Wall clock time and date at job start Sat Apr 11 2020 05:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00486 * 2 1 4 4 H 1.48495 * 109.47518 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47175 * 300.00451 * 3 2 1 6 6 H 1.48498 * 109.47028 * 59.99834 * 3 2 1 7 7 C 1.37876 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00051 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00220 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47236 * 59.98858 * 9 7 2 11 11 N 1.46491 * 109.47610 * 180.02562 * 9 7 2 12 12 C 1.34771 * 120.00250 * 204.99723 * 11 9 7 13 13 O 1.21513 * 120.00256 * 359.97438 * 12 11 9 14 14 C 1.48164 * 120.00512 * 179.97438 * 12 11 9 15 15 C 1.39947 * 120.88826 * 359.97438 * 14 12 11 16 16 C 1.38043 * 119.13670 * 180.02562 * 15 14 12 17 17 N 1.31858 * 120.97841 * 359.97438 * 16 15 14 18 18 C 1.32224 * 121.97185 * 359.97438 * 17 16 15 19 19 N 1.39851 * 119.61793 * 180.02562 * 18 17 16 20 20 C 1.37166 * 126.49082 * 4.71348 * 19 18 17 21 21 C 1.34620 * 106.82834 * 179.84310 * 20 19 18 22 22 N 1.34144 * 108.21711 * 0.42261 * 21 20 19 23 23 C 1.30487 * 109.37501 * 359.73366 * 22 21 20 24 24 C 1.38903 * 120.75405 * 0.02840 * 18 17 16 25 25 C 1.53004 * 109.46556 * 299.99701 * 9 7 2 26 26 F 1.39900 * 109.47444 * 299.99979 * 25 9 7 27 27 F 1.39901 * 109.47195 * 60.00162 * 25 9 7 28 28 F 1.39904 * 109.46840 * 179.97438 * 25 9 7 29 29 H 0.97000 * 119.99365 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00280 * 24.99197 * 11 9 7 31 31 H 1.08007 * 120.43192 * 359.97438 * 15 14 12 32 32 H 1.07994 * 119.50770 * 180.02562 * 16 15 14 33 33 H 1.07999 * 126.58603 * 359.97438 * 20 19 18 34 34 H 1.08002 * 125.88958 * 180.15196 * 21 20 19 35 35 H 1.07994 * 125.72674 * 179.97438 * 23 22 21 36 36 H 1.07996 * 120.53075 * 179.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6245 -2.5571 -0.8895 11 7 2.2028 -3.6127 0.0018 12 6 1.8370 -4.8125 -0.4912 13 8 0.7174 -4.9708 -0.9363 14 6 2.7998 -5.9387 -0.4905 15 6 4.0940 -5.7771 0.0170 16 6 4.9618 -6.8505 -0.0007 17 7 4.5875 -8.0179 -0.4863 18 6 3.3750 -8.2167 -0.9749 19 7 3.0301 -9.4755 -1.4771 20 6 3.8051 -10.6068 -1.4451 21 6 3.0901 -11.5857 -2.0308 22 7 1.9143 -11.0706 -2.4203 23 6 1.8658 -9.8079 -2.0947 24 6 2.4401 -7.1896 -0.9951 25 6 0.3709 -2.5799 1.2496 26 9 1.1748 -2.5055 2.3921 27 9 -0.5381 -1.5165 1.2490 28 9 -0.3291 -3.7912 1.2493 29 1 -0.4849 0.8401 0.0004 30 1 3.0964 -3.4866 0.3573 31 1 4.4100 -4.8246 0.4164 32 1 5.9617 -6.7326 0.3898 33 1 4.7973 -10.6958 -1.0281 34 1 3.4099 -12.6081 -2.1677 35 1 1.0394 -9.1391 -2.2845 36 1 1.4510 -7.3559 -1.3954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363530719.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:54 Heat of formation + Delta-G solvation = -56.794570 kcal Electronic energy + Delta-G solvation = -29109.503775 eV Core-core repulsion = 24374.324366 eV Total energy + Delta-G solvation = -4735.179409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.50416 -46.16243 -45.75911 -42.56643 -40.61295 -38.89659 -35.02819 -34.52122 -33.15043 -32.60474 -30.47089 -29.49539 -28.66305 -25.09582 -24.66960 -24.36198 -22.32530 -21.44225 -21.01835 -20.28062 -19.19519 -17.59912 -17.14289 -17.01238 -16.79280 -16.52803 -16.09873 -15.98634 -15.57630 -15.22044 -14.93555 -14.56695 -14.29115 -14.15329 -14.06926 -13.76438 -13.63972 -13.28787 -13.08201 -12.68338 -12.55456 -12.47106 -12.32663 -12.10302 -11.95765 -11.33050 -11.06933 -10.99076 -10.96775 -10.57961 -10.40182 -10.30147 -10.19034 -9.82819 -9.67413 -9.09229 -8.88858 -8.71835 -8.55423 -6.37984 -4.63427 0.27637 0.51801 1.90046 2.14228 2.87028 2.97893 3.09082 3.15352 3.19081 3.29357 3.62908 3.94257 4.08145 4.30066 4.37102 4.41790 4.49331 4.58274 4.67850 4.79201 4.99401 5.15713 5.24849 5.30519 5.45026 5.64749 5.69912 5.72115 5.87422 6.01271 6.04098 6.43426 6.69394 6.84145 6.84708 7.25863 7.37309 7.47727 7.74194 7.96200 8.29869 8.49114 9.05254 10.53634 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.021573 B = 0.002844 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.588221 B = 9844.167373 C =10373.742673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.066 3.934 3 Si 0.917 3.083 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.556 4.556 8 H 0.080 0.920 9 C 0.244 3.756 10 H 0.089 0.911 11 N -0.697 5.697 12 C 0.546 3.454 13 O -0.517 6.517 14 C -0.045 4.045 15 C -0.150 4.150 16 C 0.132 3.868 17 N -0.488 5.488 18 C 0.338 3.662 19 N -0.409 5.409 20 C -0.027 4.027 21 C -0.032 4.032 22 N -0.479 5.479 23 C 0.197 3.803 24 C -0.124 4.124 25 C 0.417 3.583 26 F -0.208 7.208 27 F -0.134 7.134 28 F -0.218 7.218 29 H 0.270 0.730 30 H 0.400 0.600 31 H 0.152 0.848 32 H 0.175 0.825 33 H 0.182 0.818 34 H 0.176 0.824 35 H 0.214 0.786 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.558 -11.771 -0.010 15.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.098 0.902 9 C 0.139 3.861 10 H 0.107 0.893 11 N -0.347 5.347 12 C 0.330 3.670 13 O -0.393 6.393 14 C -0.057 4.057 15 C -0.172 4.172 16 C -0.026 4.026 17 N -0.201 5.201 18 C 0.110 3.890 19 N -0.092 5.092 20 C -0.157 4.157 21 C -0.177 4.177 22 N -0.196 5.196 23 C -0.084 4.084 24 C -0.147 4.147 25 C 0.361 3.639 26 F -0.190 7.190 27 F -0.115 7.115 28 F -0.200 7.200 29 H 0.080 0.920 30 H 0.235 0.765 31 H 0.170 0.830 32 H 0.192 0.808 33 H 0.199 0.801 34 H 0.193 0.807 35 H 0.231 0.769 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.510 -12.812 -0.686 15.396 hybrid contribution 0.779 2.024 0.977 2.378 sum 9.289 -10.788 0.290 14.240 Atomic orbital electron populations 1.70398 1.05902 1.27543 1.43139 1.25087 0.95187 1.00238 0.93853 0.86125 0.79758 0.81758 0.78021 1.19338 1.20466 1.20466 1.20880 0.93841 0.87871 1.56658 0.90234 1.19853 0.88610 0.85494 0.92106 0.89316 1.46001 1.17520 1.10169 1.60974 1.18055 0.86845 0.82671 0.79416 1.90810 1.20214 1.82678 1.45627 1.20456 0.94519 0.94226 0.96491 1.22503 0.93280 1.01605 0.99763 1.22554 0.99989 0.85964 0.94099 1.66836 1.15774 1.26132 1.11360 1.17999 0.90591 0.84384 0.95977 1.43127 1.15633 1.06878 1.43513 1.22912 0.99727 0.85400 1.07641 1.22404 0.91586 1.00067 1.03653 1.70354 1.21180 1.06443 1.21645 1.25487 0.90070 0.94166 0.98710 1.21650 1.00959 0.91231 1.00881 1.23108 0.80919 0.72915 0.87008 1.92996 1.74388 1.96178 1.55442 1.93418 1.68288 1.53670 1.96169 1.93077 1.81475 1.48438 1.96967 0.91959 0.76458 0.83020 0.80837 0.80120 0.80710 0.76926 0.82578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.81 9.50 55.43 0.53 -21.28 16 2 C 0.07 1.61 5.20 -17.82 -0.09 1.52 16 3 Si 0.92 18.99 29.54 -169.99 -5.02 13.97 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.56 -13.14 8.46 -34.44 -0.29 -13.43 16 8 H 0.08 1.75 7.74 -52.49 -0.41 1.34 16 9 C 0.24 5.60 2.21 -69.08 -0.15 5.44 16 10 H 0.09 2.28 7.58 -51.93 -0.39 1.89 16 11 N -0.70 -12.67 4.94 -55.78 -0.28 -12.94 16 12 C 0.55 9.65 7.33 -12.19 -0.09 9.56 16 13 O -0.52 -10.95 15.01 5.35 0.08 -10.87 16 14 C -0.05 -0.61 5.91 -104.67 -0.62 -1.23 16 15 C -0.15 -1.53 9.61 -39.01 -0.37 -1.91 16 16 C 0.13 1.20 11.17 -17.61 -0.20 1.00 16 17 N -0.49 -5.54 9.87 -12.34 -0.12 -5.66 16 18 C 0.34 4.13 7.50 -154.42 -1.16 2.97 16 19 N -0.41 -4.88 2.98 -63.85 -0.19 -5.07 16 20 C -0.03 -0.29 11.17 -16.45 -0.18 -0.47 16 21 C -0.03 -0.35 11.85 -17.82 -0.21 -0.56 16 22 N -0.48 -6.20 11.24 -14.46 -0.16 -6.36 16 23 C 0.20 2.31 11.89 -89.57 -1.07 1.25 16 24 C -0.12 -1.58 9.07 -38.83 -0.35 -1.94 16 25 C 0.42 10.04 2.81 37.16 0.10 10.14 16 26 F -0.21 -4.80 16.94 2.25 0.04 -4.76 16 27 F -0.13 -3.54 12.91 2.25 0.03 -3.51 16 28 F -0.22 -5.21 15.67 2.25 0.04 -5.18 16 29 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 30 H 0.40 5.97 6.68 -40.82 -0.27 5.70 16 31 H 0.15 1.20 6.53 -52.48 -0.34 0.86 16 32 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.18 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.21 1.92 7.07 -52.49 -0.37 1.55 16 36 H 0.16 1.90 6.46 -52.49 -0.34 1.56 16 LS Contribution 328.64 15.07 4.95 4.95 Total: -1.00 -31.00 328.64 -7.32 -38.32 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -2.53 Total: 6.05 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: -4.68 Total: 12.35 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.22 Total: -51.32 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 9 Polarization: -13.56 SS G_CDS: 0.10 Total: -13.45 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.00 -7.32 -38.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363530719.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.477 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds