Wall clock time and date at job start Sat Apr 11 2020 05:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86794 * 119.99902 * 2 1 4 4 H 1.48501 * 109.47059 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47245 * 299.99863 * 3 2 1 6 6 H 1.48500 * 109.47304 * 59.99788 * 3 2 1 7 7 C 1.39950 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99737 * 189.08672 * 7 2 1 9 9 C 1.41391 * 120.00205 * 9.08370 * 7 2 1 10 10 C 1.40738 * 120.24516 * 30.72316 * 9 7 2 11 11 C 1.37599 * 119.74469 * 179.97438 * 10 9 7 12 12 C 1.38653 * 120.24999 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50105 * 359.97438 * 12 11 10 14 14 C 1.37641 * 120.25134 * 359.97438 * 13 12 11 15 15 S 1.76197 * 120.13331 * 180.02562 * 14 13 12 16 16 O 1.42096 * 106.40305 * 228.27956 * 15 14 13 17 17 O 1.42104 * 106.39973 * 1.19883 * 15 14 13 18 18 N 1.65599 * 107.21968 * 114.73428 * 15 14 13 19 19 C 1.46502 * 120.00537 * 292.28060 * 18 15 14 20 20 C 1.50699 * 110.43198 * 305.67851 * 19 18 15 21 21 N 1.34782 * 120.00010 * 322.55872 * 20 19 18 22 22 O 1.21280 * 120.00248 * 142.56362 * 20 19 18 23 23 C 1.54811 * 110.48797 * 68.21725 * 19 18 15 24 24 C 1.55345 * 101.92997 * 97.82770 * 23 19 18 25 25 O 1.44383 * 103.50053 * 37.05148 * 24 23 19 26 26 C 1.43736 * 106.97572 * 319.90864 * 25 24 23 27 27 H 0.96993 * 120.00165 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.12382 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.87351 * 180.29669 * 11 10 9 30 30 H 1.07991 * 119.75089 * 179.97438 * 12 11 10 31 31 H 1.08003 * 119.87974 * 180.02562 * 13 12 11 32 32 H 0.97000 * 119.99631 * 112.27637 * 18 15 14 33 33 H 0.97001 * 120.00184 * 4.90859 * 21 20 19 34 34 H 0.96998 * 119.99923 * 184.91792 * 21 20 19 35 35 H 1.09002 * 110.90936 * 215.99576 * 23 19 18 36 36 H 1.08997 * 110.90860 * 339.60120 * 23 19 18 37 37 H 1.09003 * 110.64014 * 278.53908 * 24 23 19 38 38 H 1.08995 * 110.72415 * 155.60983 * 24 23 19 39 39 H 1.09002 * 109.88026 * 267.08350 * 26 25 24 40 40 H 1.09006 * 109.87844 * 145.93647 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0778 -1.2179 0.1472 9 6 1.3144 -2.4287 -0.1944 10 6 0.1521 -2.4636 -0.9872 11 6 -0.5146 -3.6534 -1.1694 12 6 -0.0456 -4.8150 -0.5750 13 6 1.0981 -4.7924 0.2078 14 6 1.7817 -3.6138 0.4030 15 16 3.2355 -3.5888 1.3982 16 8 3.0864 -2.5001 2.2990 17 8 3.4525 -4.9268 1.8250 18 7 4.5031 -3.2037 0.4046 19 6 4.9344 -4.1455 -0.6313 20 6 5.2301 -5.4937 -0.0265 21 7 5.8133 -5.5752 1.1859 22 8 4.9433 -6.5055 -0.6306 23 6 3.8542 -4.2711 -1.7331 24 6 4.3923 -3.3030 -2.8224 25 8 5.8229 -3.4887 -2.7613 26 6 6.1722 -3.6033 -1.3717 27 1 -0.4850 0.8400 0.0004 28 1 -0.2147 -1.5600 -1.4514 29 1 -1.4040 -3.6835 -1.7813 30 1 -0.5754 -5.7443 -0.7231 31 1 1.4547 -5.7033 0.6658 32 1 4.9600 -2.3543 0.5086 33 1 5.9780 -4.7693 1.7001 34 1 6.0686 -6.4397 1.5442 35 1 3.8008 -5.2922 -2.1110 36 1 2.8824 -3.9430 -1.3644 37 1 4.1286 -2.2725 -2.5847 38 1 4.0112 -3.5785 -3.8056 39 1 6.4419 -2.6243 -0.9754 40 1 7.0065 -4.2952 -1.2551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364002888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:08 Heat of formation + Delta-G solvation = -124.563861 kcal Electronic energy + Delta-G solvation = -29942.579814 eV Core-core repulsion = 25849.469649 eV Total energy + Delta-G solvation = -4093.110166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.45269 -38.10864 -37.73557 -36.39473 -35.06618 -34.81101 -33.96256 -33.10770 -30.47707 -30.09616 -29.56363 -28.56889 -25.64306 -23.75684 -22.37092 -21.68105 -21.23843 -20.03886 -18.74709 -17.89350 -17.59098 -17.33085 -16.69719 -16.21960 -15.87533 -15.71345 -15.47728 -14.96298 -14.62339 -14.40671 -14.14121 -13.77181 -13.42189 -13.31303 -13.17575 -12.84063 -12.46041 -12.31513 -11.90202 -11.62121 -11.43422 -11.37664 -11.31621 -11.24178 -11.16902 -11.00857 -10.92200 -10.63235 -10.57765 -10.38257 -9.98329 -9.64617 -9.55058 -9.45806 -9.33558 -8.96909 -8.07387 -7.68016 -7.10363 -4.87207 1.27703 2.21532 2.64710 2.72003 2.91110 2.95841 3.02785 3.58764 3.60330 3.69549 3.99515 4.32819 4.48121 4.56080 4.82226 4.98989 5.05833 5.24652 5.37349 5.47041 5.51224 5.58258 5.87871 5.95749 6.00336 6.16452 6.26182 6.33563 6.45768 6.67332 6.84235 6.87048 6.96323 7.02490 7.17372 7.23104 7.41319 7.51703 7.55380 7.72273 7.78388 8.17805 8.40240 8.44693 8.53666 9.82531 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.006341 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.433114 B = 4414.388324 C = 4895.455338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.081 3.919 3 Si 0.916 3.084 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.448 4.448 8 H 0.085 0.915 9 C 0.188 3.812 10 C -0.156 4.156 11 C -0.074 4.074 12 C -0.244 4.244 13 C -0.001 4.001 14 C -0.775 4.775 15 S 2.688 3.312 16 O -0.957 6.957 17 O -0.981 6.981 18 N -1.112 6.112 19 C 0.133 3.867 20 C 0.531 3.469 21 N -0.829 5.829 22 O -0.532 6.532 23 C -0.180 4.180 24 C 0.052 3.948 25 O -0.373 6.373 26 C 0.066 3.934 27 H 0.288 0.712 28 H 0.125 0.875 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.417 0.583 33 H 0.396 0.604 34 H 0.402 0.598 35 H 0.103 0.897 36 H 0.123 0.877 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.718 -1.216 -1.765 8.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.140 4.140 3 Si 0.739 3.261 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.477 4.477 8 H 0.103 0.897 9 C 0.183 3.817 10 C -0.176 4.176 11 C -0.093 4.093 12 C -0.264 4.264 13 C -0.021 4.021 14 C -0.870 4.870 15 S 2.786 3.214 16 O -0.947 6.947 17 O -0.971 6.971 18 N -0.870 5.870 19 C 0.040 3.960 20 C 0.312 3.688 21 N -0.391 5.391 22 O -0.407 6.407 23 C -0.219 4.219 24 C -0.024 4.024 25 O -0.291 6.291 26 C -0.013 4.013 27 H 0.099 0.901 28 H 0.143 0.857 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.252 0.748 33 H 0.224 0.776 34 H 0.232 0.768 35 H 0.121 0.879 36 H 0.141 0.859 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.434 -1.950 -1.554 8.795 hybrid contribution -0.154 1.302 0.173 1.322 sum 8.280 -0.647 -1.382 8.420 Atomic orbital electron populations 1.69763 1.07715 1.30120 1.32370 1.25921 0.94922 1.01780 0.91419 0.86114 0.81029 0.80028 0.78930 1.17827 1.19422 1.19312 1.19807 0.95972 0.90625 1.41276 0.89735 1.16987 0.90404 0.89495 0.84811 1.21511 0.98088 0.96699 1.01311 1.20939 0.97466 0.93505 0.97384 1.20522 1.00776 0.97355 1.07756 1.20253 0.93438 0.94902 0.93480 1.29750 1.25359 1.01481 1.30448 1.01564 0.73458 0.72840 0.73514 1.93571 1.85693 1.54522 1.60930 1.93525 1.85696 1.37555 1.80334 1.56100 1.52165 1.28442 1.50332 1.21551 0.97663 0.87215 0.89577 1.20136 0.76561 0.90409 0.81679 1.43493 1.63579 1.12681 1.19318 1.90708 1.51502 1.36401 1.62103 1.24079 1.00351 1.02970 0.94461 1.23673 0.79480 0.99410 0.99869 1.88858 1.23750 1.93990 1.22525 1.23230 0.94738 1.00818 0.82501 0.90103 0.85685 0.88682 0.88593 0.87367 0.74789 0.77566 0.76759 0.87871 0.85933 0.90825 0.88543 0.90493 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.19 10.89 55.55 0.60 -17.58 16 2 C 0.08 1.83 5.27 -17.34 -0.09 1.74 16 3 Si 0.92 17.03 29.57 -169.99 -5.03 12.01 16 4 H -0.25 -4.55 7.11 56.52 0.40 -4.15 16 5 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 6 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.45 -10.36 7.57 -37.74 -0.29 -10.65 16 8 H 0.08 1.79 5.79 -52.49 -0.30 1.48 16 9 C 0.19 4.41 4.90 -106.82 -0.52 3.89 16 10 C -0.16 -3.62 8.65 -38.87 -0.34 -3.95 16 11 C -0.07 -1.57 10.02 -39.66 -0.40 -1.97 16 12 C -0.24 -5.13 10.05 -39.29 -0.39 -5.52 16 13 C 0.00 -0.02 9.09 -39.66 -0.36 -0.38 16 14 C -0.77 -17.26 3.51 -38.87 -0.14 -17.39 16 15 S 2.69 53.46 4.92 -107.50 -0.53 52.94 16 16 O -0.96 -21.86 16.58 -57.17 -0.95 -22.81 16 17 O -0.98 -19.91 13.19 -57.17 -0.75 -20.66 16 18 N -1.11 -17.18 4.10 0.84 0.00 -17.17 16 19 C 0.13 2.04 1.01 -131.45 -0.13 1.91 16 20 C 0.53 8.74 5.10 -10.98 -0.06 8.68 16 21 N -0.83 -10.95 7.20 31.22 0.22 -10.73 16 22 O -0.53 -10.49 16.38 5.56 0.09 -10.40 16 23 C -0.18 -3.03 6.23 -24.53 -0.15 -3.18 16 24 C 0.05 0.76 7.73 38.40 0.30 1.06 16 25 O -0.37 -5.51 11.52 -35.23 -0.41 -5.92 16 26 C 0.07 0.85 7.16 37.73 0.27 1.12 16 27 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 28 H 0.13 2.94 6.32 -52.49 -0.33 2.61 16 29 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 30 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.11 2.28 7.32 -52.48 -0.38 1.90 16 32 H 0.42 5.36 7.89 -34.47 -0.27 5.09 16 33 H 0.40 4.45 8.08 -40.82 -0.33 4.12 16 34 H 0.40 4.68 8.93 -40.82 -0.36 4.32 16 35 H 0.10 1.82 6.81 -51.93 -0.35 1.47 16 36 H 0.12 2.30 3.74 -51.93 -0.19 2.11 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.08 0.81 7.48 -51.93 -0.39 0.42 16 40 H 0.09 1.03 7.69 -51.93 -0.40 0.63 16 LS Contribution 332.73 15.07 5.01 5.01 Total: -1.00 -30.94 332.73 -8.17 -39.11 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: -4.15 Total: 20.85 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -2.30 Total: -24.65 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.83 Total: -45.48 kcal Atomic # 8 Polarization: -57.77 SS G_CDS: -2.02 Total: -59.78 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.01 kcal Atomic # 16 Polarization: 53.46 SS G_CDS: -0.53 Total: 52.94 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.94 -8.17 -39.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364002888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.456 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds