Wall clock time and date at job start Sat Apr 11 2020 05:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99856 * 2 1 4 4 H 1.48502 * 109.47020 * 264.80903 * 3 2 1 5 5 H 1.48499 * 109.47346 * 24.81012 * 3 2 1 6 6 H 1.48495 * 109.47038 * 144.81344 * 3 2 1 7 7 C 1.37875 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99785 * 4.87412 * 7 2 1 9 9 C 1.50705 * 119.99933 * 184.87738 * 7 2 1 10 10 H 1.08996 * 109.46637 * 334.94173 * 9 7 2 11 11 N 1.46500 * 109.47037 * 94.94002 * 9 7 2 12 12 C 1.34776 * 119.99995 * 204.99969 * 11 9 7 13 13 O 1.21580 * 119.99787 * 0.02562 * 12 11 9 14 14 C 1.47661 * 120.00126 * 179.72586 * 12 11 9 15 15 C 1.40227 * 120.49479 * 179.97438 * 14 12 11 16 16 C 1.38028 * 118.35336 * 179.80327 * 15 14 12 17 17 C 1.39158 * 119.25537 * 0.47369 * 16 15 14 18 18 N 1.39490 * 119.52795 * 179.74399 * 17 16 15 19 19 C 1.37231 * 126.49484 * 184.73297 * 18 17 16 20 20 C 1.34592 * 106.82271 * 179.84047 * 19 18 17 21 21 N 1.34176 * 108.23327 * 0.42977 * 20 19 18 22 22 C 1.30453 * 109.38733 * 359.72657 * 21 20 19 23 23 N 1.32432 * 120.94436 * 359.76769 * 17 16 15 24 24 C 1.31637 * 121.80114 * 359.97438 * 23 17 16 25 25 C 1.52993 * 109.46849 * 214.93957 * 9 7 2 26 26 F 1.39896 * 109.47457 * 294.93997 * 25 9 7 27 27 F 1.39905 * 109.47142 * 54.93851 * 25 9 7 28 28 F 1.39902 * 109.47275 * 174.93448 * 25 9 7 29 29 H 0.97003 * 119.99587 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99910 * 24.99893 * 11 9 7 31 31 H 1.07999 * 120.82501 * 0.02562 * 15 14 12 32 32 H 1.08000 * 120.37219 * 180.19489 * 16 15 14 33 33 H 1.08001 * 126.59235 * 0.02562 * 19 18 17 34 34 H 1.08000 * 125.88175 * 180.15042 * 20 19 18 35 35 H 1.08002 * 125.72635 * 179.97438 * 22 21 20 36 36 H 1.08000 * 119.68343 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6063 1.9831 -1.3944 5 1 1.3961 2.6819 0.5875 6 1 3.4876 1.4744 0.8068 7 6 2.0045 -1.1940 -0.0005 8 1 1.4674 -2.1276 -0.0804 9 6 3.5075 -1.1964 0.1104 10 1 3.9003 -0.2483 -0.2565 11 7 3.8933 -1.3752 1.5124 12 6 5.0874 -0.9244 1.9454 13 8 5.8441 -0.3690 1.1726 14 6 5.4738 -1.0991 3.3598 15 6 6.7138 -0.6346 3.8213 16 6 7.0280 -0.8175 5.1528 17 6 6.1162 -1.4604 5.9847 18 7 6.4303 -1.6531 7.3300 19 6 5.6839 -2.3437 8.2515 20 6 6.3529 -2.2845 9.4179 21 7 7.4726 -1.5710 9.2239 22 6 7.5311 -1.1871 7.9785 23 7 4.9549 -1.8923 5.5171 24 6 4.6128 -1.7342 4.2559 25 6 4.0787 -2.3431 -0.7259 26 9 3.6669 -3.5655 -0.1844 27 9 3.6155 -2.2364 -2.0418 28 9 5.4761 -2.2761 -0.7166 29 1 -0.4850 0.8401 0.0004 30 1 3.2894 -1.8180 2.1290 31 1 7.4043 -0.1426 3.1524 32 1 7.9728 -0.4697 5.5437 33 1 4.7422 -2.8419 8.0742 34 1 6.0400 -2.7302 10.3505 35 1 8.3209 -0.5977 7.5367 36 1 3.6567 -2.0995 3.9112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363530461.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:49 Heat of formation + Delta-G solvation = -98.737138 kcal Electronic energy + Delta-G solvation = -28967.852468 eV Core-core repulsion = 24230.854293 eV Total energy + Delta-G solvation = -4736.998175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.88434 -48.39371 -48.37233 -43.43526 -41.65244 -40.15066 -36.72063 -35.43740 -34.55898 -33.87408 -32.11123 -30.74743 -30.03801 -26.92071 -26.04369 -25.09408 -23.48527 -22.55304 -22.00176 -21.59354 -20.31495 -19.91966 -19.36712 -18.93070 -18.54017 -18.33463 -17.78867 -16.88871 -16.76491 -16.38393 -16.15073 -15.87137 -15.42800 -15.27913 -15.10442 -14.96326 -14.86540 -14.83045 -14.75697 -14.69451 -14.57346 -14.51879 -14.38079 -14.24602 -13.88785 -13.65059 -13.05440 -12.62149 -12.01348 -11.91010 -11.86384 -11.46721 -11.28171 -11.20698 -11.03138 -10.82414 -10.28169 -9.94596 -9.56997 -8.56722 -6.76163 -0.85297 -0.05618 0.92871 1.25503 1.29368 1.33163 1.40429 1.70897 1.88950 2.04107 2.12692 2.15609 2.63140 2.89814 2.98659 3.24152 3.32389 3.37964 3.44699 3.59886 3.61136 3.73345 3.87862 4.04748 4.35148 4.36306 4.41701 4.52189 4.72340 4.84529 4.92500 5.06065 5.12691 5.31900 5.61341 5.84999 5.99237 6.42647 6.46729 6.55716 6.88100 6.97591 7.09908 8.55268 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.016028 B = 0.003108 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.470764 B = 9006.326902 C = 9553.540191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.065 3.935 3 Si 0.917 3.083 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.538 4.538 8 H 0.069 0.931 9 C 0.211 3.789 10 H 0.083 0.917 11 N -0.704 5.704 12 C 0.550 3.450 13 O -0.564 6.564 14 C -0.204 4.204 15 C 0.012 3.988 16 C -0.170 4.170 17 C 0.354 3.646 18 N -0.419 5.419 19 C -0.039 4.039 20 C -0.037 4.037 21 N -0.510 5.510 22 C 0.201 3.799 23 N -0.514 5.514 24 C 0.174 3.826 25 C 0.440 3.560 26 F -0.187 7.187 27 F -0.184 7.184 28 F -0.192 7.192 29 H 0.281 0.719 30 H 0.412 0.588 31 H 0.170 0.830 32 H 0.191 0.809 33 H 0.189 0.811 34 H 0.195 0.805 35 H 0.250 0.750 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.418 -1.388 12.476 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.740 3.260 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.106 3.894 10 H 0.100 0.900 11 N -0.356 5.356 12 C 0.338 3.662 13 O -0.444 6.444 14 C -0.210 4.210 15 C -0.014 4.014 16 C -0.192 4.192 17 C 0.126 3.874 18 N -0.102 5.102 19 C -0.167 4.167 20 C -0.180 4.180 21 N -0.227 5.227 22 C -0.080 4.080 23 N -0.226 5.226 24 C 0.015 3.985 25 C 0.384 3.616 26 F -0.168 7.168 27 F -0.166 7.166 28 F -0.174 7.174 29 H 0.090 0.910 30 H 0.250 0.750 31 H 0.187 0.813 32 H 0.208 0.792 33 H 0.207 0.793 34 H 0.212 0.788 35 H 0.266 0.734 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 12.730 -1.187 13.064 18.280 hybrid contribution -0.545 0.336 -1.336 1.482 sum 12.186 -0.850 11.728 16.934 Atomic orbital electron populations 1.69923 1.07671 1.29451 1.45859 1.25550 0.95246 1.01779 0.91656 0.86173 0.79671 0.79997 0.80176 1.18733 1.19691 1.17901 1.20663 0.87280 0.95468 1.54195 0.91327 1.19765 0.96390 0.92271 0.80962 0.89950 1.47046 1.17868 1.59161 1.11570 1.18594 0.81590 0.78271 0.87752 1.90750 1.52195 1.44054 1.57398 1.21006 0.98902 1.06852 0.94195 1.21819 0.93718 0.90888 0.95020 1.21843 1.02147 1.02504 0.92694 1.18662 0.91103 0.93844 0.83789 1.43272 1.19940 1.40826 1.06148 1.23240 1.01045 1.03200 0.89261 1.22804 0.92767 1.03231 0.99214 1.70357 1.21531 1.15181 1.15637 1.26195 0.91762 1.02042 0.88019 1.67016 1.17121 1.21806 1.16687 1.23005 0.98809 0.90790 0.85939 1.21570 0.75039 0.85234 0.79786 1.93081 1.90236 1.47687 1.85824 1.93109 1.88775 1.96202 1.38518 1.93152 1.31148 1.96533 1.96520 0.90951 0.74963 0.81278 0.79192 0.79345 0.78764 0.73377 0.79887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.66 13.96 21.45 0.30 -47.36 16 2 C 0.06 3.23 5.47 84.65 0.46 3.70 16 3 Si 0.92 39.17 26.99 68.60 1.85 41.02 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.25 -10.82 6.82 99.48 0.68 -10.14 16 7 C -0.54 -26.17 8.52 25.60 0.22 -25.95 16 8 H 0.07 3.67 8.00 -2.91 -0.02 3.64 16 9 C 0.21 9.02 1.71 44.24 0.08 9.10 16 10 H 0.08 3.73 4.73 -2.39 -0.01 3.72 16 11 N -0.70 -25.41 4.86 -449.16 -2.18 -27.59 16 12 C 0.55 18.84 7.42 86.73 0.64 19.49 16 13 O -0.56 -22.52 14.98 -3.97 -0.06 -22.57 16 14 C -0.20 -5.27 5.89 -19.99 -0.12 -5.38 16 15 C 0.01 0.24 9.70 22.70 0.22 0.46 16 16 C -0.17 -2.61 9.48 22.44 0.21 -2.40 16 17 C 0.35 7.10 7.49 132.89 1.00 8.09 16 18 N -0.42 -7.96 2.98 -355.78 -1.06 -9.02 16 19 C -0.04 -0.75 11.16 83.01 0.93 0.18 16 20 C -0.04 -0.69 11.85 83.50 0.99 0.30 16 21 N -0.51 -10.61 11.24 -199.64 -2.24 -12.85 16 22 C 0.20 3.24 11.88 179.97 2.14 5.38 16 23 N -0.51 -11.96 9.87 -191.84 -1.89 -13.85 16 24 C 0.17 4.08 10.71 85.04 0.91 4.99 16 25 C 0.44 18.33 2.83 71.98 0.20 18.54 16 26 F -0.19 -7.48 16.93 44.97 0.76 -6.72 16 27 F -0.18 -7.97 16.89 44.97 0.76 -7.21 16 28 F -0.19 -7.84 15.83 44.97 0.71 -7.12 16 29 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 30 H 0.41 12.95 6.65 -92.71 -0.62 12.33 16 31 H 0.17 3.07 7.73 -2.91 -0.02 3.05 16 32 H 0.19 1.23 6.75 -2.91 -0.02 1.21 16 33 H 0.19 3.22 8.06 -2.91 -0.02 3.20 16 34 H 0.20 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.25 1.63 7.05 -2.91 -0.02 1.61 16 36 H 0.18 3.78 6.41 -2.91 -0.02 3.76 16 Total: -1.00 -65.00 331.44 5.37 -59.64 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.54 Total: 17.16 kcal Atomic # 6 Polarization: 28.60 SS G_CDS: 7.88 Total: 36.48 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -7.08 Total: -110.68 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.06 Total: -22.57 kcal Atomic # 9 Polarization: -23.28 SS G_CDS: 2.23 Total: -21.05 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 1.85 Total: 41.02 kcal Total: -65.00 5.37 -59.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363530461.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.102 kcal (2) G-P(sol) polarization free energy of solvation -65.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds