Wall clock time and date at job start Sat Apr 11 2020 05:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86793 * 120.00143 * 2 1 4 4 H 1.48501 * 109.47214 * 270.00213 * 3 2 1 5 5 H 1.48503 * 109.47054 * 30.00356 * 3 2 1 6 6 H 1.48503 * 109.47135 * 150.00394 * 3 2 1 7 7 C 1.38657 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00238 * 179.97438 * 7 2 1 9 9 O 1.34833 * 120.00180 * 359.97438 * 7 2 1 10 10 C 1.35748 * 116.99987 * 185.08068 * 9 7 2 11 11 C 1.38902 * 120.07072 * 354.76081 * 10 9 7 12 12 C 1.38073 * 119.92815 * 180.25323 * 11 10 9 13 13 C 1.38325 * 120.07033 * 359.47507 * 12 11 10 14 14 C 1.38278 * 120.14043 * 0.27011 * 13 12 11 15 15 C 1.50692 * 119.96641 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47499 * 89.99897 * 15 14 13 17 17 O 1.21278 * 119.99651 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00291 * 179.97438 * 16 15 14 19 19 C 1.47073 * 136.05653 * 359.63105 * 18 16 15 20 20 C 1.53754 * 87.88510 * 152.96152 * 19 18 16 21 21 S 1.81406 * 114.26389 * 139.79403 * 20 19 18 22 22 N 1.65601 * 104.44881 * 86.47382 * 21 20 19 23 23 O 1.42093 * 110.54297 * 198.10275 * 21 20 19 24 24 O 1.42107 * 110.54023 * 334.84989 * 21 20 19 25 25 C 1.47069 * 136.06004 * 180.02562 * 18 16 15 26 26 C 1.38124 * 120.06675 * 359.97438 * 14 13 12 27 27 H 0.97001 * 119.99814 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.03332 * 359.97438 * 11 10 9 29 29 H 1.08000 * 119.96595 * 179.74524 * 12 11 10 30 30 H 1.08000 * 119.93111 * 180.25380 * 13 12 11 31 31 H 1.08999 * 109.47018 * 210.00112 * 15 14 13 32 32 H 1.09005 * 109.47290 * 329.99934 * 15 14 13 33 33 H 1.08998 * 113.46643 * 267.69977 * 19 18 16 34 34 H 1.08998 * 113.46319 * 38.13507 * 19 18 16 35 35 H 1.08990 * 114.39838 * 272.67707 * 20 19 18 36 36 H 0.96998 * 120.00029 * 359.97438 * 22 21 20 37 37 H 0.96996 * 119.99333 * 179.97438 * 22 21 20 38 38 H 1.08999 * 113.46366 * 321.86074 * 25 18 16 39 39 H 1.08997 * 113.47080 * 92.24243 * 25 18 16 40 40 H 1.07996 * 120.03714 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1060 11 6 3.4574 -3.4390 0.0992 12 6 4.2024 -4.5969 0.2025 13 6 3.5685 -5.8204 0.3237 14 6 2.1875 -5.8886 0.3361 15 6 1.5010 -7.2235 0.4688 16 6 1.2780 -7.5310 1.9271 17 8 1.6405 -6.7435 2.7751 18 7 0.6749 -8.6807 2.2889 19 6 0.1059 -9.8433 1.5906 20 6 0.4160 -10.6767 2.8449 21 16 -0.8771 -11.8703 3.2854 22 7 -0.5138 -13.2197 2.3969 23 8 -0.7300 -12.2893 4.6351 24 8 -2.1374 -11.4483 2.7824 25 6 0.2900 -9.3217 3.5553 26 6 1.4366 -4.7343 0.2280 27 1 -0.4850 0.8401 0.0004 28 1 3.9529 -2.4836 0.0087 29 1 5.2812 -4.5469 0.1932 30 1 4.1534 -6.7243 0.4084 31 1 0.5411 -7.1912 -0.0466 32 1 2.1256 -7.9990 0.0253 33 1 -0.9604 -9.7475 1.3857 34 1 0.6785 -10.1461 0.7139 35 1 1.4196 -11.1013 2.8665 36 1 0.2581 -13.2205 1.8096 37 1 -1.0731 -14.0094 2.4638 38 1 1.0195 -9.1802 4.3527 39 1 -0.7274 -9.0877 3.8686 40 1 0.3580 -4.7882 0.2374 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362731950.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:42 Heat of formation + Delta-G solvation = -93.875520 kcal Electronic energy + Delta-G solvation = -26124.888578 eV Core-core repulsion = 22033.109159 eV Total energy + Delta-G solvation = -4091.779419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.59403 -40.73888 -39.26433 -38.12872 -38.01452 -37.03193 -34.35715 -33.96867 -33.59124 -31.52096 -30.79310 -28.43124 -27.36165 -27.04412 -24.38187 -23.26621 -22.48994 -20.48315 -20.18208 -19.47170 -19.02056 -18.76134 -18.32623 -18.03711 -17.16777 -17.00628 -16.73893 -16.63773 -16.38962 -16.10703 -15.79370 -15.51325 -15.10745 -14.96755 -14.43632 -14.33405 -14.08089 -13.94415 -13.76971 -13.59480 -13.24015 -13.15919 -13.07361 -12.98430 -12.84886 -12.53104 -12.38637 -12.23617 -12.20015 -12.12294 -11.96128 -11.22582 -11.21503 -10.98094 -10.80390 -9.95098 -9.66001 -8.99205 -8.48264 -6.16858 -0.84891 0.48297 0.74271 1.32830 1.42460 1.47852 1.51098 1.75082 1.82848 2.16692 2.47558 2.71342 2.80576 3.09378 3.28718 3.42847 3.60261 3.78392 3.85750 3.93531 4.09191 4.21202 4.29831 4.38078 4.39879 4.41137 4.55218 4.60943 4.70075 4.72638 4.81145 5.05703 5.11637 5.28968 5.36521 5.63408 5.71216 5.73426 6.01577 6.22024 6.45541 6.50770 6.96283 7.04419 7.77854 8.75379 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.025784 B = 0.001993 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.695316 B =14046.335835 C =14585.798488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.026 4.026 3 Si 1.021 2.979 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.414 4.414 8 H 0.101 0.899 9 O -0.235 6.235 10 C 0.110 3.890 11 C -0.246 4.246 12 C -0.074 4.074 13 C -0.178 4.178 14 C -0.030 4.030 15 C -0.082 4.082 16 C 0.543 3.457 17 O -0.576 6.576 18 N -0.649 5.649 19 C 0.126 3.874 20 C -0.611 4.611 21 S 2.648 3.352 22 N -1.232 6.232 23 O -1.000 7.000 24 O -0.991 6.991 25 C 0.114 3.886 26 C -0.194 4.194 27 H 0.272 0.728 28 H 0.118 0.882 29 H 0.147 0.853 30 H 0.151 0.849 31 H 0.122 0.878 32 H 0.151 0.849 33 H 0.115 0.885 34 H 0.145 0.855 35 H 0.204 0.796 36 H 0.431 0.569 37 H 0.427 0.573 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.157 -30.557 0.208 30.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.223 4.223 3 Si 0.840 3.160 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.142 6.142 10 C 0.060 3.940 11 C -0.265 4.265 12 C -0.092 4.092 13 C -0.196 4.196 14 C -0.030 4.030 15 C -0.121 4.121 16 C 0.334 3.666 17 O -0.455 6.455 18 N -0.386 5.386 19 C 0.003 3.997 20 C -0.721 4.721 21 S 2.739 3.261 22 N -0.912 5.912 23 O -0.989 6.989 24 O -0.980 6.980 25 C -0.010 4.010 26 C -0.213 4.213 27 H 0.081 0.919 28 H 0.135 0.865 29 H 0.164 0.836 30 H 0.168 0.832 31 H 0.140 0.860 32 H 0.169 0.831 33 H 0.133 0.867 34 H 0.163 0.837 35 H 0.221 0.779 36 H 0.261 0.739 37 H 0.258 0.742 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.258 -29.503 1.296 29.711 hybrid contribution 0.499 1.165 -0.165 1.278 sum 3.758 -28.338 1.131 28.609 Atomic orbital electron populations 1.70195 1.08051 1.28768 1.49077 1.26638 0.96915 1.02822 0.95908 0.84565 0.77687 0.74399 0.79389 1.18421 1.19602 1.17829 1.21828 0.92504 0.81491 1.53183 0.88195 1.83935 1.35945 1.12573 1.81725 1.19888 0.91733 0.87925 0.94421 1.21316 0.93089 1.00286 1.11816 1.21153 1.00286 0.91449 0.96284 1.20987 0.93362 0.98268 1.06989 1.19193 0.93874 0.92941 0.97009 1.20650 1.04448 0.95389 0.91629 1.20683 0.76183 0.77990 0.91772 1.90782 1.52655 1.47448 1.54566 1.49625 1.58484 1.19470 1.11012 1.23177 1.02355 0.78940 0.95210 1.32364 1.22041 1.10096 1.07570 1.03517 0.74498 0.74768 0.73322 1.52642 1.43515 1.31597 1.63445 1.93594 1.86857 1.80456 1.37949 1.93611 1.40603 1.83018 1.80725 1.22705 1.02848 0.85354 0.90112 1.20232 0.99265 0.90564 1.11228 0.91857 0.86454 0.83566 0.83166 0.86016 0.83120 0.86702 0.83675 0.77888 0.73894 0.74173 0.88433 0.88470 0.87711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.52 13.67 21.61 0.30 -58.22 16 2 C -0.03 -1.52 5.49 84.83 0.47 -1.06 16 3 Si 1.02 44.37 29.55 68.60 2.03 46.39 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 7 C -0.41 -25.15 9.49 67.92 0.64 -24.50 16 8 H 0.10 5.59 5.20 -2.91 -0.02 5.57 16 9 O -0.23 -14.84 9.76 -22.75 -0.22 -15.06 16 10 C 0.11 5.83 6.65 22.58 0.15 5.98 16 11 C -0.25 -11.31 9.17 22.39 0.21 -11.11 16 12 C -0.07 -2.64 10.04 22.25 0.22 -2.42 16 13 C -0.18 -5.64 9.70 22.30 0.22 -5.42 16 14 C -0.03 -1.01 4.37 -19.88 -0.09 -1.10 16 15 C -0.08 -1.80 5.66 29.10 0.16 -1.64 16 16 C 0.54 14.54 8.07 87.66 0.71 15.25 16 17 O -0.58 -22.72 16.81 -3.02 -0.05 -22.77 16 18 N -0.65 -11.29 3.69 -857.80 -3.16 -14.45 16 19 C 0.13 0.76 8.01 83.27 0.67 1.43 16 20 C -0.61 -2.89 4.79 31.02 0.15 -2.74 16 21 S 2.65 22.79 6.02 -56.49 -0.34 22.45 16 22 N -1.23 -0.66 9.43 37.02 0.35 -0.31 16 23 O -1.00 -17.85 18.10 -127.65 -2.31 -20.16 16 24 O -0.99 -16.33 17.25 -127.65 -2.20 -18.54 16 25 C 0.11 1.64 8.22 83.19 0.68 2.33 16 26 C -0.19 -8.74 9.65 22.39 0.22 -8.52 16 27 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 28 H 0.12 5.46 5.64 -2.91 -0.02 5.45 16 29 H 0.15 4.07 8.06 -2.91 -0.02 4.04 16 30 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 31 H 0.12 2.24 8.08 -2.39 -0.02 2.22 16 32 H 0.15 1.78 8.09 -2.38 -0.02 1.76 16 33 H 0.12 0.71 7.42 -2.39 -0.02 0.69 16 34 H 0.15 -0.33 8.14 -2.39 -0.02 -0.35 16 35 H 0.20 -0.46 8.14 -2.39 -0.02 -0.48 16 36 H 0.43 -2.83 8.83 -96.75 -0.85 -3.68 16 37 H 0.43 -0.02 8.96 -96.75 -0.87 -0.88 16 38 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.10 1.34 8.11 -2.39 -0.02 1.32 16 40 H 0.10 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -102.27 362.13 -1.82 -104.08 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -0.61 Total: 10.11 kcal Atomic # 6 Polarization: -37.94 SS G_CDS: 4.41 Total: -33.53 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: -2.52 Total: -72.98 kcal Atomic # 8 Polarization: -71.73 SS G_CDS: -4.79 Total: -76.52 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 22.79 SS G_CDS: -0.34 Total: 22.45 kcal Total: -102.27 -1.82 -104.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362731950.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.209 kcal (2) G-P(sol) polarization free energy of solvation -102.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds