Wall clock time and date at job start Sat Apr 11 2020 05:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86796 * 119.99854 * 2 1 4 4 H 1.48499 * 109.47245 * 269.99908 * 3 2 1 5 5 H 1.48504 * 109.47436 * 30.00325 * 3 2 1 6 6 H 1.48497 * 109.47213 * 150.00027 * 3 2 1 7 7 C 1.39941 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00431 * 186.84493 * 7 2 1 9 9 C 1.41400 * 119.99708 * 6.85077 * 7 2 1 10 10 C 1.40733 * 120.24721 * 33.06533 * 9 7 2 11 11 C 1.37595 * 119.74237 * 180.27903 * 10 9 7 12 12 C 1.38661 * 120.24967 * 359.69922 * 11 10 9 13 13 C 1.38611 * 120.50331 * 0.02562 * 12 11 10 14 14 C 1.37647 * 120.24359 * 359.97438 * 13 12 11 15 15 S 1.76201 * 120.12429 * 180.02562 * 14 13 12 16 16 O 1.42107 * 106.40181 * 359.71598 * 15 14 13 17 17 O 1.42092 * 106.40286 * 226.79454 * 15 14 13 18 18 N 1.65602 * 107.21745 * 113.25203 * 15 14 13 19 19 C 1.46498 * 120.00042 * 291.49035 * 18 15 14 20 20 C 1.50706 * 110.80098 * 60.74497 * 19 18 15 21 21 N 1.34769 * 120.00114 * 39.38239 * 20 19 18 22 22 O 1.21287 * 119.99877 * 219.37946 * 20 19 18 23 23 C 1.54806 * 110.90983 * 297.11898 * 19 18 15 24 24 C 1.54105 * 104.18308 * 262.68044 * 23 19 18 25 25 O 1.43743 * 107.42138 * 1.95502 * 24 23 19 26 26 C 1.44576 * 106.86987 * 333.66930 * 25 24 23 27 27 H 0.97005 * 119.99857 * 0.02562 * 1 2 3 28 28 H 1.07992 * 120.12719 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.87452 * 179.72711 * 11 10 9 30 30 H 1.08006 * 119.74818 * 180.02562 * 12 11 10 31 31 H 1.07994 * 119.87993 * 179.97438 * 13 12 11 32 32 H 0.96995 * 119.99636 * 111.49392 * 18 15 14 33 33 H 0.97006 * 120.00203 * 5.55191 * 21 20 19 34 34 H 0.97002 * 120.00074 * 185.55197 * 21 20 19 35 35 H 1.08999 * 110.49132 * 144.01122 * 23 19 18 36 36 H 1.08997 * 110.49028 * 21.35733 * 23 19 18 37 37 H 1.09004 * 109.87768 * 121.45227 * 24 23 19 38 38 H 1.09003 * 109.88035 * 242.45384 * 24 23 19 39 39 H 1.09003 * 110.50652 * 281.37737 * 26 25 24 40 40 H 1.08999 * 110.63646 * 158.44675 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0822 -1.2153 0.1120 9 6 1.3085 -2.4321 -0.1450 10 6 0.1472 -2.4934 -0.9375 11 6 -0.5286 -3.6849 -1.0673 12 6 -0.0659 -4.8238 -0.4259 13 6 1.0800 -4.7765 0.3526 14 6 1.7720 -3.5954 0.4965 15 16 3.2287 -3.5389 1.4863 16 8 3.4182 -4.8516 1.9966 17 8 3.1054 -2.3925 2.3167 18 7 4.5016 -3.2446 0.4688 19 6 4.9208 -4.2658 -0.4943 20 6 3.8029 -4.5897 -1.4517 21 7 3.0115 -3.6051 -1.9214 22 8 3.6154 -5.7364 -1.7994 23 6 5.4130 -5.5413 0.2320 24 6 6.9463 -5.3900 0.2635 25 8 7.2666 -4.1267 -0.3429 26 6 6.1920 -3.8164 -1.2589 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2145 -1.6077 -1.4385 29 1 -1.4226 -3.7333 -1.6714 30 1 -0.6025 -5.7550 -0.5337 31 1 1.4311 -5.6696 0.8480 32 1 4.9696 -2.3961 0.5105 33 1 3.2100 -2.6798 -1.7081 34 1 2.2434 -3.8217 -2.4728 35 1 5.1291 -6.4326 -0.3276 36 1 5.0128 -5.5820 1.2450 37 1 7.2992 -5.4062 1.2947 38 1 7.4103 -6.1997 -0.2997 39 1 6.3035 -4.3820 -2.1840 40 1 6.1586 -2.7464 -1.4637 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364002883.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:06 Heat of formation + Delta-G solvation = -126.490142 kcal Electronic energy + Delta-G solvation = -30109.041685 eV Core-core repulsion = 26015.847990 eV Total energy + Delta-G solvation = -4093.193695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.40583 -38.26330 -37.62662 -36.41123 -35.01426 -34.65670 -33.94309 -32.90875 -30.39601 -30.26795 -29.68870 -28.60967 -25.65133 -23.64109 -22.31573 -21.78040 -21.24440 -19.96861 -18.69832 -17.85899 -17.54755 -17.16942 -16.78106 -16.23407 -15.91242 -15.57997 -15.46467 -15.06322 -14.58297 -14.41707 -14.03274 -13.84928 -13.44126 -13.31204 -12.93803 -12.83532 -12.68830 -12.31215 -12.09174 -11.64235 -11.58409 -11.40737 -11.27513 -11.23768 -11.18976 -11.10877 -10.83919 -10.60070 -10.50180 -10.21767 -10.00440 -9.65931 -9.57629 -9.45054 -9.16857 -8.94827 -8.06815 -7.63979 -7.09942 -4.91426 1.29773 2.19518 2.63077 2.75384 2.91507 2.95106 3.04085 3.60135 3.67676 3.70068 4.02189 4.31612 4.44098 4.68644 4.75588 5.01886 5.16645 5.20944 5.27096 5.35595 5.45569 5.56058 5.77808 5.84911 5.98166 6.14846 6.22550 6.31453 6.46658 6.66022 6.76213 6.82464 6.94858 7.16862 7.21606 7.28360 7.40073 7.52742 7.69917 7.74883 7.78430 8.14147 8.39171 8.50960 8.59716 9.83011 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012493 B = 0.006512 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.720868 B = 4298.829079 C = 5124.115096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.084 3.916 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.462 4.462 8 H 0.083 0.917 9 C 0.195 3.805 10 C -0.159 4.159 11 C -0.073 4.073 12 C -0.240 4.240 13 C 0.005 3.995 14 C -0.765 4.765 15 S 2.692 3.308 16 O -0.988 6.988 17 O -0.954 6.954 18 N -1.107 6.107 19 C 0.134 3.866 20 C 0.516 3.484 21 N -0.824 5.824 22 O -0.537 6.537 23 C -0.182 4.182 24 C 0.050 3.950 25 O -0.370 6.370 26 C 0.062 3.938 27 H 0.288 0.712 28 H 0.124 0.876 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.418 0.582 33 H 0.409 0.591 34 H 0.405 0.595 35 H 0.104 0.896 36 H 0.127 0.873 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.577 -1.759 -4.320 8.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.137 4.137 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.177 1.177 7 C -0.491 4.491 8 H 0.101 0.899 9 C 0.191 3.809 10 C -0.179 4.179 11 C -0.092 4.092 12 C -0.260 4.260 13 C -0.015 4.015 14 C -0.861 4.861 15 S 2.790 3.210 16 O -0.978 6.978 17 O -0.945 6.945 18 N -0.864 5.864 19 C 0.040 3.960 20 C 0.296 3.704 21 N -0.387 5.387 22 O -0.414 6.414 23 C -0.221 4.221 24 C -0.026 4.026 25 O -0.289 6.289 26 C -0.017 4.017 27 H 0.099 0.901 28 H 0.141 0.859 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.253 0.747 33 H 0.241 0.759 34 H 0.237 0.763 35 H 0.122 0.878 36 H 0.145 0.855 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.602 -2.521 -3.446 8.719 hybrid contribution -0.641 1.428 -0.680 1.706 sum 6.961 -1.093 -4.127 8.166 Atomic orbital electron populations 1.69750 1.07646 1.30147 1.32729 1.25855 0.94902 1.01619 0.91330 0.86179 0.81011 0.79760 0.79348 1.19032 1.19818 1.17730 1.19724 0.95458 0.90522 1.43423 0.89944 1.16927 0.90340 0.89231 0.84414 1.21455 0.98305 0.96359 1.01821 1.20943 0.97309 0.93628 0.97276 1.20504 1.00676 0.97619 1.07203 1.20225 0.93305 0.94646 0.93349 1.29875 1.24874 1.02144 1.29188 1.01454 0.73201 0.72756 0.73555 1.93380 1.85900 1.40296 1.78243 1.93571 1.85911 1.50584 1.64399 1.55814 1.51315 1.25238 1.54005 1.21628 0.94594 0.90183 0.89602 1.20253 0.83016 0.85610 0.81514 1.43989 1.30392 1.10439 1.53923 1.90702 1.71051 1.20181 1.59428 1.23891 0.95206 0.97163 1.05822 1.23213 0.94714 0.85971 0.98737 1.88910 1.43380 1.38450 1.58117 1.23712 0.83172 1.02227 0.92572 0.90127 0.85871 0.88824 0.88785 0.87607 0.74671 0.75942 0.76325 0.87803 0.85500 0.89549 0.92142 0.90403 0.87521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.70 10.94 55.55 0.61 -17.10 16 2 C 0.08 1.83 5.30 -17.34 -0.09 1.74 16 3 Si 0.91 16.57 29.56 -169.99 -5.03 11.55 16 4 H -0.27 -4.56 7.11 56.52 0.40 -4.16 16 5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.25 -4.63 7.11 56.52 0.40 -4.23 16 7 C -0.46 -10.04 6.49 -37.74 -0.24 -10.29 16 8 H 0.08 1.63 5.96 -52.49 -0.31 1.32 16 9 C 0.20 4.28 3.45 -106.82 -0.37 3.91 16 10 C -0.16 -3.44 8.63 -38.87 -0.34 -3.77 16 11 C -0.07 -1.47 10.02 -39.66 -0.40 -1.87 16 12 C -0.24 -4.92 10.05 -39.29 -0.39 -5.32 16 13 C 0.00 0.10 9.19 -39.66 -0.36 -0.26 16 14 C -0.77 -16.49 3.39 -38.87 -0.13 -16.63 16 15 S 2.69 54.96 4.88 -107.50 -0.53 54.44 16 16 O -0.99 -21.12 13.65 -57.17 -0.78 -21.90 16 17 O -0.95 -22.40 16.47 -57.17 -0.94 -23.34 16 18 N -1.11 -17.72 4.43 1.23 0.01 -17.72 16 19 C 0.13 2.02 0.96 -130.97 -0.13 1.90 16 20 C 0.52 8.64 5.42 -10.99 -0.06 8.58 16 21 N -0.82 -12.90 5.80 31.22 0.18 -12.72 16 22 O -0.54 -10.43 16.36 5.55 0.09 -10.34 16 23 C -0.18 -2.78 5.92 -25.20 -0.15 -2.93 16 24 C 0.05 0.64 7.69 37.73 0.29 0.93 16 25 O -0.37 -4.98 11.54 -35.23 -0.41 -5.39 16 26 C 0.06 0.76 6.71 38.21 0.26 1.02 16 27 H 0.29 5.97 8.30 -40.82 -0.34 5.63 16 28 H 0.12 2.72 6.42 -52.49 -0.34 2.38 16 29 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 31 H 0.11 2.25 7.32 -52.49 -0.38 1.86 16 32 H 0.42 5.79 8.34 -34.47 -0.29 5.50 16 33 H 0.41 6.09 6.62 -40.82 -0.27 5.82 16 34 H 0.41 6.44 8.93 -40.82 -0.36 6.07 16 35 H 0.10 1.63 6.78 -51.93 -0.35 1.27 16 36 H 0.13 2.17 5.00 -51.93 -0.26 1.91 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 40 H 0.11 1.08 8.08 -51.93 -0.42 0.66 16 LS Contribution 330.37 15.07 4.98 4.98 Total: -1.00 -29.08 330.37 -8.16 -37.25 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: -4.23 Total: 23.28 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -2.12 Total: -22.98 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.79 Total: -47.53 kcal Atomic # 8 Polarization: -58.94 SS G_CDS: -2.04 Total: -60.98 kcal Atomic # 14 Polarization: 16.57 SS G_CDS: -5.03 Total: 11.55 kcal Atomic # 16 Polarization: 54.96 SS G_CDS: -0.53 Total: 54.44 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.08 -8.16 -37.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364002883.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.243 kcal (2) G-P(sol) polarization free energy of solvation -29.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds