Wall clock time and date at job start Sat Apr 11 2020 05:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00382 * 2 1 4 4 H 1.48495 * 109.47281 * 240.00297 * 3 2 1 5 5 H 1.48505 * 109.46567 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47074 * 119.99705 * 3 2 1 7 7 C 1.37878 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00207 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99750 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.47121 * 60.00046 * 9 7 2 11 11 N 1.46498 * 109.47418 * 179.97438 * 9 7 2 12 12 C 1.34777 * 120.00482 * 204.99679 * 11 9 7 13 13 O 1.21622 * 119.99821 * 0.02562 * 12 11 9 14 14 C 1.47287 * 119.99993 * 180.02562 * 12 11 9 15 15 C 1.37963 * 126.81137 * 0.02880 * 14 12 11 16 16 N 1.34150 * 107.88615 * 180.23055 * 15 14 12 17 17 H 0.97006 * 125.16413 * 179.70032 * 16 15 14 18 18 N 1.39776 * 109.67647 * 359.57302 * 16 15 14 19 19 C 1.31358 * 109.07886 * 0.43780 * 18 16 15 20 20 C 1.48298 * 126.51493 * 179.72883 * 19 18 16 21 21 C 1.39800 * 120.53467 * 325.02147 * 20 19 18 22 22 C 1.38408 * 118.30966 * 179.97438 * 21 20 19 23 23 C 1.38326 * 119.28422 * 0.02562 * 22 21 20 24 24 N 1.31894 * 121.03391 * 359.97438 * 23 22 21 25 25 C 1.31742 * 121.86002 * 359.72861 * 24 23 22 26 26 C 1.53005 * 109.47457 * 300.00345 * 9 7 2 27 27 F 1.39907 * 109.46640 * 300.00163 * 26 9 7 28 28 F 1.39900 * 109.46865 * 59.99520 * 26 9 7 29 29 F 1.39889 * 109.47339 * 179.97438 * 26 9 7 30 30 H 0.97001 * 119.99579 * 0.02562 * 1 2 3 31 31 H 0.97007 * 119.99848 * 25.00081 * 11 9 7 32 32 H 1.08002 * 126.05234 * 359.96112 * 15 14 12 33 33 H 1.07997 * 120.85360 * 359.95740 * 21 20 19 34 34 H 1.07991 * 120.36343 * 180.02562 * 22 21 20 35 35 H 1.07997 * 119.48520 * 179.97438 * 23 22 21 36 36 H 1.07998 * 119.70240 * 180.26849 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6240 -2.5566 -0.8903 11 7 2.2029 -3.6127 -0.0018 12 6 1.8364 -4.8121 -0.4952 13 8 0.7155 -4.9699 -0.9399 14 6 2.7933 -5.9317 -0.4959 15 6 4.0914 -5.9100 -0.0291 16 7 4.6178 -7.1293 -0.2183 17 1 5.5219 -7.3902 0.0171 18 7 3.6648 -7.9677 -0.8037 19 6 2.5550 -7.2905 -0.9920 20 6 1.2998 -7.8030 -1.5927 21 6 1.3392 -8.7441 -2.6258 22 6 0.1399 -9.1914 -3.1524 23 6 -1.0482 -8.6972 -2.6447 24 7 -1.0538 -7.8095 -1.6693 25 6 0.0618 -7.3588 -1.1327 26 6 0.3717 -2.5805 1.2490 27 9 1.1765 -2.5066 2.3910 28 9 -0.5373 -1.5170 1.2495 29 9 -0.3281 -3.7917 1.2487 30 1 -0.4849 0.8401 -0.0004 31 1 3.0971 -3.4868 0.3527 32 1 4.5959 -5.0605 0.4070 33 1 2.2814 -9.1125 -3.0037 34 1 0.1317 -9.9183 -3.9509 35 1 -1.9858 -9.0437 -3.0535 36 1 0.0164 -6.6350 -0.3324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363568585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:58 Heat of formation + Delta-G solvation = -80.699831 kcal Electronic energy + Delta-G solvation = -29879.614977 eV Core-core repulsion = 25143.398958 eV Total energy + Delta-G solvation = -4736.216019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.35643 -47.99099 -47.67182 -42.26611 -40.72647 -40.05723 -36.45401 -34.57614 -34.30749 -32.86222 -31.88431 -31.06804 -29.66063 -26.54907 -25.17841 -24.71215 -24.35186 -22.92403 -21.43551 -21.02314 -19.88124 -18.95970 -18.72436 -18.60355 -17.96486 -17.76262 -17.22613 -17.06076 -16.75216 -16.51786 -16.01961 -15.74989 -15.26510 -14.94709 -14.87382 -14.76571 -14.64642 -14.43385 -14.38422 -14.24303 -14.01968 -13.96361 -13.90562 -13.68975 -13.04101 -12.79477 -12.70933 -12.56840 -12.22248 -12.08368 -11.55708 -11.42728 -10.88385 -10.63880 -10.56144 -10.38435 -10.08893 -9.86178 -9.48995 -8.16682 -6.47622 -0.17594 0.38896 0.52832 1.19145 1.49601 1.51937 1.60101 1.71286 2.24713 2.35352 2.47933 2.65115 2.94138 2.99545 3.19990 3.57454 3.74231 3.83112 3.92286 3.99466 4.05019 4.12581 4.14101 4.25894 4.41912 4.46762 4.64135 4.91439 4.98652 5.06413 5.23749 5.27567 5.47742 5.60469 5.69459 5.81095 6.19836 6.39950 6.56959 6.83398 7.10416 7.21915 7.45888 8.75699 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.015006 B = 0.003841 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.490754 B = 7288.775785 C = 8134.588187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.014 3.986 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.559 4.559 8 H 0.097 0.903 9 C 0.256 3.744 10 H 0.045 0.955 11 N -0.699 5.699 12 C 0.578 3.422 13 O -0.569 6.569 14 C -0.311 4.311 15 C 0.147 3.853 16 N -0.440 5.440 17 H 0.465 0.535 18 N -0.292 5.292 19 C 0.159 3.841 20 C -0.096 4.096 21 C -0.049 4.049 22 C -0.173 4.173 23 C 0.096 3.904 24 N -0.524 5.524 25 C 0.144 3.856 26 C 0.413 3.587 27 F -0.203 7.203 28 F -0.153 7.153 29 F -0.219 7.219 30 H 0.267 0.733 31 H 0.412 0.588 32 H 0.237 0.763 33 H 0.156 0.844 34 H 0.179 0.821 35 H 0.185 0.815 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.371 -14.248 -2.345 18.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.191 4.191 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.596 4.596 8 H 0.115 0.885 9 C 0.149 3.851 10 H 0.063 0.937 11 N -0.349 5.349 12 C 0.367 3.633 13 O -0.450 6.450 14 C -0.326 4.326 15 C -0.005 4.005 16 N -0.148 5.148 17 H 0.314 0.686 18 N -0.114 5.114 19 C -0.010 4.010 20 C -0.101 4.101 21 C -0.076 4.076 22 C -0.192 4.192 23 C -0.061 4.061 24 N -0.233 5.233 25 C -0.014 4.014 26 C 0.357 3.643 27 F -0.185 7.185 28 F -0.134 7.134 29 F -0.201 7.201 30 H 0.077 0.923 31 H 0.249 0.751 32 H 0.253 0.747 33 H 0.174 0.826 34 H 0.196 0.804 35 H 0.202 0.798 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.214 -15.049 -2.440 18.351 hybrid contribution 0.822 1.531 0.524 1.815 sum 11.036 -13.518 -1.916 17.556 Atomic orbital electron populations 1.70544 1.07587 1.28088 1.44769 1.26007 0.95822 1.03726 0.93582 0.85232 0.77971 0.76838 0.79398 1.18684 1.21451 1.18823 1.21205 0.94647 0.88140 1.55567 0.88530 1.19262 0.88895 0.87366 0.89574 0.93700 1.45664 1.17002 1.09525 1.62749 1.17745 0.86540 0.82163 0.76837 1.90748 1.22688 1.82915 1.48606 1.21218 0.97015 0.94724 1.19657 1.23611 0.92100 0.90938 0.93873 1.45929 1.14549 1.07127 1.47164 0.68561 1.77218 0.98280 1.16542 1.19311 1.21601 0.92392 0.90549 0.96421 1.18824 0.90646 1.00682 0.99901 1.21908 1.00582 0.92547 0.92592 1.22428 0.91799 1.02589 1.02410 1.23537 1.00267 0.91156 0.91162 1.67763 1.31254 1.12271 1.12013 1.23131 0.87016 0.93607 0.97597 1.23327 0.80860 0.72317 0.87786 1.92982 1.74060 1.96152 1.55258 1.93372 1.69075 1.54640 1.96324 1.93067 1.81598 1.48435 1.97010 0.92326 0.75074 0.74702 0.82622 0.80381 0.79784 0.83797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.49 9.50 21.45 0.20 -48.29 16 2 C 0.01 0.70 5.20 84.66 0.44 1.14 16 3 Si 0.98 39.61 29.54 68.60 2.03 41.63 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.29 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 7 C -0.56 -27.25 8.46 25.60 0.22 -27.03 16 8 H 0.10 4.20 7.74 -2.91 -0.02 4.17 16 9 C 0.26 12.59 2.21 44.25 0.10 12.68 16 10 H 0.05 2.59 7.58 -2.38 -0.02 2.57 16 11 N -0.70 -26.92 4.98 -449.50 -2.24 -29.16 16 12 C 0.58 22.71 7.22 86.62 0.63 23.34 16 13 O -0.57 -27.15 11.05 -4.10 -0.05 -27.20 16 14 C -0.31 -9.35 6.27 -18.78 -0.12 -9.47 16 15 C 0.15 2.64 11.50 84.27 0.97 3.61 16 16 N -0.44 -6.91 7.20 -56.43 -0.41 -7.32 16 17 H 0.46 2.99 8.96 -213.52 -1.91 1.08 16 18 N -0.29 -7.15 12.64 -44.52 -0.56 -7.72 16 19 C 0.16 4.83 6.96 44.08 0.31 5.14 16 20 C -0.10 -3.10 5.74 -19.96 -0.11 -3.22 16 21 C -0.05 -1.22 9.92 22.69 0.23 -1.00 16 22 C -0.17 -3.59 10.10 22.33 0.23 -3.37 16 23 C 0.10 2.45 11.17 84.70 0.95 3.40 16 24 N -0.52 -18.81 10.35 -194.92 -2.02 -20.83 16 25 C 0.14 5.48 8.96 84.97 0.76 6.25 16 26 C 0.41 21.28 2.81 71.98 0.20 21.48 16 27 F -0.20 -9.71 16.94 44.97 0.76 -8.95 16 28 F -0.15 -8.67 12.91 44.97 0.58 -8.09 16 29 F -0.22 -11.42 15.68 44.97 0.70 -10.71 16 30 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 31 H 0.41 12.32 7.49 -92.70 -0.69 11.63 16 32 H 0.24 1.94 7.48 -2.91 -0.02 1.92 16 33 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 34 H 0.18 2.06 8.06 -2.92 -0.02 2.03 16 35 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.14 6.37 5.68 -2.91 -0.02 6.35 16 Total: -1.00 -76.50 326.04 2.39 -74.11 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -1.41 Total: 19.55 kcal Atomic # 6 Polarization: 28.18 SS G_CDS: 4.78 Total: 32.96 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -5.02 Total: -113.31 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.05 Total: -27.20 kcal Atomic # 9 Polarization: -29.79 SS G_CDS: 2.05 Total: -27.75 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.63 kcal Total: -76.50 2.39 -74.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363568585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.587 kcal (2) G-P(sol) polarization free energy of solvation -76.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds