Wall clock time and date at job start Sat Apr 11 2020 05:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99856 * 2 1 4 4 H 1.48502 * 109.47020 * 264.80903 * 3 2 1 5 5 H 1.48499 * 109.47346 * 24.81012 * 3 2 1 6 6 H 1.48495 * 109.47038 * 144.81344 * 3 2 1 7 7 C 1.37875 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99785 * 4.87412 * 7 2 1 9 9 C 1.50705 * 119.99933 * 184.87738 * 7 2 1 10 10 H 1.08996 * 109.46637 * 334.94173 * 9 7 2 11 11 N 1.46500 * 109.47037 * 94.94002 * 9 7 2 12 12 C 1.34776 * 119.99995 * 204.99969 * 11 9 7 13 13 O 1.21580 * 119.99787 * 0.02562 * 12 11 9 14 14 C 1.47661 * 120.00126 * 179.72586 * 12 11 9 15 15 C 1.40227 * 120.49479 * 179.97438 * 14 12 11 16 16 C 1.38028 * 118.35336 * 179.80327 * 15 14 12 17 17 C 1.39158 * 119.25537 * 0.47369 * 16 15 14 18 18 N 1.39490 * 119.52795 * 179.74399 * 17 16 15 19 19 C 1.37231 * 126.49484 * 184.73297 * 18 17 16 20 20 C 1.34592 * 106.82271 * 179.84047 * 19 18 17 21 21 N 1.34176 * 108.23327 * 0.42977 * 20 19 18 22 22 C 1.30453 * 109.38733 * 359.72657 * 21 20 19 23 23 N 1.32432 * 120.94436 * 359.76769 * 17 16 15 24 24 C 1.31637 * 121.80114 * 359.97438 * 23 17 16 25 25 C 1.52993 * 109.46849 * 214.93957 * 9 7 2 26 26 F 1.39896 * 109.47457 * 294.93997 * 25 9 7 27 27 F 1.39905 * 109.47142 * 54.93851 * 25 9 7 28 28 F 1.39902 * 109.47275 * 174.93448 * 25 9 7 29 29 H 0.97003 * 119.99587 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99910 * 24.99893 * 11 9 7 31 31 H 1.07999 * 120.82501 * 0.02562 * 15 14 12 32 32 H 1.08000 * 120.37219 * 180.19489 * 16 15 14 33 33 H 1.08001 * 126.59235 * 0.02562 * 19 18 17 34 34 H 1.08000 * 125.88175 * 180.15042 * 20 19 18 35 35 H 1.08002 * 125.72635 * 179.97438 * 22 21 20 36 36 H 1.08000 * 119.68343 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6063 1.9831 -1.3944 5 1 1.3961 2.6819 0.5875 6 1 3.4876 1.4744 0.8068 7 6 2.0045 -1.1940 -0.0005 8 1 1.4674 -2.1276 -0.0804 9 6 3.5075 -1.1964 0.1104 10 1 3.9003 -0.2483 -0.2565 11 7 3.8933 -1.3752 1.5124 12 6 5.0874 -0.9244 1.9454 13 8 5.8441 -0.3690 1.1726 14 6 5.4738 -1.0991 3.3598 15 6 6.7138 -0.6346 3.8213 16 6 7.0280 -0.8175 5.1528 17 6 6.1162 -1.4604 5.9847 18 7 6.4303 -1.6531 7.3300 19 6 5.6839 -2.3437 8.2515 20 6 6.3529 -2.2845 9.4179 21 7 7.4726 -1.5710 9.2239 22 6 7.5311 -1.1871 7.9785 23 7 4.9549 -1.8923 5.5171 24 6 4.6128 -1.7342 4.2559 25 6 4.0787 -2.3431 -0.7259 26 9 3.6669 -3.5655 -0.1844 27 9 3.6155 -2.2364 -2.0418 28 9 5.4761 -2.2761 -0.7166 29 1 -0.4850 0.8401 0.0004 30 1 3.2894 -1.8180 2.1290 31 1 7.4043 -0.1426 3.1524 32 1 7.9728 -0.4697 5.5437 33 1 4.7422 -2.8419 8.0742 34 1 6.0400 -2.7302 10.3505 35 1 8.3209 -0.5977 7.5367 36 1 3.6567 -2.0995 3.9112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363530461.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:50 Heat of formation + Delta-G solvation = -81.252355 kcal Electronic energy + Delta-G solvation = -28967.094271 eV Core-core repulsion = 24230.854293 eV Total energy + Delta-G solvation = -4736.239978 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.17468 -46.70165 -46.64872 -42.65502 -40.61772 -38.84280 -35.08394 -34.53566 -33.01359 -32.74152 -30.92316 -29.81673 -28.78365 -25.12340 -25.01319 -24.20412 -22.16664 -21.35201 -21.17753 -20.31476 -19.18219 -18.63438 -17.68416 -17.41936 -17.02270 -16.60892 -16.57729 -16.05662 -15.58632 -15.21907 -14.81251 -14.57678 -14.21183 -14.14216 -14.00450 -13.66698 -13.61864 -13.55109 -13.42744 -13.18631 -13.11783 -12.95667 -12.86513 -12.79775 -12.64152 -11.95494 -11.29230 -11.03180 -10.85603 -10.49462 -10.35515 -10.33119 -10.23097 -9.94902 -9.67654 -9.13025 -9.10441 -8.81355 -8.62325 -6.66046 -4.82676 0.08307 0.80181 1.77831 2.09033 2.78354 2.94035 2.99901 3.10817 3.17220 3.34554 3.61130 3.83854 3.85046 3.97956 4.14911 4.31733 4.48510 4.51241 4.65915 4.78092 4.89162 5.04381 5.11880 5.12636 5.14035 5.27333 5.32609 5.50696 5.73255 5.87262 5.99520 6.14185 6.35042 6.73256 6.76344 6.86582 7.34079 7.64075 7.68572 8.03852 8.39036 8.50640 8.88905 10.41966 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.016028 B = 0.003108 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.470764 B = 9006.326902 C = 9553.540191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.101 3.899 3 Si 0.866 3.134 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.255 1.255 7 C -0.539 4.539 8 H 0.096 0.904 9 C 0.203 3.797 10 H 0.093 0.907 11 N -0.703 5.703 12 C 0.547 3.453 13 O -0.534 6.534 14 C -0.184 4.184 15 C 0.008 3.992 16 C -0.187 4.187 17 C 0.357 3.643 18 N -0.411 5.411 19 C -0.022 4.022 20 C -0.033 4.033 21 N -0.479 5.479 22 C 0.194 3.806 23 N -0.499 5.499 24 C 0.171 3.829 25 C 0.438 3.562 26 F -0.192 7.192 27 F -0.180 7.180 28 F -0.196 7.196 29 H 0.277 0.723 30 H 0.400 0.600 31 H 0.160 0.840 32 H 0.149 0.851 33 H 0.184 0.816 34 H 0.177 0.823 35 H 0.213 0.787 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.354 -2.016 10.984 15.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.110 4.110 3 Si 0.691 3.309 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.576 4.576 8 H 0.114 0.886 9 C 0.100 3.900 10 H 0.110 0.890 11 N -0.355 5.355 12 C 0.332 3.668 13 O -0.412 6.412 14 C -0.190 4.190 15 C -0.018 4.018 16 C -0.209 4.209 17 C 0.128 3.872 18 N -0.093 5.093 19 C -0.151 4.151 20 C -0.177 4.177 21 N -0.196 5.196 22 C -0.088 4.088 23 N -0.210 5.210 24 C 0.012 3.988 25 C 0.383 3.617 26 F -0.173 7.173 27 F -0.161 7.161 28 F -0.177 7.177 29 H 0.087 0.913 30 H 0.237 0.763 31 H 0.177 0.823 32 H 0.166 0.834 33 H 0.201 0.799 34 H 0.194 0.806 35 H 0.229 0.771 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 10.667 -1.791 11.529 15.809 hybrid contribution -0.002 0.623 -0.988 1.168 sum 10.666 -1.169 10.541 15.041 Atomic orbital electron populations 1.69850 1.06419 1.28598 1.43726 1.25007 0.94831 0.99299 0.91843 0.86954 0.80796 0.82862 0.80277 1.18839 1.20370 1.17874 1.20731 0.86107 0.96567 1.54243 0.88633 1.20069 0.98019 0.92426 0.79493 0.88963 1.47524 1.16808 1.58491 1.12702 1.18205 0.82664 0.79594 0.86297 1.90772 1.51509 1.42786 1.56112 1.21337 0.97108 1.04097 0.96498 1.21643 0.94643 0.91528 0.94029 1.21513 1.01196 1.04211 0.94029 1.18345 0.91161 0.94326 0.83320 1.43135 1.19435 1.40434 1.06341 1.23021 1.00473 1.02585 0.89043 1.22419 0.93142 1.03689 0.98443 1.70330 1.20745 1.14019 1.14472 1.25378 0.91796 1.03122 0.88496 1.67006 1.16103 1.21034 1.16890 1.22942 0.98656 0.91203 0.86038 1.21655 0.74913 0.85116 0.80062 1.93074 1.90261 1.48061 1.85928 1.93119 1.88687 1.96162 1.38140 1.93147 1.31495 1.96529 1.96552 0.91253 0.76312 0.82261 0.83362 0.79894 0.80606 0.77105 0.80673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.39 13.96 55.43 0.77 -21.62 16 2 C 0.10 2.51 5.47 -17.82 -0.10 2.41 16 3 Si 0.87 19.05 26.99 -169.99 -4.59 14.47 16 4 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.25 -5.61 6.82 56.52 0.39 -5.22 16 7 C -0.54 -12.93 8.52 -34.44 -0.29 -13.23 16 8 H 0.10 2.48 8.00 -52.49 -0.42 2.06 16 9 C 0.20 4.36 1.71 -69.08 -0.12 4.24 16 10 H 0.09 2.11 4.73 -51.93 -0.25 1.86 16 11 N -0.70 -12.88 4.86 -55.94 -0.27 -13.16 16 12 C 0.55 9.66 7.42 -12.41 -0.09 9.57 16 13 O -0.53 -10.94 14.98 5.30 0.08 -10.86 16 14 C -0.18 -2.54 5.89 -104.81 -0.62 -3.16 16 15 C 0.01 0.09 9.70 -38.91 -0.38 -0.28 16 16 C -0.19 -1.80 9.48 -39.32 -0.37 -2.17 16 17 C 0.36 4.08 7.49 -154.51 -1.16 2.92 16 18 N -0.41 -4.46 2.98 -63.81 -0.19 -4.65 16 19 C -0.02 -0.23 11.16 -16.42 -0.18 -0.41 16 20 C -0.03 -0.33 11.85 -17.82 -0.21 -0.55 16 21 N -0.48 -5.55 11.24 -14.45 -0.16 -5.71 16 22 C 0.19 1.88 11.88 -89.54 -1.06 0.82 16 23 N -0.50 -6.26 9.87 -11.99 -0.12 -6.37 16 24 C 0.17 2.13 10.71 -17.14 -0.18 1.95 16 25 C 0.44 9.21 2.83 37.15 0.11 9.31 16 26 F -0.19 -3.87 16.93 2.25 0.04 -3.83 16 27 F -0.18 -3.88 16.89 2.25 0.04 -3.85 16 28 F -0.20 -4.07 15.83 2.25 0.04 -4.03 16 29 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.40 6.36 6.65 -40.82 -0.27 6.09 16 31 H 0.16 1.68 7.73 -52.49 -0.41 1.28 16 32 H 0.15 0.90 6.75 -52.49 -0.35 0.54 16 33 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.21 1.21 7.05 -52.49 -0.37 0.84 16 36 H 0.18 1.88 6.41 -52.49 -0.34 1.55 16 LS Contribution 331.44 15.07 4.99 4.99 Total: -1.00 -30.22 331.44 -6.43 -36.66 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -2.40 Total: 6.55 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: -4.66 Total: 11.41 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.03 Total: -51.51 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.86 kcal Atomic # 9 Polarization: -11.82 SS G_CDS: 0.11 Total: -11.71 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.59 Total: 14.47 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.22 -6.43 -36.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363530461.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.593 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds