02982 0.95616 0.93808 1.20882 0.93793 1.00586 0.97677 1.18180 0.79471 0.74624 0.81481 1.93201 1.95490 1.70365 1.56542 1.93235 1.93738 1.37769 1.91811 1.93186 1.37613 1.95932 1.88261 1.66769 1.02143 1.21726 1.26587 1.24081 0.99004 0.91050 1.09704 1.78142 0.92225 1.16678 1.27519 0.91561 0.79242 0.74007 0.84533 0.81831 0.79139 0.78959 0.81413 0.82356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -49.32 11.81 21.66 0.26 -49.07 16 2 C -0.01 -0.51 5.50 84.95 0.47 -0.04 16 3 Si 1.02 39.45 29.55 68.60 2.03 41.48 16 4 H -0.24 -8.15 7.11 99.48 0.71 -7.45 16 5 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 7 C -0.35 -19.03 10.25 84.01 0.86 -18.17 16 8 H 0.14 6.57 7.83 -2.91 -0.02 6.54 16 9 N -0.17 -9.70 3.74 -190.01 -0.71 -10.41 16 10 C -0.08 -3.76 11.49 83.38 0.96 -2.80 16 11 C -0.04 -1.81 6.90 37.73 0.26 -1.55 16 12 N -0.62 -20.15 5.47 -303.93 -1.66 -21.81 16 13 C 0.50 16.19 7.73 87.66 0.68 16.87 16 14 O -0.57 -25.58 12.49 -3.09 -0.04 -25.62 16 15 C -0.08 -1.34 6.10 29.11 0.18 -1.16 16 16 C 0.12 2.71 5.76 42.55 0.25 2.96 16 17 C -0.12 -1.51 9.71 22.36 0.22 -1.30 16 18 C -0.07 -0.73 10.18 22.47 0.23 -0.50 16 19 C -0.13 -2.15 9.44 22.36 0.21 -1.94 16 20 C 0.01 0.25 6.29 42.54 0.27 0.52 16 21 C 0.52 14.78 3.43 71.24 0.24 15.02 16 22 F -0.17 -4.69 17.30 44.97 0.78 -3.92 16 23 F -0.18 -6.73 17.04 44.97 0.77 -5.96 16 24 F -0.17 -4.24 16.44 44.97 0.74 -3.50 16 25 N -0.46 -14.06 8.83 -172.07 -1.52 -15.58 16 26 C -0.06 -3.59 10.85 85.42 0.93 -2.67 16 27 N -0.31 -19.62 10.40 -56.47 -0.59 -20.21 16 28 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.19 6.79 8.06 -2.91 -0.02 6.76 16 30 H 0.42 9.07 8.83 -92.71 -0.82 8.26 16 31 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.16 1.15 7.87 -2.39 -0.02 1.13 16 33 H 0.19 0.60 7.95 -2.91 -0.02 0.57 16 34 H 0.19 0.35 8.06 -2.91 -0.02 0.33 16 35 H 0.17 1.94 7.60 -2.91 -0.02 1.92 16 36 H 0.16 9.36 5.92 -2.91 -0.02 9.34 16 Total: -1.00 -91.47 336.58 6.16 -85.32 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.36 Total: 24.03 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 5.74 Total: 5.24 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -4.22 Total: -117.07 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.04 Total: -25.62 kcal Atomic # 9 Polarization: -15.66 SS G_CDS: 2.28 Total: -13.38 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -91.47 6.16 -85.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362163414.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.869 kcal (2) G-P(sol) polarization free energy of solvation -91.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds