Wall clock time and date at job start Sat Apr 11 2020 05:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34779 * 119.99943 * 154.99835 * 11 9 7 13 13 O 1.21573 * 120.00203 * 0.02562 * 12 11 9 14 14 C 1.47664 * 119.99929 * 180.02562 * 12 11 9 15 15 C 1.40235 * 120.49838 * 179.72616 * 14 12 11 16 16 C 1.38024 * 118.35708 * 179.72886 * 15 14 12 17 17 C 1.39158 * 119.25362 * 0.52622 * 16 15 14 18 18 N 1.39492 * 119.52769 * 179.72124 * 17 16 15 19 19 C 1.37225 * 126.49668 * 184.73049 * 18 17 16 20 20 C 1.34595 * 106.82501 * 179.87397 * 19 18 17 21 21 N 1.34170 * 108.23186 * 0.38971 * 20 19 18 22 22 C 1.30455 * 109.39233 * 359.75089 * 21 20 19 23 23 N 1.32429 * 120.94398 * 359.73298 * 17 16 15 24 24 C 1.31639 * 121.80359 * 0.02562 * 23 17 16 25 25 C 1.53000 * 109.47355 * 60.00012 * 9 7 2 26 26 F 1.39897 * 109.46935 * 59.99980 * 25 9 7 27 27 F 1.39899 * 109.47307 * 180.02562 * 25 9 7 28 28 F 1.39901 * 109.47163 * 300.00307 * 25 9 7 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00208 * 335.00126 * 11 9 7 31 31 H 1.07997 * 120.81549 * 359.97438 * 15 14 12 32 32 H 1.07998 * 120.37224 * 180.25919 * 16 15 14 33 33 H 1.08004 * 126.58701 * 359.97438 * 19 18 17 34 34 H 1.08000 * 125.88369 * 180.10578 * 20 19 18 35 35 H 1.07998 * 125.73096 * 179.97438 * 22 21 20 36 36 H 1.07997 * 119.68236 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 0.4928 13 8 0.7164 -4.9705 0.9374 14 6 2.7965 -5.9345 0.4933 15 6 2.4285 -7.1855 1.0092 16 6 3.3585 -8.2050 0.9825 17 6 4.6240 -7.9576 0.4592 18 7 5.5702 -8.9822 0.4347 19 6 6.8796 -8.8747 0.0386 20 6 7.4297 -10.0954 0.1759 21 7 6.4861 -10.9319 0.6341 22 6 5.3683 -10.2784 0.7934 23 7 4.9428 -6.7632 -0.0158 24 6 4.0854 -5.7644 -0.0141 25 6 0.3709 -2.5799 -1.2494 26 9 1.1748 -2.5056 -2.3920 27 9 -0.3290 -3.7912 -1.2491 28 9 -0.5381 -1.5165 -1.2489 29 1 -0.4850 0.8401 0.0004 30 1 3.0968 -3.4866 -0.3555 31 1 1.4405 -7.3482 1.4137 32 1 3.1083 -9.1826 1.3674 33 1 7.3743 -7.9816 -0.3139 34 1 8.4530 -10.3575 -0.0489 35 1 4.4385 -10.6967 1.1498 36 1 4.3820 -4.8043 -0.4097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363530452.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:48 Heat of formation + Delta-G solvation = -57.578445 kcal Electronic energy + Delta-G solvation = -28931.711784 eV Core-core repulsion = 24196.498384 eV Total energy + Delta-G solvation = -4735.213400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.46843 -46.12590 -45.72521 -42.66645 -40.62488 -38.79720 -34.96200 -34.54364 -33.02661 -32.74283 -30.77311 -29.74502 -28.29549 -25.08524 -24.66241 -24.19518 -22.24028 -21.39041 -21.19454 -20.23526 -19.18892 -18.31015 -17.17119 -16.89526 -16.75660 -16.63551 -16.07400 -15.79819 -15.55562 -15.09074 -14.79806 -14.56264 -14.22028 -14.15302 -14.06296 -13.63668 -13.45743 -13.30464 -13.05738 -12.93287 -12.60616 -12.51361 -12.38849 -12.10046 -11.92944 -11.29597 -11.08441 -10.95848 -10.90114 -10.54499 -10.50204 -10.33982 -10.26776 -9.82049 -9.56443 -9.13878 -8.85063 -8.79485 -8.47889 -6.34453 -4.59828 0.07274 0.78894 1.76932 2.07736 2.77455 2.96209 3.13384 3.18561 3.19809 3.43795 3.67623 3.81753 4.11540 4.14173 4.30859 4.42953 4.48522 4.49543 4.79873 4.82661 4.92793 5.10669 5.12251 5.25849 5.49450 5.65353 5.73899 5.75488 5.86386 5.97613 6.07315 6.33774 6.74671 6.75451 6.90389 7.30019 7.32421 7.51170 7.63024 8.03234 8.34674 8.56405 9.08634 10.57023 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.020718 B = 0.002722 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.134932 B =10282.806555 C =10991.911634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.066 3.934 3 Si 0.916 3.084 4 H -0.283 1.283 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.557 4.557 8 H 0.078 0.922 9 C 0.246 3.754 10 H 0.089 0.911 11 N -0.702 5.702 12 C 0.553 3.447 13 O -0.524 6.524 14 C -0.181 4.181 15 C 0.009 3.991 16 C -0.186 4.186 17 C 0.357 3.643 18 N -0.411 5.411 19 C -0.022 4.022 20 C -0.032 4.032 21 N -0.479 5.479 22 C 0.194 3.806 23 N -0.500 5.500 24 C 0.169 3.831 25 C 0.417 3.583 26 F -0.208 7.208 27 F -0.218 7.218 28 F -0.135 7.135 29 H 0.270 0.730 30 H 0.398 0.602 31 H 0.161 0.839 32 H 0.149 0.851 33 H 0.184 0.816 34 H 0.177 0.823 35 H 0.213 0.787 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.634 -12.913 0.891 15.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.143 4.143 3 Si 0.742 3.258 4 H -0.208 1.208 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.593 4.593 8 H 0.097 0.903 9 C 0.141 3.859 10 H 0.106 0.894 11 N -0.352 5.352 12 C 0.338 3.662 13 O -0.401 6.401 14 C -0.187 4.187 15 C -0.017 4.017 16 C -0.208 4.208 17 C 0.128 3.872 18 N -0.093 5.093 19 C -0.152 4.152 20 C -0.177 4.177 21 N -0.196 5.196 22 C -0.087 4.087 23 N -0.211 5.211 24 C 0.010 3.990 25 C 0.360 3.640 26 F -0.190 7.190 27 F -0.200 7.200 28 F -0.116 7.116 29 H 0.081 0.919 30 H 0.233 0.767 31 H 0.179 0.821 32 H 0.167 0.833 33 H 0.201 0.799 34 H 0.194 0.806 35 H 0.229 0.771 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 8.545 -13.526 1.008 16.031 hybrid contribution -0.213 1.673 -0.420 1.738 sum 8.333 -11.853 0.588 14.501 Atomic orbital electron populations 1.70379 1.05894 1.27703 1.43106 1.25080 0.95174 1.00188 0.93867 0.86248 0.79354 0.81155 0.79000 1.20806 1.19708 1.19732 1.20819 0.93796 0.87971 1.56738 0.90346 1.19805 0.88608 0.85513 0.92016 0.89377 1.46027 1.17341 1.10406 1.61390 1.17889 0.86845 0.82484 0.78985 1.90807 1.20366 1.82782 1.46177 1.21263 0.96372 0.96515 1.04549 1.21653 0.99736 0.89759 0.90568 1.21521 0.92280 1.02010 1.05030 1.18338 0.87115 0.87123 0.94589 1.43137 1.09253 1.08331 1.48623 1.23011 0.83728 1.01927 1.06519 1.22418 0.99985 0.89483 1.05789 1.70329 0.99412 1.32410 1.17415 1.25392 1.00350 0.78975 1.04027 1.66990 1.36819 0.99010 1.18288 1.22892 0.87749 0.96543 0.91824 1.23117 0.80912 0.72878 0.87047 1.92996 1.74395 1.96177 1.55454 1.93071 1.81478 1.48452 1.96970 1.93415 1.68317 1.53700 1.96179 0.91897 0.76689 0.82131 0.83307 0.79923 0.80620 0.77068 0.80877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.01 9.50 55.43 0.53 -21.48 16 2 C 0.07 1.64 5.20 -17.82 -0.09 1.55 16 3 Si 0.92 19.22 29.54 -169.99 -5.02 14.20 16 4 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 7 C -0.56 -13.33 8.46 -34.44 -0.29 -13.62 16 8 H 0.08 1.75 7.74 -52.49 -0.41 1.34 16 9 C 0.25 5.69 2.21 -69.09 -0.15 5.53 16 10 H 0.09 2.28 7.58 -51.92 -0.39 1.89 16 11 N -0.70 -12.95 4.94 -55.94 -0.28 -13.23 16 12 C 0.55 9.79 7.31 -12.41 -0.09 9.70 16 13 O -0.52 -11.07 14.98 5.30 0.08 -10.99 16 14 C -0.18 -2.43 5.89 -104.81 -0.62 -3.04 16 15 C 0.01 0.10 9.70 -38.91 -0.38 -0.27 16 16 C -0.19 -1.73 9.48 -39.32 -0.37 -2.10 16 17 C 0.36 3.93 7.49 -154.51 -1.16 2.78 16 18 N -0.41 -4.32 2.98 -63.80 -0.19 -4.51 16 19 C -0.02 -0.23 11.16 -16.43 -0.18 -0.41 16 20 C -0.03 -0.32 11.85 -17.82 -0.21 -0.53 16 21 N -0.48 -5.42 11.24 -14.45 -0.16 -5.59 16 22 C 0.19 1.84 11.89 -89.53 -1.06 0.77 16 23 N -0.50 -6.00 9.87 -11.99 -0.12 -6.12 16 24 C 0.17 2.01 10.71 -17.14 -0.18 1.82 16 25 C 0.42 10.12 2.81 37.16 0.10 10.22 16 26 F -0.21 -4.87 16.94 2.25 0.04 -4.84 16 27 F -0.22 -5.23 15.68 2.25 0.04 -5.20 16 28 F -0.14 -3.58 12.91 2.25 0.03 -3.55 16 29 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.40 6.11 6.59 -40.82 -0.27 5.84 16 31 H 0.16 1.67 7.73 -52.49 -0.41 1.26 16 32 H 0.15 0.86 6.75 -52.49 -0.35 0.51 16 33 H 0.18 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.21 1.16 7.05 -52.49 -0.37 0.79 16 36 H 0.17 1.72 6.41 -52.49 -0.34 1.38 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -31.20 328.33 -7.32 -38.52 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -2.52 Total: 5.44 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: -4.69 Total: 12.39 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.22 Total: -50.93 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 9 Polarization: -13.69 SS G_CDS: 0.10 Total: -13.58 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.20 -7.32 -38.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363530452.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.056 kcal (2) G-P(sol) polarization free energy of solvation -31.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds