Wall clock time and date at job start Sat Apr 11 2020 05:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00382 * 2 1 4 4 H 1.48495 * 109.47281 * 240.00297 * 3 2 1 5 5 H 1.48505 * 109.46567 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47074 * 119.99705 * 3 2 1 7 7 C 1.37878 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00207 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99750 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.47121 * 60.00046 * 9 7 2 11 11 N 1.46498 * 109.47418 * 179.97438 * 9 7 2 12 12 C 1.34777 * 120.00482 * 204.99679 * 11 9 7 13 13 O 1.21622 * 119.99821 * 0.02562 * 12 11 9 14 14 C 1.47287 * 119.99993 * 180.02562 * 12 11 9 15 15 C 1.37963 * 126.81137 * 0.02880 * 14 12 11 16 16 N 1.34150 * 107.88615 * 180.23055 * 15 14 12 17 17 H 0.97006 * 125.16413 * 179.70032 * 16 15 14 18 18 N 1.39776 * 109.67647 * 359.57302 * 16 15 14 19 19 C 1.31358 * 109.07886 * 0.43780 * 18 16 15 20 20 C 1.48298 * 126.51493 * 179.72883 * 19 18 16 21 21 C 1.39800 * 120.53467 * 325.02147 * 20 19 18 22 22 C 1.38408 * 118.30966 * 179.97438 * 21 20 19 23 23 C 1.38326 * 119.28422 * 0.02562 * 22 21 20 24 24 N 1.31894 * 121.03391 * 359.97438 * 23 22 21 25 25 C 1.31742 * 121.86002 * 359.72861 * 24 23 22 26 26 C 1.53005 * 109.47457 * 300.00345 * 9 7 2 27 27 F 1.39907 * 109.46640 * 300.00163 * 26 9 7 28 28 F 1.39900 * 109.46865 * 59.99520 * 26 9 7 29 29 F 1.39889 * 109.47339 * 179.97438 * 26 9 7 30 30 H 0.97001 * 119.99579 * 0.02562 * 1 2 3 31 31 H 0.97007 * 119.99848 * 25.00081 * 11 9 7 32 32 H 1.08002 * 126.05234 * 359.96112 * 15 14 12 33 33 H 1.07997 * 120.85360 * 359.95740 * 21 20 19 34 34 H 1.07991 * 120.36343 * 180.02562 * 22 21 20 35 35 H 1.07997 * 119.48520 * 179.97438 * 23 22 21 36 36 H 1.07998 * 119.70240 * 180.26849 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6240 -2.5566 -0.8903 11 7 2.2029 -3.6127 -0.0018 12 6 1.8364 -4.8121 -0.4952 13 8 0.7155 -4.9699 -0.9399 14 6 2.7933 -5.9317 -0.4959 15 6 4.0914 -5.9100 -0.0291 16 7 4.6178 -7.1293 -0.2183 17 1 5.5219 -7.3902 0.0171 18 7 3.6648 -7.9677 -0.8037 19 6 2.5550 -7.2905 -0.9920 20 6 1.2998 -7.8030 -1.5927 21 6 1.3392 -8.7441 -2.6258 22 6 0.1399 -9.1914 -3.1524 23 6 -1.0482 -8.6972 -2.6447 24 7 -1.0538 -7.8095 -1.6693 25 6 0.0618 -7.3588 -1.1327 26 6 0.3717 -2.5805 1.2490 27 9 1.1765 -2.5066 2.3910 28 9 -0.5373 -1.5170 1.2495 29 9 -0.3281 -3.7917 1.2487 30 1 -0.4849 0.8401 -0.0004 31 1 3.0971 -3.4868 0.3527 32 1 4.5959 -5.0605 0.4070 33 1 2.2814 -9.1125 -3.0037 34 1 0.1317 -9.9183 -3.9509 35 1 -1.9858 -9.0437 -3.0535 36 1 0.0164 -6.6350 -0.3324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363568585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:59 Heat of formation + Delta-G solvation = -57.002222 kcal Electronic energy + Delta-G solvation = -29878.587371 eV Core-core repulsion = 25143.398958 eV Total energy + Delta-G solvation = -4735.188414 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.33471 -45.99072 -45.59822 -41.22851 -39.65016 -38.56270 -34.73649 -33.37677 -32.64356 -31.81195 -30.60721 -30.00215 -28.03575 -24.59827 -24.11032 -23.53431 -23.03551 -21.30505 -20.28714 -19.63445 -18.69467 -17.18991 -16.93158 -16.77423 -16.61338 -16.19748 -15.97959 -15.61360 -15.48212 -14.96671 -14.80767 -14.28890 -14.00789 -13.66826 -13.57474 -13.17611 -12.95324 -12.91097 -12.70747 -12.49662 -12.38508 -12.26900 -11.96534 -11.80387 -11.77756 -11.26253 -11.05110 -10.88478 -10.79681 -10.42170 -10.38592 -9.69942 -9.61156 -9.32976 -9.25930 -8.90869 -8.73244 -8.43942 -8.24068 -6.24756 -4.49399 0.90476 1.45532 1.52298 2.32122 2.55514 3.18002 3.23130 3.24674 3.76124 3.79465 4.04154 4.18059 4.25631 4.53419 4.58378 4.78725 4.91418 4.92434 5.03829 5.11396 5.23785 5.40391 5.48688 5.61895 5.85383 5.87824 6.00393 6.06941 6.22236 6.27981 6.36792 6.87748 6.93686 6.96952 7.14897 7.35358 7.45729 7.61508 8.21475 8.29373 8.47585 8.86780 9.18524 10.66650 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.015006 B = 0.003841 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.490754 B = 7288.775785 C = 8134.588187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.066 3.934 3 Si 0.914 3.086 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.554 4.554 8 H 0.076 0.924 9 C 0.247 3.753 10 H 0.088 0.912 11 N -0.706 5.706 12 C 0.581 3.419 13 O -0.529 6.529 14 C -0.267 4.267 15 C 0.106 3.894 16 N -0.466 5.466 17 H 0.443 0.557 18 N -0.286 5.286 19 C 0.174 3.826 20 C -0.082 4.082 21 C -0.047 4.047 22 C -0.192 4.192 23 C 0.107 3.893 24 N -0.486 5.486 25 C 0.172 3.828 26 C 0.417 3.583 27 F -0.210 7.210 28 F -0.137 7.137 29 F -0.216 7.216 30 H 0.269 0.731 31 H 0.395 0.605 32 H 0.191 0.809 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.153 0.847 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.031 -13.190 -1.782 15.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.143 4.143 3 Si 0.741 3.259 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.591 4.591 8 H 0.094 0.906 9 C 0.142 3.858 10 H 0.105 0.895 11 N -0.354 5.354 12 C 0.368 3.632 13 O -0.407 6.407 14 C -0.282 4.282 15 C -0.043 4.043 16 N -0.172 5.172 17 H 0.287 0.713 18 N -0.107 5.107 19 C 0.005 3.995 20 C -0.086 4.086 21 C -0.074 4.074 22 C -0.212 4.212 23 C -0.050 4.050 24 N -0.195 5.195 25 C 0.014 3.986 26 C 0.361 3.639 27 F -0.192 7.192 28 F -0.118 7.118 29 F -0.198 7.198 30 H 0.080 0.920 31 H 0.228 0.772 32 H 0.208 0.792 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.171 0.829 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 6.795 -13.940 -1.892 15.623 hybrid contribution 1.840 1.339 0.360 2.304 sum 8.635 -12.601 -1.532 15.352 Atomic orbital electron populations 1.70387 1.05833 1.27511 1.43308 1.25070 0.95138 1.00063 0.94060 0.86292 0.79361 0.81459 0.78833 1.19828 1.20863 1.19868 1.20806 0.93658 0.88127 1.56484 0.90584 1.19731 0.88696 0.85560 0.91858 0.89467 1.45911 1.16984 1.10427 1.62121 1.17213 0.86356 0.81677 0.77999 1.90751 1.20619 1.82286 1.47050 1.21503 0.95548 0.95667 1.15528 1.23090 0.94069 0.89955 0.97208 1.45880 1.14145 1.07872 1.49258 0.71281 1.77272 0.98406 1.16124 1.18936 1.21561 0.91933 0.90272 0.95758 1.18698 0.91093 0.99910 0.98938 1.21564 0.98891 0.93404 0.93537 1.21966 0.93217 1.03325 1.02715 1.22933 0.97943 0.92068 0.92093 1.67885 1.30867 1.10539 1.10166 1.23614 0.85531 0.92532 0.96937 1.23110 0.80887 0.72876 0.87025 1.92986 1.74416 1.96199 1.55629 1.93405 1.68386 1.53815 1.96189 1.93072 1.81421 1.48336 1.96955 0.92016 0.77181 0.79196 0.84915 0.84857 0.82939 0.80316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.55 9.50 55.43 0.53 -22.02 16 2 C 0.07 1.67 5.20 -17.82 -0.09 1.58 16 3 Si 0.91 19.56 29.54 -169.99 -5.02 14.54 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.55 -13.56 8.46 -34.44 -0.29 -13.85 16 8 H 0.08 1.73 7.74 -52.49 -0.41 1.32 16 9 C 0.25 5.89 2.21 -69.08 -0.15 5.74 16 10 H 0.09 2.35 7.58 -51.92 -0.39 1.96 16 11 N -0.71 -13.52 4.98 -56.05 -0.28 -13.80 16 12 C 0.58 11.06 7.22 -12.58 -0.09 10.97 16 13 O -0.53 -11.75 11.05 5.26 0.06 -11.69 16 14 C -0.27 -4.09 6.27 -102.95 -0.65 -4.74 16 15 C 0.11 1.13 11.50 -16.64 -0.19 0.94 16 16 N -0.47 -4.50 7.20 30.81 0.22 -4.28 16 17 H 0.44 2.43 8.96 -182.84 -1.64 0.79 16 18 N -0.29 -3.81 12.64 34.58 0.44 -3.37 16 19 C 0.17 2.67 6.96 -80.56 -0.56 2.11 16 20 C -0.08 -1.30 5.74 -104.77 -0.60 -1.90 16 21 C -0.05 -0.61 9.92 -38.94 -0.39 -1.00 16 22 C -0.19 -2.22 10.10 -39.49 -0.40 -2.61 16 23 C 0.11 1.41 11.17 -17.49 -0.20 1.21 16 24 N -0.49 -8.30 10.35 -12.96 -0.13 -8.43 16 25 C 0.17 3.05 8.96 -17.18 -0.15 2.89 16 26 C 0.42 10.39 2.81 37.16 0.10 10.49 16 27 F -0.21 -5.01 16.94 2.25 0.04 -4.98 16 28 F -0.14 -3.73 12.91 2.25 0.03 -3.70 16 29 F -0.22 -5.33 15.68 2.25 0.04 -5.30 16 30 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.39 6.22 7.49 -40.82 -0.31 5.92 16 32 H 0.19 1.28 7.48 -52.49 -0.39 0.89 16 33 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.15 1.50 8.06 -52.49 -0.42 1.07 16 36 H 0.18 3.54 5.68 -52.49 -0.30 3.24 16 LS Contribution 326.04 15.07 4.91 4.91 Total: -1.00 -32.54 326.04 -6.67 -39.21 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -3.84 Total: 7.07 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: -3.66 Total: 11.83 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.77 Total: -51.90 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.06 Total: -11.69 kcal Atomic # 9 Polarization: -14.07 SS G_CDS: 0.10 Total: -13.97 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.54 -6.67 -39.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363568585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.797 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds