Wall clock time and date at job start Sat Apr 11 2020 05:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99737 * 2 1 4 4 H 1.48505 * 109.46886 * 239.99645 * 3 2 1 5 5 H 1.48499 * 109.47252 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46756 * 120.00118 * 3 2 1 7 7 C 1.37876 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99805 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00253 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47380 * 184.48395 * 9 7 2 11 11 C 1.46892 * 111.00311 * 64.06473 * 10 9 7 12 12 C 1.50700 * 109.46840 * 75.32496 * 11 10 9 13 13 C 1.34519 * 125.78355 * 89.71965 * 12 11 10 14 14 C 1.41393 * 106.83664 * 179.88754 * 13 12 11 15 15 C 1.34517 * 106.83931 * 0.37452 * 14 13 12 16 16 O 1.34300 * 108.42082 * 359.76537 * 15 14 13 17 17 C 1.46905 * 110.99703 * 300.11177 * 10 9 7 18 18 C 1.50700 * 109.47373 * 293.95577 * 17 10 9 19 19 C 1.34513 * 125.79156 * 89.99653 * 18 17 10 20 20 C 1.41380 * 106.83952 * 180.02562 * 19 18 17 21 21 C 1.34508 * 106.84130 * 359.97438 * 20 19 18 22 22 S 1.76205 * 125.78709 * 180.02562 * 21 20 19 23 23 N 1.65600 * 107.21873 * 90.00610 * 22 21 20 24 24 O 1.42100 * 106.40216 * 203.54490 * 22 21 20 25 25 O 1.42101 * 106.40460 * 336.46350 * 22 21 20 26 26 O 1.34299 * 108.42313 * 359.73983 * 21 20 19 27 27 H 0.97000 * 120.00147 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46923 * 64.48171 * 9 7 2 29 29 H 1.08999 * 109.47067 * 304.48418 * 9 7 2 30 30 H 1.09000 * 109.47624 * 195.32623 * 11 10 9 31 31 H 1.09006 * 109.47376 * 315.33348 * 11 10 9 32 32 H 1.07997 * 126.58471 * 0.02562 * 13 12 11 33 33 H 1.08001 * 126.57638 * 180.16058 * 14 13 12 34 34 H 1.08000 * 125.78491 * 179.79343 * 15 14 13 35 35 H 1.09005 * 109.46796 * 53.95608 * 17 10 9 36 36 H 1.08998 * 109.47148 * 173.94871 * 17 10 9 37 37 H 1.07994 * 126.57723 * 359.97090 * 19 18 17 38 38 H 1.08005 * 126.57684 * 180.02562 * 20 19 18 39 39 H 0.96996 * 119.99454 * 359.97438 * 23 22 21 40 40 H 0.96997 * 119.99785 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2020 -3.6136 0.1071 11 6 2.9152 -3.5751 1.3907 12 6 1.9976 -4.0462 2.4894 13 6 1.8532 -5.3184 2.9021 14 6 0.9002 -5.3044 3.9465 15 6 0.5132 -4.0257 4.1039 16 8 1.1813 -3.2682 3.2187 17 6 3.1451 -3.6116 -1.0193 18 6 2.4008 -3.8976 -2.2981 19 6 1.8425 -2.9782 -3.1058 20 6 1.2531 -3.6817 -4.1812 21 6 1.4869 -4.9888 -3.9666 22 16 0.9687 -6.3127 -5.0076 23 7 2.1778 -6.5724 -6.1090 24 8 0.9177 -7.4718 -4.1871 25 8 -0.1477 -5.8315 -5.7432 26 8 2.1877 -5.1132 -2.8278 27 1 -0.4850 0.8400 -0.0004 28 1 0.6857 -2.5922 -0.9278 29 1 0.5659 -2.5231 0.8468 30 1 3.7876 -4.2267 1.3415 31 1 3.2356 -2.5540 1.5980 32 1 2.3681 -6.1840 2.5123 33 1 0.5478 -6.1573 4.5076 34 1 -0.2115 -3.6689 4.8207 35 1 3.6256 -2.6357 -1.0890 36 1 3.9026 -4.3790 -0.8603 37 1 1.8435 -1.9081 -2.9602 38 1 0.7184 -3.2519 -5.0154 39 1 2.9803 -6.0282 -6.0853 40 1 2.0833 -7.2686 -6.7777 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364682710.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:16 Heat of formation + Delta-G solvation = -27.474613 kcal Electronic energy + Delta-G solvation = -27442.715686 eV Core-core repulsion = 23353.815626 eV Total energy + Delta-G solvation = -4088.900060 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.39695 -41.98862 -37.23282 -37.16813 -35.92614 -33.38118 -32.93155 -32.71705 -32.42053 -31.23453 -29.35261 -27.29843 -25.87321 -24.24491 -22.11368 -21.61164 -21.16313 -20.32010 -19.65091 -19.57855 -18.59744 -17.60836 -17.14138 -16.41596 -16.28050 -16.10860 -15.64154 -15.53695 -15.28593 -14.65821 -14.30305 -14.17919 -13.70462 -13.45944 -13.14429 -12.63500 -12.45653 -12.31809 -12.30324 -12.23001 -12.18625 -12.06520 -11.78154 -11.57496 -11.32073 -11.10146 -11.00771 -10.95731 -10.68700 -10.48963 -10.18559 -9.87213 -9.80627 -9.41019 -8.70287 -8.53310 -7.98912 -7.50957 -6.14747 -4.25623 0.21134 1.29006 2.24282 2.67789 2.86193 3.09746 3.18663 3.25720 3.26568 3.33492 3.54281 3.57845 4.28677 4.71844 4.88556 5.07754 5.11979 5.16645 5.26235 5.45510 5.48871 5.57912 5.73340 5.78470 5.78848 5.88863 6.07334 6.13829 6.15648 6.25704 6.40810 6.61026 6.66182 6.81020 6.92977 7.03191 7.16813 7.38436 7.65007 7.76376 7.79333 7.93569 8.09107 8.81959 9.41395 10.90910 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009738 B = 0.003965 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.708671 B = 7059.646198 C = 9110.388530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.072 3.928 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.558 4.558 8 H 0.057 0.943 9 C 0.179 3.821 10 N -0.536 5.536 11 C 0.133 3.867 12 C 0.025 3.975 13 C -0.214 4.214 14 C -0.221 4.221 15 C -0.050 4.050 16 O -0.161 6.161 17 C 0.126 3.874 18 C 0.080 3.920 19 C -0.210 4.210 20 C -0.072 4.072 21 C -0.607 4.607 22 S 2.742 3.258 23 N -1.250 6.250 24 O -0.951 6.951 25 O -0.949 6.949 26 O -0.120 6.120 27 H 0.264 0.736 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.194 0.806 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.169 0.831 38 H 0.163 0.837 39 H 0.418 0.582 40 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.159 -9.867 -5.723 13.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.132 4.132 3 Si 0.714 3.286 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.597 4.597 8 H 0.075 0.925 9 C 0.054 3.946 10 N -0.260 5.260 11 C 0.006 3.994 12 C -0.026 4.026 13 C -0.234 4.234 14 C -0.240 4.240 15 C -0.118 4.118 16 O -0.055 6.055 17 C -0.001 4.001 18 C 0.025 3.975 19 C -0.231 4.231 20 C -0.094 4.094 21 C -0.739 4.739 22 S 2.825 3.175 23 N -0.925 5.925 24 O -0.941 6.941 25 O -0.939 6.939 26 O -0.014 6.014 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.211 0.789 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.186 0.814 38 H 0.180 0.820 39 H 0.245 0.755 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 5.841 -10.570 -5.439 13.245 hybrid contribution 1.210 2.319 0.049 2.616 sum 7.051 -8.252 -5.390 12.118 Atomic orbital electron populations 1.69936 1.06034 1.27123 1.48741 1.24905 0.94684 0.98995 0.94598 0.86749 0.79749 0.83441 0.78634 1.20216 1.21153 1.20179 1.21529 0.92938 0.91873 1.53345 0.92465 1.19960 0.90968 0.84763 0.98903 1.62504 1.16308 1.48401 0.98819 1.20373 0.91804 1.01704 0.85565 1.22337 0.95532 0.89231 0.95529 1.21455 1.03974 0.96877 1.01096 1.21713 1.02598 0.97353 1.02355 1.23917 1.00649 0.90463 0.96817 1.84161 1.43989 1.38079 1.39290 1.20583 0.92708 1.01910 0.84921 1.23135 0.97121 0.81685 0.95578 1.22054 1.03421 1.02270 0.95313 1.22011 0.96299 0.91504 0.99559 1.34739 1.19118 1.16122 1.03927 1.00709 0.72195 0.72067 0.72482 1.53072 1.37080 1.50684 1.51690 1.93605 1.85397 1.46849 1.68221 1.93647 1.47931 1.81438 1.70868 1.84139 1.55769 1.31427 1.30021 0.92567 0.94537 0.94003 0.89536 0.90915 0.84042 0.84199 0.78904 0.89316 0.90183 0.81389 0.81960 0.75475 0.74934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.78 13.29 55.43 0.74 -24.04 16 2 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 3 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.56 -13.86 7.29 -34.44 -0.25 -14.11 16 8 H 0.06 1.35 6.00 -52.49 -0.31 1.04 16 9 C 0.18 4.35 4.71 -4.98 -0.02 4.33 16 10 N -0.54 -10.71 4.62 -238.96 -1.10 -11.82 16 11 C 0.13 2.39 5.39 -4.98 -0.03 2.36 16 12 C 0.03 0.47 6.23 -35.62 -0.22 0.25 16 13 C -0.21 -3.60 10.81 -39.70 -0.43 -4.03 16 14 C -0.22 -3.42 10.91 -39.70 -0.43 -3.86 16 15 C -0.05 -0.81 12.09 29.42 0.36 -0.46 16 16 O -0.16 -3.24 10.16 5.72 0.06 -3.19 16 17 C 0.13 2.16 5.27 -4.97 -0.03 2.13 16 18 C 0.08 1.44 6.22 -35.62 -0.22 1.21 16 19 C -0.21 -3.74 9.40 -39.70 -0.37 -4.11 16 20 C -0.07 -1.12 10.63 -39.71 -0.42 -1.55 16 21 C -0.61 -9.27 7.33 29.41 0.22 -9.05 16 22 S 2.74 34.36 6.43 -107.50 -0.69 33.67 16 23 N -1.25 -9.16 9.55 60.35 0.58 -8.58 16 24 O -0.95 -15.34 18.02 -57.21 -1.03 -16.37 16 25 O -0.95 -14.13 17.83 -57.17 -1.02 -15.15 16 26 O -0.12 -2.08 10.65 5.72 0.06 -2.02 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.04 0.96 6.32 -51.93 -0.33 0.63 16 29 H 0.04 1.16 7.12 -51.93 -0.37 0.79 16 30 H 0.09 1.24 7.74 -51.93 -0.40 0.84 16 31 H 0.07 1.41 6.52 -51.93 -0.34 1.07 16 32 H 0.14 2.10 8.06 -52.49 -0.42 1.67 16 33 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.19 2.37 8.06 -52.49 -0.42 1.95 16 35 H 0.09 1.52 6.20 -51.93 -0.32 1.20 16 36 H 0.08 1.12 7.83 -51.93 -0.41 0.71 16 37 H 0.17 3.14 8.06 -52.49 -0.42 2.71 16 38 H 0.16 2.09 8.06 -52.48 -0.42 1.67 16 39 H 0.42 2.20 8.92 -34.46 -0.31 1.90 16 40 H 0.42 2.11 8.96 -34.47 -0.31 1.80 16 LS Contribution 357.36 15.07 5.39 5.39 Total: -1.00 -35.38 357.36 -8.35 -43.73 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -4.35 Total: 8.39 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: -1.95 Total: -25.07 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.21 Total: -44.44 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -1.93 Total: -36.73 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 34.36 SS G_CDS: -0.69 Total: 33.67 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.38 -8.35 -43.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364682710.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.255 kcal (2) G-P(sol) polarization free energy of solvation -35.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds