Wall clock time and date at job start Sat Apr 11 2020 05:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86792 * 120.00155 * 2 1 4 4 H 1.48501 * 109.47212 * 269.99801 * 3 2 1 5 5 H 1.48498 * 109.47421 * 30.00113 * 3 2 1 6 6 H 1.48504 * 109.47342 * 150.00138 * 3 2 1 7 7 C 1.37881 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99396 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00447 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.46984 * 300.00326 * 9 7 2 11 11 N 1.46499 * 109.47278 * 179.97438 * 9 7 2 12 12 C 1.34777 * 119.99665 * 155.27952 * 11 9 7 13 13 O 1.21613 * 120.00251 * 359.72091 * 12 11 9 14 14 C 1.47286 * 119.99694 * 179.72406 * 12 11 9 15 15 C 1.37970 * 126.80913 * 359.68478 * 14 12 11 16 16 N 1.34157 * 107.88685 * 179.86977 * 15 14 12 17 17 H 0.96997 * 125.16493 * 180.14985 * 16 15 14 18 18 N 1.39782 * 109.67457 * 0.40510 * 16 15 14 19 19 C 1.31366 * 109.07494 * 359.74358 * 18 16 15 20 20 C 1.48299 * 126.50916 * 180.02562 * 19 18 16 21 21 C 1.39812 * 120.53713 * 325.00190 * 20 19 18 22 22 C 1.38401 * 118.30388 * 179.97438 * 21 20 19 23 23 C 1.38319 * 119.28821 * 359.97438 * 22 21 20 24 24 N 1.31887 * 121.03811 * 359.97438 * 23 22 21 25 25 C 1.31739 * 121.85933 * 359.72882 * 24 23 22 26 26 C 1.52999 * 109.46890 * 59.99907 * 9 7 2 27 27 F 1.39901 * 109.47182 * 180.02562 * 26 9 7 28 28 F 1.39911 * 109.47384 * 300.00028 * 26 9 7 29 29 F 1.39903 * 109.47505 * 60.00129 * 26 9 7 30 30 H 0.97000 * 120.00295 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99790 * 334.99665 * 11 9 7 32 32 H 1.07996 * 126.05764 * 359.97438 * 15 14 12 33 33 H 1.07999 * 120.84478 * 359.95450 * 21 20 19 34 34 H 1.08003 * 120.35169 * 180.02562 * 22 21 20 35 35 H 1.08002 * 119.48036 * 179.97438 * 23 22 21 36 36 H 1.07994 * 119.70511 * 180.26105 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 1 0.6246 -2.5563 0.8919 11 7 2.2029 -3.6127 0.0015 12 6 1.8353 -4.8137 0.4904 13 8 0.7150 -4.9715 0.9364 14 6 2.7904 -5.9348 0.4846 15 6 4.0860 -5.9146 0.0106 16 7 4.6108 -7.1357 0.1936 17 1 5.5122 -7.3984 -0.0495 18 7 3.6593 -7.9734 0.7825 19 6 2.5509 -7.2952 0.9756 20 6 1.2959 -7.8082 1.5765 21 6 0.8889 -9.1271 1.3536 22 6 -0.2898 -9.5576 1.9373 23 6 -1.0203 -8.6778 2.7155 24 7 -0.6104 -7.4392 2.9087 25 6 0.5073 -6.9861 2.3788 26 6 0.3709 -2.5810 -1.2471 27 9 -0.3291 -3.7923 -1.2458 28 9 -0.5383 -1.5176 -1.2475 29 9 1.1747 -2.5077 -2.3898 30 1 -0.4850 0.8400 0.0004 31 1 3.0965 -3.4868 -0.3544 32 1 4.5891 -5.0658 -0.4283 33 1 1.4791 -9.7928 0.7413 34 1 -0.6351 -10.5699 1.7874 35 1 -1.9408 -9.0104 3.1722 36 1 0.8122 -5.9666 2.5632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363568572.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:57 Heat of formation + Delta-G solvation = -57.095139 kcal Electronic energy + Delta-G solvation = -29853.619883 eV Core-core repulsion = 25118.427440 eV Total energy + Delta-G solvation = -4735.192443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.33540 -45.99183 -45.59892 -41.22770 -39.65296 -38.56345 -34.73678 -33.37784 -32.64343 -31.81648 -30.60681 -30.00426 -28.03585 -24.59837 -24.11440 -23.53731 -23.03808 -21.30554 -20.28923 -19.63458 -18.69409 -17.18511 -16.93968 -16.76551 -16.62625 -16.18539 -16.00119 -15.63760 -15.47457 -14.94461 -14.82949 -14.32223 -13.98193 -13.59093 -13.48922 -13.32929 -12.96237 -12.89507 -12.76380 -12.46928 -12.38713 -12.26706 -11.96738 -11.80935 -11.76408 -11.24402 -11.05807 -10.89657 -10.79125 -10.42185 -10.39660 -9.67724 -9.61061 -9.33849 -9.27322 -8.91154 -8.74316 -8.42340 -8.24559 -6.24791 -4.49421 0.90473 1.45347 1.52297 2.32020 2.55425 3.17322 3.23492 3.25833 3.73519 3.82302 4.03723 4.18402 4.25196 4.53723 4.58738 4.77680 4.91534 4.92425 5.03929 5.10779 5.23740 5.40318 5.48639 5.61748 5.85546 5.87700 5.98928 6.06936 6.21934 6.27826 6.35781 6.86485 6.93568 6.96725 7.14864 7.35289 7.45800 7.61470 8.20400 8.29458 8.47865 8.86871 9.18590 10.66600 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.015048 B = 0.003828 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.287061 B = 7312.252233 C = 8116.121560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.066 3.934 3 Si 0.914 3.086 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.247 3.753 10 H 0.089 0.911 11 N -0.706 5.706 12 C 0.581 3.419 13 O -0.529 6.529 14 C -0.267 4.267 15 C 0.106 3.894 16 N -0.466 5.466 17 H 0.443 0.557 18 N -0.286 5.286 19 C 0.174 3.826 20 C -0.081 4.081 21 C -0.047 4.047 22 C -0.192 4.192 23 C 0.107 3.893 24 N -0.487 5.487 25 C 0.172 3.828 26 C 0.416 3.584 27 F -0.216 7.216 28 F -0.137 7.137 29 F -0.211 7.211 30 H 0.268 0.732 31 H 0.395 0.605 32 H 0.191 0.809 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.153 0.847 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.607 -13.587 0.543 15.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.144 4.144 3 Si 0.741 3.259 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.590 4.590 8 H 0.095 0.905 9 C 0.142 3.858 10 H 0.106 0.894 11 N -0.355 5.355 12 C 0.367 3.633 13 O -0.407 6.407 14 C -0.282 4.282 15 C -0.043 4.043 16 N -0.172 5.172 17 H 0.287 0.713 18 N -0.107 5.107 19 C 0.005 3.995 20 C -0.085 4.085 21 C -0.074 4.074 22 C -0.212 4.212 23 C -0.050 4.050 24 N -0.195 5.195 25 C 0.014 3.986 26 C 0.360 3.640 27 F -0.198 7.198 28 F -0.118 7.118 29 F -0.193 7.193 30 H 0.079 0.921 31 H 0.228 0.772 32 H 0.208 0.792 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.171 0.829 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 6.669 -14.092 1.482 15.660 hybrid contribution 1.398 0.984 -1.573 2.323 sum 8.068 -13.107 -0.090 15.391 Atomic orbital electron populations 1.70399 1.05842 1.27400 1.43404 1.25073 0.95137 1.00084 0.94058 0.86228 0.79546 0.81766 0.78376 1.20281 1.20786 1.19515 1.20846 0.93698 0.88092 1.56367 0.90509 1.19739 0.88668 0.85581 0.91852 0.89389 1.45913 1.16970 1.10276 1.62295 1.17211 0.86356 0.81588 0.78096 1.90751 1.20608 1.82605 1.46700 1.21503 0.95443 0.95676 1.15599 1.23093 0.94049 0.89949 0.97239 1.45881 1.14404 1.07792 1.49076 0.71284 1.77277 0.98383 1.16329 1.18750 1.21561 0.91969 0.90337 0.95666 1.18696 0.93544 0.94801 1.01490 1.21567 0.95384 0.94116 0.96343 1.21965 0.96619 1.01581 1.00991 1.22917 0.98664 0.89262 0.94184 1.67865 1.14428 1.14954 1.22250 1.23553 0.87409 0.99432 0.88238 1.23142 0.80932 0.72862 0.87047 1.93082 1.81428 1.48339 1.96952 1.93408 1.68395 1.53814 1.96192 1.92982 1.74481 1.96203 1.55605 0.92079 0.77180 0.79200 0.84916 0.84849 0.82932 0.80460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.54 9.50 55.43 0.53 -22.01 16 2 C 0.07 1.66 5.20 -17.82 -0.09 1.57 16 3 Si 0.91 19.55 29.54 -169.99 -5.02 14.52 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.55 -13.51 8.46 -34.44 -0.29 -13.80 16 8 H 0.08 1.74 7.74 -52.49 -0.41 1.34 16 9 C 0.25 5.89 2.21 -69.09 -0.15 5.74 16 10 H 0.09 2.36 7.58 -51.93 -0.39 1.96 16 11 N -0.71 -13.52 4.98 -56.06 -0.28 -13.80 16 12 C 0.58 11.05 7.21 -12.58 -0.09 10.96 16 13 O -0.53 -11.73 11.05 5.27 0.06 -11.67 16 14 C -0.27 -4.09 6.27 -102.95 -0.65 -4.73 16 15 C 0.11 1.13 11.50 -16.63 -0.19 0.94 16 16 N -0.47 -4.50 7.20 30.81 0.22 -4.28 16 17 H 0.44 2.43 8.96 -182.84 -1.64 0.79 16 18 N -0.29 -3.81 12.64 34.58 0.44 -3.37 16 19 C 0.17 2.67 6.96 -80.56 -0.56 2.11 16 20 C -0.08 -1.28 5.74 -104.76 -0.60 -1.88 16 21 C -0.05 -0.62 9.92 -38.93 -0.39 -1.00 16 22 C -0.19 -2.22 10.10 -39.49 -0.40 -2.62 16 23 C 0.11 1.40 11.17 -17.50 -0.20 1.21 16 24 N -0.49 -8.20 10.35 -12.96 -0.13 -8.34 16 25 C 0.17 2.99 8.96 -17.18 -0.15 2.84 16 26 C 0.42 10.47 2.81 37.16 0.10 10.57 16 27 F -0.22 -5.47 15.65 2.25 0.04 -5.43 16 28 F -0.14 -3.75 12.91 2.25 0.03 -3.72 16 29 F -0.21 -5.08 16.94 2.25 0.04 -5.04 16 30 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.39 6.22 7.49 -40.82 -0.31 5.92 16 32 H 0.19 1.28 7.48 -52.49 -0.39 0.89 16 33 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 35 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.18 3.36 5.69 -52.49 -0.30 3.06 16 LS Contribution 326.03 15.07 4.91 4.91 Total: -1.00 -32.75 326.03 -6.67 -39.42 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -3.84 Total: 6.91 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: -3.66 Total: 11.89 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.77 Total: -51.80 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.06 Total: -11.67 kcal Atomic # 9 Polarization: -14.30 SS G_CDS: 0.10 Total: -14.19 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.75 -6.67 -39.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363568572.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.675 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds