Wall clock time and date at job start Sat Apr 11 2020 05:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99737 * 2 1 4 4 H 1.48505 * 109.46886 * 239.99645 * 3 2 1 5 5 H 1.48499 * 109.47252 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46756 * 120.00118 * 3 2 1 7 7 C 1.37876 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99805 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00253 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47380 * 184.48395 * 9 7 2 11 11 C 1.46892 * 111.00311 * 64.06473 * 10 9 7 12 12 C 1.50700 * 109.46840 * 75.32496 * 11 10 9 13 13 C 1.34519 * 125.78355 * 89.71965 * 12 11 10 14 14 C 1.41393 * 106.83664 * 179.88754 * 13 12 11 15 15 C 1.34517 * 106.83931 * 0.37452 * 14 13 12 16 16 O 1.34300 * 108.42082 * 359.76537 * 15 14 13 17 17 C 1.46905 * 110.99703 * 300.11177 * 10 9 7 18 18 C 1.50700 * 109.47373 * 293.95577 * 17 10 9 19 19 C 1.34513 * 125.79156 * 89.99653 * 18 17 10 20 20 C 1.41380 * 106.83952 * 180.02562 * 19 18 17 21 21 C 1.34508 * 106.84130 * 359.97438 * 20 19 18 22 22 S 1.76205 * 125.78709 * 180.02562 * 21 20 19 23 23 N 1.65600 * 107.21873 * 90.00610 * 22 21 20 24 24 O 1.42100 * 106.40216 * 203.54490 * 22 21 20 25 25 O 1.42101 * 106.40460 * 336.46350 * 22 21 20 26 26 O 1.34299 * 108.42313 * 359.73983 * 21 20 19 27 27 H 0.97000 * 120.00147 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46923 * 64.48171 * 9 7 2 29 29 H 1.08999 * 109.47067 * 304.48418 * 9 7 2 30 30 H 1.09000 * 109.47624 * 195.32623 * 11 10 9 31 31 H 1.09006 * 109.47376 * 315.33348 * 11 10 9 32 32 H 1.07997 * 126.58471 * 0.02562 * 13 12 11 33 33 H 1.08001 * 126.57638 * 180.16058 * 14 13 12 34 34 H 1.08000 * 125.78491 * 179.79343 * 15 14 13 35 35 H 1.09005 * 109.46796 * 53.95608 * 17 10 9 36 36 H 1.08998 * 109.47148 * 173.94871 * 17 10 9 37 37 H 1.07994 * 126.57723 * 359.97090 * 19 18 17 38 38 H 1.08005 * 126.57684 * 180.02562 * 20 19 18 39 39 H 0.96996 * 119.99454 * 359.97438 * 23 22 21 40 40 H 0.96997 * 119.99785 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2020 -3.6136 0.1071 11 6 2.9152 -3.5751 1.3907 12 6 1.9976 -4.0462 2.4894 13 6 1.8532 -5.3184 2.9021 14 6 0.9002 -5.3044 3.9465 15 6 0.5132 -4.0257 4.1039 16 8 1.1813 -3.2682 3.2187 17 6 3.1451 -3.6116 -1.0193 18 6 2.4008 -3.8976 -2.2981 19 6 1.8425 -2.9782 -3.1058 20 6 1.2531 -3.6817 -4.1812 21 6 1.4869 -4.9888 -3.9666 22 16 0.9687 -6.3127 -5.0076 23 7 2.1778 -6.5724 -6.1090 24 8 0.9177 -7.4718 -4.1871 25 8 -0.1477 -5.8315 -5.7432 26 8 2.1877 -5.1132 -2.8278 27 1 -0.4850 0.8400 -0.0004 28 1 0.6857 -2.5922 -0.9278 29 1 0.5659 -2.5231 0.8468 30 1 3.7876 -4.2267 1.3415 31 1 3.2356 -2.5540 1.5980 32 1 2.3681 -6.1840 2.5123 33 1 0.5478 -6.1573 4.5076 34 1 -0.2115 -3.6689 4.8207 35 1 3.6256 -2.6357 -1.0890 36 1 3.9026 -4.3790 -0.8603 37 1 1.8435 -1.9081 -2.9602 38 1 0.7184 -3.2519 -5.0154 39 1 2.9803 -6.0282 -6.0853 40 1 2.0833 -7.2686 -6.7777 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364682710.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:15 Heat of formation + Delta-G solvation = -56.674436 kcal Electronic energy + Delta-G solvation = -27443.981885 eV Core-core repulsion = 23353.815626 eV Total energy + Delta-G solvation = -4090.166259 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.71232 -43.32704 -38.76698 -38.36559 -37.08234 -34.65549 -34.25379 -34.11607 -33.79628 -32.55045 -30.80676 -29.05599 -27.21557 -25.99038 -23.49359 -23.03507 -22.47271 -21.68958 -21.09100 -20.66518 -19.69759 -18.80228 -18.56982 -17.90937 -17.49407 -17.36623 -16.96184 -16.76835 -16.73145 -16.17669 -15.86983 -15.65708 -15.13302 -14.76030 -14.61619 -14.18036 -13.98653 -13.57053 -13.48971 -13.40275 -13.31504 -13.26775 -13.23448 -13.05963 -12.88330 -12.75596 -12.61989 -12.40844 -12.27408 -12.03057 -11.75603 -11.41299 -11.14797 -10.71786 -10.57658 -10.04112 -9.33311 -9.13673 -8.14533 -6.32774 -0.83578 0.01870 0.90844 1.33239 1.38550 1.40093 1.46889 1.71915 1.83630 2.18507 2.32903 2.37726 2.55083 3.13685 3.38923 3.61985 3.82647 3.84018 3.93090 4.23001 4.28223 4.30372 4.44481 4.50586 4.55722 4.72444 4.77128 4.78986 5.00551 5.12506 5.17547 5.25466 5.29260 5.31760 5.38885 5.74774 5.75256 5.80165 5.95273 6.13527 6.27467 6.33163 6.43000 6.84623 7.38391 8.89756 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009738 B = 0.003965 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.708671 B = 7059.646198 C = 9110.388530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.018 3.982 3 Si 0.951 3.049 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.070 0.930 9 C 0.201 3.799 10 N -0.542 5.542 11 C 0.135 3.865 12 C -0.012 4.012 13 C -0.209 4.209 14 C -0.221 4.221 15 C -0.062 4.062 16 O -0.200 6.200 17 C 0.126 3.874 18 C 0.063 3.937 19 C -0.227 4.227 20 C -0.077 4.077 21 C -0.603 4.603 22 S 2.774 3.226 23 N -1.224 6.224 24 O -0.985 6.985 25 O -0.971 6.971 26 O -0.128 6.128 27 H 0.262 0.738 28 H 0.008 0.992 29 H -0.001 1.001 30 H 0.128 0.872 31 H 0.053 0.947 32 H 0.163 0.837 33 H 0.173 0.827 34 H 0.225 0.775 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.152 0.848 38 H 0.187 0.813 39 H 0.432 0.568 40 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.905 -11.157 -6.307 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.182 4.182 3 Si 0.777 3.223 4 H -0.187 1.187 5 H -0.217 1.217 6 H -0.197 1.197 7 C -0.588 4.588 8 H 0.088 0.912 9 C 0.075 3.925 10 N -0.266 5.266 11 C 0.008 3.992 12 C -0.063 4.063 13 C -0.229 4.229 14 C -0.239 4.239 15 C -0.129 4.129 16 O -0.097 6.097 17 C -0.001 4.001 18 C 0.008 3.992 19 C -0.248 4.248 20 C -0.098 4.098 21 C -0.732 4.732 22 S 2.855 3.145 23 N -0.908 5.908 24 O -0.974 6.974 25 O -0.960 6.960 26 O -0.022 6.022 27 H 0.071 0.929 28 H 0.026 0.974 29 H 0.017 0.983 30 H 0.146 0.854 31 H 0.071 0.929 32 H 0.181 0.819 33 H 0.190 0.810 34 H 0.241 0.759 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.170 0.830 38 H 0.204 0.796 39 H 0.262 0.738 40 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 7.635 -11.863 -6.020 15.339 hybrid contribution 0.645 2.593 0.199 2.680 sum 8.279 -9.270 -5.822 13.725 Atomic orbital electron populations 1.70091 1.07813 1.27683 1.50802 1.25729 0.95316 1.02591 0.94546 0.85714 0.78407 0.79077 0.79129 1.18716 1.21684 1.19698 1.21810 0.93534 0.92054 1.51381 0.91181 1.19443 0.91203 0.86402 0.95435 1.62362 1.17288 1.46146 1.00822 1.20494 0.92738 1.01615 0.84314 1.22651 0.96809 0.90158 0.96668 1.21822 1.03658 0.96620 1.00767 1.22128 1.01811 0.98025 1.01972 1.24704 1.00707 0.90934 0.96575 1.84128 1.45097 1.39881 1.40571 1.20703 0.92656 1.03174 0.83592 1.23243 0.97975 0.81910 0.96042 1.22057 1.04362 1.01731 0.96623 1.22287 0.96216 0.91565 0.99757 1.35252 1.17841 1.16743 1.03390 0.99747 0.72193 0.70612 0.71986 1.52512 1.36335 1.51273 1.50679 1.93570 1.86201 1.47951 1.69664 1.93621 1.49943 1.81470 1.70988 1.84118 1.56215 1.31151 1.30738 0.92902 0.97353 0.98311 0.85434 0.92918 0.81923 0.80969 0.75909 0.89540 0.86368 0.83020 0.79580 0.73766 0.73014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.07 13.29 21.45 0.28 -53.79 16 2 C 0.02 0.97 5.46 84.65 0.46 1.43 16 3 Si 0.95 41.76 29.54 68.60 2.03 43.79 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.55 -27.90 7.29 25.60 0.19 -27.72 16 8 H 0.07 3.31 6.00 -2.91 -0.02 3.30 16 9 C 0.20 10.20 4.71 85.56 0.40 10.61 16 10 N -0.54 -21.81 4.62 -909.94 -4.21 -26.01 16 11 C 0.14 4.81 5.39 85.56 0.46 5.27 16 12 C -0.01 -0.47 6.23 24.83 0.15 -0.32 16 13 C -0.21 -6.73 10.81 22.20 0.24 -6.49 16 14 C -0.22 -6.45 10.91 22.19 0.24 -6.21 16 15 C -0.06 -1.98 12.09 66.97 0.81 -1.17 16 16 O -0.20 -8.31 10.16 -2.44 -0.02 -8.34 16 17 C 0.13 4.19 5.27 85.56 0.45 4.64 16 18 C 0.06 2.26 6.22 24.83 0.15 2.41 16 19 C -0.23 -8.22 9.40 22.19 0.21 -8.01 16 20 C -0.08 -2.37 10.63 22.19 0.24 -2.14 16 21 C -0.60 -17.84 7.33 66.97 0.49 -17.35 16 22 S 2.77 65.29 6.43 -56.49 -0.36 64.92 16 23 N -1.22 -14.67 9.55 37.02 0.35 -14.32 16 24 O -0.98 -30.56 18.02 -127.96 -2.31 -32.87 16 25 O -0.97 -27.53 17.83 -128.00 -2.28 -29.81 16 26 O -0.13 -4.35 10.65 -2.46 -0.03 -4.37 16 27 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.01 0.47 6.32 -2.38 -0.02 0.45 16 29 H 0.00 -0.08 7.12 -2.39 -0.02 -0.09 16 30 H 0.13 3.37 7.74 -2.39 -0.02 3.35 16 31 H 0.05 2.06 6.52 -2.38 -0.02 2.05 16 32 H 0.16 4.40 8.06 -2.91 -0.02 4.37 16 33 H 0.17 3.78 8.06 -2.91 -0.02 3.76 16 34 H 0.22 5.26 8.06 -2.91 -0.02 5.24 16 35 H 0.09 2.91 6.20 -2.38 -0.01 2.90 16 36 H 0.12 3.00 7.83 -2.39 -0.02 2.98 16 37 H 0.15 5.93 8.06 -2.91 -0.02 5.90 16 38 H 0.19 4.61 8.06 -2.91 -0.02 4.58 16 39 H 0.43 3.26 8.92 -96.75 -0.86 2.40 16 40 H 0.44 3.06 8.96 -96.75 -0.87 2.19 16 Total: -1.00 -79.22 357.36 -2.66 -81.88 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -0.61 Total: 23.95 kcal Atomic # 6 Polarization: -49.52 SS G_CDS: 4.50 Total: -45.02 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -3.57 Total: -94.12 kcal Atomic # 8 Polarization: -70.75 SS G_CDS: -4.64 Total: -75.39 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 65.29 SS G_CDS: -0.36 Total: 64.92 kcal Total: -79.22 -2.66 -81.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364682710.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.201 kcal (2) G-P(sol) polarization free energy of solvation -79.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds