Wall clock time and date at job start Sat Apr 11 2020 05:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86794 * 119.99902 * 2 1 4 4 H 1.48501 * 109.47059 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47245 * 299.99863 * 3 2 1 6 6 H 1.48500 * 109.47304 * 59.99788 * 3 2 1 7 7 C 1.39950 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99737 * 189.08672 * 7 2 1 9 9 C 1.41391 * 120.00205 * 9.08370 * 7 2 1 10 10 C 1.40738 * 120.24516 * 30.72316 * 9 7 2 11 11 C 1.37599 * 119.74469 * 179.97438 * 10 9 7 12 12 C 1.38653 * 120.24999 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50105 * 359.97438 * 12 11 10 14 14 C 1.37641 * 120.25134 * 359.97438 * 13 12 11 15 15 S 1.76197 * 120.13331 * 180.02562 * 14 13 12 16 16 O 1.42096 * 106.40305 * 228.27956 * 15 14 13 17 17 O 1.42104 * 106.39973 * 1.19883 * 15 14 13 18 18 N 1.65599 * 107.21968 * 114.73428 * 15 14 13 19 19 C 1.46502 * 120.00537 * 292.28060 * 18 15 14 20 20 C 1.50699 * 110.43198 * 305.67851 * 19 18 15 21 21 N 1.34782 * 120.00010 * 322.55872 * 20 19 18 22 22 O 1.21280 * 120.00248 * 142.56362 * 20 19 18 23 23 C 1.54811 * 110.48797 * 68.21725 * 19 18 15 24 24 C 1.55345 * 101.92997 * 97.82770 * 23 19 18 25 25 O 1.44383 * 103.50053 * 37.05148 * 24 23 19 26 26 C 1.43736 * 106.97572 * 319.90864 * 25 24 23 27 27 H 0.96993 * 120.00165 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.12382 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.87351 * 180.29669 * 11 10 9 30 30 H 1.07991 * 119.75089 * 179.97438 * 12 11 10 31 31 H 1.08003 * 119.87974 * 180.02562 * 13 12 11 32 32 H 0.97000 * 119.99631 * 112.27637 * 18 15 14 33 33 H 0.97001 * 120.00184 * 4.90859 * 21 20 19 34 34 H 0.96998 * 119.99923 * 184.91792 * 21 20 19 35 35 H 1.09002 * 110.90936 * 215.99576 * 23 19 18 36 36 H 1.08997 * 110.90860 * 339.60120 * 23 19 18 37 37 H 1.09003 * 110.64014 * 278.53908 * 24 23 19 38 38 H 1.08995 * 110.72415 * 155.60983 * 24 23 19 39 39 H 1.09002 * 109.88026 * 267.08350 * 26 25 24 40 40 H 1.09006 * 109.87844 * 145.93647 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0778 -1.2179 0.1472 9 6 1.3144 -2.4287 -0.1944 10 6 0.1521 -2.4636 -0.9872 11 6 -0.5146 -3.6534 -1.1694 12 6 -0.0456 -4.8150 -0.5750 13 6 1.0981 -4.7924 0.2078 14 6 1.7817 -3.6138 0.4030 15 16 3.2355 -3.5888 1.3982 16 8 3.0864 -2.5001 2.2990 17 8 3.4525 -4.9268 1.8250 18 7 4.5031 -3.2037 0.4046 19 6 4.9344 -4.1455 -0.6313 20 6 5.2301 -5.4937 -0.0265 21 7 5.8133 -5.5752 1.1859 22 8 4.9433 -6.5055 -0.6306 23 6 3.8542 -4.2711 -1.7331 24 6 4.3923 -3.3030 -2.8224 25 8 5.8229 -3.4887 -2.7613 26 6 6.1722 -3.6033 -1.3717 27 1 -0.4850 0.8400 0.0004 28 1 -0.2147 -1.5600 -1.4514 29 1 -1.4040 -3.6835 -1.7813 30 1 -0.5754 -5.7443 -0.7231 31 1 1.4547 -5.7033 0.6658 32 1 4.9600 -2.3543 0.5086 33 1 5.9780 -4.7693 1.7001 34 1 6.0686 -6.4397 1.5442 35 1 3.8008 -5.2922 -2.1110 36 1 2.8824 -3.9430 -1.3644 37 1 4.1286 -2.2725 -2.5847 38 1 4.0112 -3.5785 -3.8056 39 1 6.4419 -2.6243 -0.9754 40 1 7.0065 -4.2952 -1.2551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364002888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:08 Heat of formation + Delta-G solvation = -149.824327 kcal Electronic energy + Delta-G solvation = -29943.675190 eV Core-core repulsion = 25849.469649 eV Total energy + Delta-G solvation = -4094.205542 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.69364 -39.52156 -39.24172 -38.05725 -36.74081 -36.14560 -35.62914 -34.32812 -32.10956 -31.56911 -31.12274 -29.73316 -27.34478 -24.92655 -23.71854 -23.24744 -22.93967 -21.35283 -20.19505 -19.53593 -18.99182 -18.68929 -18.06420 -17.70752 -17.24402 -17.08120 -16.88631 -16.23317 -16.05710 -16.00460 -15.46826 -15.16431 -14.99940 -14.95459 -14.50039 -14.45219 -13.81567 -13.71711 -13.35031 -13.24902 -13.00231 -12.93053 -12.87161 -12.80745 -12.61927 -12.51100 -12.33218 -12.09701 -12.08292 -11.71185 -11.63556 -11.20099 -11.09280 -10.72139 -10.54750 -10.36554 -9.76368 -9.40912 -8.76139 -6.60587 -0.29726 0.51857 0.97880 1.40704 1.43851 1.52117 1.54989 2.14316 2.17443 2.39250 2.65443 2.85063 2.92960 3.29305 3.45718 3.67839 3.78842 3.87857 4.07908 4.14578 4.30573 4.34088 4.50006 4.59187 4.69486 4.73526 4.83370 4.96619 4.99929 5.12198 5.14532 5.29334 5.51390 5.71113 5.74763 5.81442 5.92377 6.01170 6.03119 6.07493 6.37480 6.47566 6.69399 6.83487 7.27266 8.19765 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.006341 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.433114 B = 4414.388324 C = 4895.455338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.040 3.960 3 Si 0.972 3.028 4 H -0.239 1.239 5 H -0.259 1.259 6 H -0.273 1.273 7 C -0.471 4.471 8 H 0.097 0.903 9 C 0.170 3.830 10 C -0.180 4.180 11 C -0.075 4.075 12 C -0.249 4.249 13 C -0.014 4.014 14 C -0.788 4.788 15 S 2.712 3.288 16 O -0.986 6.986 17 O -0.987 6.987 18 N -1.094 6.094 19 C 0.135 3.865 20 C 0.524 3.476 21 N -0.814 5.814 22 O -0.570 6.570 23 C -0.186 4.186 24 C 0.057 3.943 25 O -0.380 6.380 26 C 0.066 3.934 27 H 0.294 0.706 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.111 0.889 32 H 0.432 0.568 33 H 0.408 0.592 34 H 0.410 0.590 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.484 -0.551 -1.872 10.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.178 4.178 3 Si 0.792 3.208 4 H -0.162 1.162 5 H -0.184 1.184 6 H -0.198 1.198 7 C -0.499 4.499 8 H 0.115 0.885 9 C 0.166 3.834 10 C -0.200 4.200 11 C -0.093 4.093 12 C -0.269 4.269 13 C -0.034 4.034 14 C -0.882 4.882 15 S 2.807 3.193 16 O -0.976 6.976 17 O -0.977 6.977 18 N -0.856 5.856 19 C 0.042 3.958 20 C 0.306 3.694 21 N -0.376 5.376 22 O -0.449 6.449 23 C -0.226 4.226 24 C -0.019 4.019 25 O -0.299 6.299 26 C -0.013 4.013 27 H 0.105 0.895 28 H 0.133 0.867 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.129 0.871 32 H 0.271 0.729 33 H 0.238 0.762 34 H 0.243 0.757 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.200 -1.275 -1.640 10.409 hybrid contribution -0.712 0.972 0.229 1.226 sum 9.488 -0.304 -1.410 9.597 Atomic orbital electron populations 1.69815 1.09062 1.31245 1.33378 1.26772 0.95599 1.04740 0.90680 0.85275 0.80636 0.76008 0.78883 1.16178 1.18374 1.19843 1.20119 0.96732 0.90985 1.42088 0.88474 1.17227 0.90815 0.90226 0.85146 1.21569 0.99031 0.97051 1.02302 1.21220 0.97966 0.92963 0.97180 1.20840 1.00589 0.98287 1.07144 1.20449 0.93933 0.95049 0.93921 1.30090 1.26799 1.01221 1.30082 1.00791 0.73266 0.72153 0.73047 1.93530 1.86295 1.55566 1.62258 1.93513 1.85735 1.37830 1.80592 1.55612 1.50716 1.29370 1.49918 1.21583 0.98484 0.86751 0.89015 1.20345 0.76474 0.90307 0.82248 1.43420 1.62029 1.13864 1.18330 1.90694 1.53354 1.37565 1.63253 1.24018 1.00061 1.02652 0.95818 1.23646 0.79584 0.98859 0.99835 1.88849 1.23352 1.94086 1.23620 1.23457 0.93656 1.02859 0.81307 0.89519 0.86733 0.86229 0.86231 0.87066 0.72941 0.76213 0.75742 0.89262 0.87884 0.90627 0.87399 0.87408 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.47 10.89 21.83 0.24 -38.23 16 2 C 0.04 1.80 5.27 85.26 0.45 2.25 16 3 Si 0.97 33.85 29.57 68.60 2.03 35.88 16 4 H -0.24 -7.63 7.11 99.48 0.71 -6.92 16 5 H -0.26 -8.53 7.11 99.48 0.71 -7.83 16 6 H -0.27 -9.66 7.11 99.48 0.71 -8.96 16 7 C -0.47 -21.68 7.57 23.46 0.18 -21.50 16 8 H 0.10 4.01 5.79 -2.91 -0.02 4.00 16 9 C 0.17 8.07 4.90 -21.29 -0.10 7.97 16 10 C -0.18 -8.45 8.65 22.73 0.20 -8.25 16 11 C -0.07 -3.16 10.02 22.22 0.22 -2.94 16 12 C -0.25 -10.35 10.05 22.46 0.23 -10.12 16 13 C -0.01 -0.60 9.09 22.22 0.20 -0.40 16 14 C -0.79 -35.18 3.51 22.73 0.08 -35.10 16 15 S 2.71 105.64 4.92 -56.49 -0.28 105.36 16 16 O -0.99 -44.38 16.58 -128.00 -2.12 -46.50 16 17 O -0.99 -39.11 13.19 -128.00 -1.69 -40.80 16 18 N -1.09 -31.77 4.10 -151.25 -0.62 -32.39 16 19 C 0.13 3.89 1.01 3.84 0.00 3.89 16 20 C 0.52 16.54 5.10 87.66 0.45 16.99 16 21 N -0.81 -19.91 7.20 -173.53 -1.25 -21.16 16 22 O -0.57 -22.21 16.38 -3.03 -0.05 -22.26 16 23 C -0.19 -6.17 6.23 32.02 0.20 -5.97 16 24 C 0.06 1.60 7.73 72.79 0.56 2.16 16 25 O -0.38 -10.34 11.52 -148.98 -1.72 -12.05 16 26 C 0.07 1.49 7.16 72.35 0.52 2.00 16 27 H 0.29 12.56 8.30 -92.71 -0.77 11.79 16 28 H 0.11 5.54 6.32 -2.91 -0.02 5.52 16 29 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 30 H 0.12 4.31 8.06 -2.92 -0.02 4.29 16 31 H 0.11 4.70 7.32 -2.91 -0.02 4.68 16 32 H 0.43 9.93 7.89 -96.75 -0.76 9.17 16 33 H 0.41 8.13 8.08 -92.71 -0.75 7.38 16 34 H 0.41 8.81 8.93 -92.71 -0.83 7.98 16 35 H 0.09 3.19 6.81 -2.39 -0.02 3.17 16 36 H 0.10 3.88 3.74 -2.39 -0.01 3.87 16 37 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.11 1.80 7.48 -2.39 -0.02 1.78 16 40 H 0.11 2.11 7.69 -2.38 -0.02 2.09 16 Total: -1.00 -66.58 332.73 -3.47 -70.05 By element: Atomic # 1 Polarization: 52.32 SS G_CDS: -1.19 Total: 51.13 kcal Atomic # 6 Polarization: -52.21 SS G_CDS: 3.18 Total: -49.03 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -1.63 Total: -91.78 kcal Atomic # 8 Polarization: -116.03 SS G_CDS: -5.58 Total: -121.61 kcal Atomic # 14 Polarization: 33.85 SS G_CDS: 2.03 Total: 35.88 kcal Atomic # 16 Polarization: 105.64 SS G_CDS: -0.28 Total: 105.36 kcal Total: -66.58 -3.47 -70.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364002888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.772 kcal (2) G-P(sol) polarization free energy of solvation -66.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds