Wall clock time and date at job start Sat Apr 11 2020 05:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 11 11 N 1.46499 * 109.47260 * 180.27562 * 9 7 2 12 12 C 1.34776 * 120.00348 * 155.00133 * 11 9 7 13 13 O 1.21574 * 119.99789 * 0.02562 * 12 11 9 14 14 C 1.47713 * 120.00450 * 180.02562 * 12 11 9 15 15 C 1.39706 * 120.02490 * 359.71927 * 14 12 11 16 16 C 1.37664 * 119.97742 * 179.81380 * 15 14 12 17 17 C 1.39501 * 120.02112 * 0.44437 * 16 15 14 18 18 C 1.48291 * 119.97087 * 179.76315 * 17 16 15 19 19 N 1.34022 * 125.65900 * 0.02562 * 18 17 16 20 20 C 1.30635 * 109.78468 * 179.97438 * 19 18 17 21 21 N 1.34570 * 108.31044 * 359.97438 * 20 19 18 22 22 H 0.97000 * 126.74259 * 180.02562 * 21 20 19 23 23 N 1.31553 * 125.65344 * 179.71495 * 18 17 16 24 24 C 1.39496 * 120.05366 * 359.79246 * 17 16 15 25 25 C 1.37663 * 120.02168 * 359.97438 * 24 17 16 26 26 C 1.53005 * 109.47000 * 60.28391 * 9 7 2 27 27 F 1.39897 * 109.47542 * 59.99523 * 26 9 7 28 28 F 1.39898 * 109.46978 * 179.97438 * 26 9 7 29 29 F 1.39909 * 109.46562 * 299.99500 * 26 9 7 30 30 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99954 * 335.01235 * 11 9 7 32 32 H 1.08005 * 120.01255 * 0.02562 * 15 14 12 33 33 H 1.07995 * 119.99117 * 180.21224 * 16 15 14 34 34 H 1.07997 * 125.84279 * 179.97438 * 20 19 18 35 35 H 1.07993 * 119.98928 * 179.97438 * 24 17 16 36 36 H 1.08002 * 120.01018 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6245 -2.5529 0.8956 11 7 2.2032 -3.6125 0.0102 12 6 1.8372 -4.8100 0.5088 13 8 0.7168 -4.9663 0.9542 14 6 2.7973 -5.9326 0.5142 15 6 4.0830 -5.7553 -0.0028 16 6 4.9782 -6.8011 0.0062 17 6 4.5989 -8.0401 0.5229 18 6 5.5624 -9.1673 0.5272 19 7 6.8200 -9.1219 0.0662 20 6 7.3905 -10.2867 0.2224 21 7 6.5020 -11.1192 0.7955 22 1 6.6464 -12.0490 1.0312 23 7 5.3263 -10.3761 0.9895 24 6 3.3138 -8.2197 1.0349 25 6 2.4185 -7.1740 1.0312 26 6 0.3715 -2.5858 -1.2435 27 9 1.1757 -2.5167 -2.3862 28 9 -0.3275 -3.7976 -1.2383 29 9 -0.5377 -1.5224 -1.2481 30 1 -0.4850 0.8400 0.0004 31 1 3.0970 -3.4880 -0.3453 32 1 4.3756 -4.7972 -0.4063 33 1 5.9732 -6.6633 -0.3903 34 1 8.4021 -10.5384 -0.0600 35 1 3.0211 -9.1795 1.4342 36 1 1.4235 -7.3134 1.4273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363634206.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:01 Heat of formation + Delta-G solvation = -56.159962 kcal Electronic energy + Delta-G solvation = -28706.359797 eV Core-core repulsion = 23971.207907 eV Total energy + Delta-G solvation = -4735.151890 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.34250 -45.99618 -45.60679 -42.38465 -39.79361 -38.01849 -34.73851 -33.46775 -32.68944 -32.11567 -30.94406 -30.37733 -28.23167 -24.83490 -24.48983 -23.42851 -22.06329 -21.76071 -20.78930 -19.81145 -18.81966 -18.15654 -16.94584 -16.75584 -16.62234 -16.08773 -15.86671 -15.80883 -15.30517 -15.04249 -14.76542 -14.34274 -14.15898 -13.80990 -13.51108 -13.11159 -12.92068 -12.67489 -12.54128 -12.48602 -12.39268 -12.27246 -12.06305 -11.98314 -11.81497 -11.19530 -11.12750 -10.87971 -10.84266 -10.69194 -10.42801 -10.41372 -10.30810 -9.65986 -9.37537 -9.02267 -8.74749 -8.65507 -8.27550 -6.24565 -4.48687 0.46698 1.37744 1.41442 2.25135 2.54628 3.18147 3.25573 3.29013 3.35330 3.63042 3.73786 4.06015 4.21055 4.24318 4.55291 4.57579 4.87822 4.92878 4.95813 5.11463 5.33440 5.49233 5.61013 5.77597 5.82954 5.87187 5.88654 6.02473 6.20127 6.32383 6.33267 6.42101 6.63531 6.78687 6.92445 7.12699 7.45476 7.62051 7.66194 8.26587 8.48659 8.80956 9.19356 10.67348 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.020966 B = 0.002623 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.187888 B =10670.517213 C =11355.230533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.552 4.552 8 H 0.079 0.921 9 C 0.244 3.756 10 H 0.087 0.913 11 N -0.704 5.704 12 C 0.545 3.455 13 O -0.529 6.529 14 C -0.103 4.103 15 C -0.092 4.092 16 C -0.081 4.081 17 C -0.008 4.008 18 C 0.273 3.727 19 N -0.533 5.533 20 C 0.264 3.736 21 N -0.486 5.486 22 H 0.443 0.557 23 N -0.304 5.304 24 C -0.092 4.092 25 C -0.067 4.067 26 C 0.417 3.583 27 F -0.209 7.209 28 F -0.217 7.217 29 F -0.136 7.136 30 H 0.268 0.732 31 H 0.399 0.601 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.225 0.775 35 H 0.135 0.865 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.919 -17.733 0.413 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.589 4.589 8 H 0.097 0.903 9 C 0.139 3.861 10 H 0.105 0.895 11 N -0.354 5.354 12 C 0.331 3.669 13 O -0.407 6.407 14 C -0.107 4.107 15 C -0.110 4.110 16 C -0.101 4.101 17 C -0.011 4.011 18 C -0.006 4.006 19 N -0.260 5.260 20 C -0.035 4.035 21 N -0.204 5.204 22 H 0.289 0.711 23 N -0.133 5.133 24 C -0.112 4.112 25 C -0.086 4.086 26 C 0.361 3.639 27 F -0.191 7.191 28 F -0.199 7.199 29 F -0.118 7.118 30 H 0.079 0.921 31 H 0.234 0.766 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.241 0.759 35 H 0.153 0.847 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 12.394 -17.604 0.866 21.547 hybrid contribution 1.115 0.078 -0.446 1.203 sum 13.509 -17.526 0.420 22.132 Atomic orbital electron populations 1.70403 1.05872 1.27322 1.43646 1.25085 0.95159 1.00157 0.93991 0.86150 0.79836 0.81920 0.77883 1.19338 1.20567 1.20563 1.20911 0.93846 0.88017 1.56148 0.90308 1.19776 0.88733 0.85722 0.91899 0.89522 1.46024 1.17288 1.10600 1.61450 1.18270 0.87132 0.82804 0.78688 1.90780 1.20684 1.82926 1.46277 1.20337 0.94534 0.95019 1.00799 1.21347 0.92336 0.99384 0.97959 1.21089 1.00231 0.90974 0.97807 1.17583 0.91421 0.90155 1.01898 1.22378 0.91036 0.91664 0.95514 1.70536 1.07141 1.22904 1.25443 1.26126 0.97862 0.85741 0.93763 1.48147 1.09777 1.14375 1.48120 0.71146 1.78272 1.04361 1.05238 1.25437 1.21105 0.91847 0.99536 0.98703 1.21204 1.00139 0.90812 0.96422 1.23100 0.80884 0.72837 0.87090 1.92989 1.74404 1.96208 1.55466 1.93072 1.81503 1.48372 1.96957 1.93406 1.68352 1.53779 1.96216 0.92131 0.76596 0.84596 0.84182 0.75867 0.84739 0.83936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.89 9.51 55.43 0.53 -22.36 16 2 C 0.06 1.68 5.20 -17.82 -0.09 1.58 16 3 Si 0.92 19.94 29.54 -169.99 -5.02 14.92 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.55 -13.94 8.46 -34.44 -0.29 -14.23 16 8 H 0.08 1.87 7.74 -52.49 -0.41 1.46 16 9 C 0.24 6.03 2.21 -69.08 -0.15 5.88 16 10 H 0.09 2.39 7.58 -51.93 -0.39 2.00 16 11 N -0.70 -14.39 4.93 -55.92 -0.28 -14.67 16 12 C 0.55 10.94 7.30 -12.39 -0.09 10.85 16 13 O -0.53 -12.42 14.91 5.30 0.08 -12.34 16 14 C -0.10 -1.64 5.88 -104.93 -0.62 -2.25 16 15 C -0.09 -1.22 9.52 -39.24 -0.37 -1.59 16 16 C -0.08 -0.99 9.67 -39.32 -0.38 -1.37 16 17 C -0.01 -0.10 5.88 -104.82 -0.62 -0.71 16 18 C 0.27 3.34 7.77 -156.59 -1.22 2.12 16 19 N -0.53 -5.71 10.81 -12.39 -0.13 -5.84 16 20 C 0.26 1.64 13.11 -90.69 -1.19 0.45 16 21 N -0.49 -3.16 7.44 29.52 0.22 -2.94 16 22 H 0.44 1.07 8.96 -182.34 -1.63 -0.56 16 23 N -0.30 -3.39 12.42 32.09 0.40 -2.99 16 24 C -0.09 -1.17 9.66 -39.32 -0.38 -1.55 16 25 C -0.07 -0.97 9.58 -39.24 -0.38 -1.34 16 26 C 0.42 10.71 2.81 37.16 0.10 10.81 16 27 F -0.21 -5.14 16.94 2.25 0.04 -5.11 16 28 F -0.22 -5.55 15.67 2.25 0.04 -5.52 16 29 F -0.14 -3.78 12.93 2.25 0.03 -3.75 16 30 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.40 6.96 6.56 -40.82 -0.27 6.69 16 32 H 0.14 1.57 6.39 -52.48 -0.34 1.24 16 33 H 0.14 1.52 7.82 -52.49 -0.41 1.11 16 34 H 0.23 0.16 8.06 -52.49 -0.42 -0.26 16 35 H 0.13 1.51 7.82 -52.49 -0.41 1.10 16 36 H 0.14 2.04 7.64 -52.49 -0.40 1.64 16 LS Contribution 330.33 15.07 4.98 4.98 Total: -1.00 -34.03 330.33 -8.61 -42.64 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -3.82 Total: 4.32 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: -5.67 Total: 8.66 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.74 Total: -48.80 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.08 Total: -12.34 kcal Atomic # 9 Polarization: -14.47 SS G_CDS: 0.10 Total: -14.37 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.03 -8.61 -42.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363634206.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.518 kcal (2) G-P(sol) polarization free energy of solvation -34.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds