Wall clock time and date at job start Sat Apr 11 2020 05:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00415 * 2 1 4 4 H 1.48504 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47019 * 300.00252 * 3 2 1 6 6 H 1.48501 * 109.47032 * 59.99973 * 3 2 1 7 7 C 1.38700 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00359 * 179.97438 * 7 2 1 9 9 O 1.34814 * 119.99687 * 0.02562 * 7 2 1 10 10 C 1.35520 * 116.99856 * 185.08449 * 9 7 2 11 11 C 1.38831 * 120.16298 * 354.38739 * 10 9 7 12 12 C 1.38025 * 120.07394 * 180.02562 * 11 10 9 13 13 C 1.38572 * 120.39957 * 359.97438 * 12 11 10 14 14 C 1.37829 * 120.32733 * 0.02562 * 13 12 11 15 15 C 1.39666 * 119.91536 * 359.97438 * 14 13 12 16 16 C 1.47536 * 120.19565 * 179.97438 * 15 14 13 17 17 O 1.21592 * 120.00000 * 185.44553 * 16 15 14 18 18 N 1.34777 * 120.00265 * 5.44537 * 16 15 14 19 19 C 1.46499 * 120.00402 * 174.94622 * 18 16 15 20 20 C 1.53003 * 109.46975 * 185.02500 * 19 18 16 21 21 S 1.81398 * 115.54785 * 268.08139 * 20 19 18 22 22 N 1.65607 * 104.45111 * 294.77893 * 21 20 19 23 23 O 1.42102 * 110.54587 * 46.40237 * 21 20 19 24 24 O 1.42102 * 110.54228 * 183.15756 * 21 20 19 25 25 C 1.53001 * 117.49794 * 122.37711 * 20 19 18 26 26 C 1.52991 * 59.99844 * 252.50804 * 25 20 19 27 27 H 0.97007 * 119.99619 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.96222 * 0.02562 * 11 10 9 29 29 H 1.08002 * 119.80364 * 179.72618 * 12 11 10 30 30 H 1.08005 * 119.84139 * 179.97438 * 13 12 11 31 31 H 1.07997 * 120.04051 * 179.97438 * 14 13 12 32 32 H 0.97000 * 119.99647 * 354.95025 * 18 16 15 33 33 H 1.09002 * 109.47038 * 305.02243 * 19 18 16 34 34 H 1.08994 * 109.46882 * 65.02392 * 19 18 16 35 35 H 0.96994 * 119.99670 * 4.52374 * 22 21 20 36 36 H 0.97000 * 119.99735 * 184.53140 * 22 21 20 37 37 H 1.09003 * 117.49792 * 0.02562 * 25 20 19 38 38 H 1.08998 * 117.49793 * 145.01735 * 25 20 19 39 39 H 1.09002 * 117.49755 * 252.51091 * 26 25 20 40 40 H 1.09002 * 117.50104 * 107.49048 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3964 -1.2124 6 1 1.8906 2.3964 1.2125 7 6 2.0087 -1.2012 0.0005 8 1 3.0886 -1.2013 0.0001 9 8 1.3345 -2.3687 0.0005 10 6 2.0684 -3.5029 0.1081 11 6 3.4552 -3.4403 0.0948 12 6 4.2009 -4.5966 0.2040 13 6 3.5739 -5.8262 0.3279 14 6 2.1981 -5.9075 0.3429 15 6 1.4305 -4.7458 0.2334 16 6 -0.0427 -4.8258 0.2482 17 8 -0.7077 -3.8266 0.0536 18 7 -0.6513 -6.0062 0.4774 19 6 -2.1097 -6.0664 0.6023 20 6 -2.5308 -7.4876 0.9818 21 16 -2.9183 -8.5863 -0.4086 22 7 -4.2616 -7.9133 -1.1053 23 8 -1.9177 -8.4913 -1.4132 24 8 -3.3645 -9.8500 0.0638 25 6 -3.3380 -7.6652 2.2693 26 6 -1.8761 -8.1129 2.2151 27 1 -0.4850 0.8401 0.0004 28 1 3.9512 -2.4857 -0.0010 29 1 5.2795 -4.5433 0.1887 30 1 4.1662 -6.7254 0.4122 31 1 1.7143 -6.8682 0.4392 32 1 -0.1236 -6.8160 0.5598 33 1 -2.4371 -5.3717 1.3758 34 1 -2.5673 -5.7936 -0.3486 35 1 -4.6065 -7.0684 -0.7767 36 1 -4.7034 -8.3642 -1.8417 37 1 -3.5695 -6.7695 2.8458 38 1 -4.1022 -8.4422 2.2811 39 1 -1.6785 -9.1845 2.1912 40 1 -1.1452 -7.5118 2.7562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364594089.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:13 Heat of formation + Delta-G solvation = -71.735576 kcal Electronic energy + Delta-G solvation = -27323.575230 eV Core-core repulsion = 23232.755871 eV Total energy + Delta-G solvation = -4090.819359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.73160 -38.69484 -37.62397 -37.13020 -36.33914 -36.13966 -33.63244 -33.36539 -32.35270 -30.65576 -28.93589 -27.37285 -25.37028 -23.34915 -23.04148 -22.22552 -21.30325 -19.91574 -19.46472 -18.23605 -17.99176 -17.61744 -17.30417 -16.39113 -16.14724 -15.89575 -15.55217 -14.85514 -14.68143 -14.54403 -14.24537 -14.12691 -13.76430 -13.61197 -13.39416 -12.70129 -12.54362 -12.49506 -12.38093 -12.30379 -12.17114 -12.04550 -11.73448 -11.59640 -11.34879 -11.31289 -11.12594 -10.92858 -10.78074 -10.66539 -10.61004 -10.45702 -9.59427 -8.91733 -8.89892 -8.67705 -8.28083 -7.32162 -6.46621 -4.06184 0.00468 1.70164 2.31441 2.34354 2.93576 3.10633 3.11181 3.17059 3.40061 3.62573 3.69489 3.78625 3.91975 4.07372 4.32251 4.61954 4.65361 5.01481 5.05720 5.08503 5.15876 5.34288 5.39051 5.45973 5.52437 5.56230 5.64756 5.76138 5.78212 6.06098 6.11405 6.55575 6.67020 6.79925 6.82116 6.90682 7.05710 7.22647 7.28354 7.68576 7.89474 8.03492 8.93328 9.01795 9.65894 10.67426 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015594 B = 0.003097 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.135743 B = 9037.486083 C =10093.614382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.403 4.403 8 H 0.095 0.905 9 O -0.125 6.125 10 C 0.191 3.809 11 C -0.238 4.238 12 C -0.050 4.050 13 C -0.229 4.229 14 C -0.038 4.038 15 C -0.228 4.228 16 C 0.558 3.442 17 O -0.501 6.501 18 N -0.742 5.742 19 C 0.185 3.815 20 C -0.668 4.668 21 S 2.648 3.352 22 N -1.248 6.248 23 O -0.949 6.949 24 O -0.965 6.965 25 C -0.109 4.109 26 C -0.114 4.114 27 H 0.270 0.730 28 H 0.132 0.868 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.395 0.605 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.416 0.584 36 H 0.419 0.581 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 -15.365 4.018 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.479 4.479 8 H 0.112 0.888 9 O -0.023 6.023 10 C 0.131 3.869 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.248 4.248 14 C -0.056 4.056 15 C -0.233 4.233 16 C 0.348 3.652 17 O -0.375 6.375 18 N -0.399 5.399 19 C 0.059 3.941 20 C -0.757 4.757 21 S 2.737 3.263 22 N -0.922 5.922 23 O -0.938 6.938 24 O -0.954 6.954 25 C -0.147 4.147 26 C -0.153 4.153 27 H 0.081 0.919 28 H 0.150 0.850 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.230 0.770 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.242 0.758 36 H 0.249 0.751 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.781 -15.212 3.641 16.676 hybrid contribution 0.372 1.135 0.086 1.197 sum -5.408 -14.078 3.727 15.535 Atomic orbital electron populations 1.70138 1.05978 1.27582 1.42831 1.25381 0.95806 0.98951 0.96171 0.85657 0.79213 0.80250 0.78343 1.18962 1.20005 1.20039 1.21551 0.91939 0.81104 1.53297 0.88808 1.84167 1.33575 1.10994 1.73595 1.19262 0.89865 0.87355 0.90425 1.21160 0.93363 0.99363 1.11801 1.20905 0.98669 0.92300 0.94985 1.20473 0.94037 0.97154 1.13179 1.20778 0.93913 0.95527 0.95423 1.18795 0.91710 0.92229 1.20518 1.18220 0.87933 0.82338 0.76726 1.90946 1.65795 1.34394 1.46318 1.45857 1.05928 1.10610 1.77505 1.20260 0.82705 0.89024 1.02084 1.32303 1.19596 1.13603 1.10219 1.03752 0.73814 0.73708 0.74983 1.53021 1.50591 1.37401 1.51207 1.93645 1.59607 1.86092 1.54418 1.93596 1.80689 1.38703 1.82441 1.23009 0.94930 1.04604 0.92155 1.22962 0.97557 1.01585 0.93203 0.91945 0.85045 0.87143 0.87193 0.87021 0.77016 0.89734 0.91076 0.75769 0.75105 0.86282 0.86428 0.86711 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.87 13.67 55.48 0.76 -24.11 16 2 C 0.04 1.23 5.49 -17.51 -0.10 1.13 16 3 Si 0.94 20.38 29.55 -169.99 -5.02 15.35 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.40 -11.34 9.49 30.90 0.29 -11.05 16 8 H 0.09 2.40 5.21 -52.49 -0.27 2.13 16 9 O -0.13 -3.67 7.85 -20.99 -0.16 -3.83 16 10 C 0.19 4.72 6.66 -38.60 -0.26 4.46 16 11 C -0.24 -5.10 9.16 -39.44 -0.36 -5.46 16 12 C -0.05 -0.88 10.03 -39.54 -0.40 -1.28 16 13 C -0.23 -3.79 10.02 -39.61 -0.40 -4.19 16 14 C -0.04 -0.65 9.53 -39.20 -0.37 -1.03 16 15 C -0.23 -4.95 5.89 -104.81 -0.62 -5.57 16 16 C 0.56 12.10 7.75 -12.47 -0.10 12.01 16 17 O -0.50 -13.37 15.20 -16.50 -0.25 -13.62 16 18 N -0.74 -11.71 5.34 -61.35 -0.33 -12.03 16 19 C 0.18 2.36 5.75 -4.04 -0.02 2.33 16 20 C -0.67 -5.99 2.26 -90.62 -0.20 -6.20 16 21 S 2.65 27.18 5.87 -107.50 -0.63 26.54 16 22 N -1.25 -9.31 9.43 60.35 0.57 -8.74 16 23 O -0.95 -13.81 18.10 -57.54 -1.04 -14.85 16 24 O -0.96 -11.77 17.96 -57.54 -1.03 -12.80 16 25 C -0.11 -0.69 9.85 -26.74 -0.26 -0.96 16 26 C -0.11 -0.84 9.46 -26.74 -0.25 -1.09 16 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.13 2.78 5.64 -52.48 -0.30 2.49 16 29 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.11 1.52 6.42 -52.49 -0.34 1.18 16 32 H 0.39 5.21 6.22 -40.82 -0.25 4.95 16 33 H 0.08 1.10 7.87 -51.93 -0.41 0.69 16 34 H 0.07 0.92 8.04 -51.93 -0.42 0.51 16 35 H 0.42 2.26 8.84 -34.47 -0.30 1.96 16 36 H 0.42 2.58 8.96 -34.47 -0.31 2.27 16 37 H 0.12 0.67 8.03 -51.93 -0.42 0.26 16 38 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -39.85 359.71 -9.04 -48.89 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -4.27 Total: 10.66 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -3.05 Total: -16.88 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 1.00 Total: -44.88 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -2.49 Total: -45.11 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 27.18 SS G_CDS: -0.63 Total: 26.54 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -39.85 -9.04 -48.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364594089.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.845 kcal (2) G-P(sol) polarization free energy of solvation -39.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds