Wall clock time and date at job start Sat Apr 11 2020 05:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00173 * 2 1 4 4 H 1.48499 * 109.46821 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46996 * 300.00353 * 3 2 1 6 6 H 1.48495 * 109.46665 * 60.00035 * 3 2 1 7 7 C 1.37876 * 119.99600 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46613 * 300.00022 * 9 7 2 11 11 N 1.46496 * 109.47428 * 179.97438 * 9 7 2 12 12 C 1.34773 * 119.99909 * 154.99906 * 11 9 7 13 13 O 1.21617 * 120.00428 * 0.02562 * 12 11 9 14 14 C 1.47320 * 120.00127 * 180.02562 * 12 11 9 15 15 C 1.37917 * 126.79989 * 0.02562 * 14 12 11 16 16 N 1.34198 * 107.89406 * 179.97438 * 15 14 12 17 17 H 0.96999 * 125.17107 * 179.97438 * 16 15 14 18 18 N 1.39782 * 109.66404 * 0.02562 * 16 15 14 19 19 C 1.31375 * 109.06864 * 359.72244 * 18 16 15 20 20 C 1.48264 * 126.50970 * 180.24396 * 19 18 16 21 21 C 1.39815 * 120.90602 * 144.92105 * 20 19 18 22 22 C 1.37969 * 119.01311 * 179.77850 * 21 20 19 23 23 N 1.31930 * 120.88693 * 0.50665 * 22 21 20 24 24 C 1.31930 * 122.01287 * 359.74314 * 23 22 21 25 25 C 1.37966 * 120.88639 * 359.97438 * 24 23 22 26 26 C 1.53006 * 109.47239 * 59.99630 * 9 7 2 27 27 F 1.39900 * 109.46764 * 60.00143 * 26 9 7 28 28 F 1.39897 * 109.47129 * 180.02562 * 26 9 7 29 29 F 1.39903 * 109.46814 * 300.00614 * 26 9 7 30 30 H 0.97006 * 120.00212 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99825 * 335.00114 * 11 9 7 32 32 H 1.08001 * 126.06112 * 359.97438 * 15 14 12 33 33 H 1.08000 * 120.49732 * 359.97438 * 21 20 19 34 34 H 1.08002 * 119.55815 * 180.22232 * 22 21 20 35 35 H 1.08004 * 119.55779 * 180.02562 * 24 23 22 36 36 H 1.08001 * 120.49261 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6239 -2.5574 0.8880 11 7 2.2028 -3.6127 -0.0027 12 6 1.8366 -4.8127 0.4895 13 8 0.7158 -4.9713 0.9341 14 6 2.7941 -5.9324 0.4891 15 6 4.0920 -5.9093 0.0233 16 7 4.6176 -7.1304 0.2067 17 1 5.5202 -7.3920 -0.0336 18 7 3.6664 -7.9684 0.7956 19 6 2.5579 -7.2903 0.9887 20 6 1.3047 -7.8021 1.5936 21 6 0.5055 -6.9799 2.3936 22 6 -0.6551 -7.4952 2.9332 23 7 -1.0078 -8.7469 2.7109 24 6 -0.2797 -9.5570 1.9665 25 6 0.8927 -9.1215 1.3840 26 6 0.3717 -2.5794 -1.2513 27 9 1.1764 -2.5045 -2.3933 28 9 -0.3282 -3.7907 -1.2521 29 9 -0.5374 -1.5159 -1.2509 30 1 -0.4851 0.8401 0.0004 31 1 3.0967 -3.4863 -0.3576 32 1 4.5963 -5.0592 -0.4119 33 1 0.7906 -5.9557 2.5838 34 1 -1.2809 -6.8668 3.5495 35 1 -0.6063 -10.5746 1.8103 36 1 1.4836 -9.7900 0.7755 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364899185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:18 Heat of formation + Delta-G solvation = -56.972173 kcal Electronic energy + Delta-G solvation = -29837.948968 eV Core-core repulsion = 25102.761857 eV Total energy + Delta-G solvation = -4735.187111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.36993 -46.02619 -45.63498 -41.27005 -39.64749 -38.59908 -34.79268 -33.56888 -32.66861 -31.10608 -30.59624 -30.52693 -28.08650 -24.63851 -24.26689 -23.48451 -23.03513 -21.35767 -20.38234 -19.66326 -18.73633 -17.21266 -16.82796 -16.66305 -16.56977 -16.22987 -15.97300 -15.68801 -15.52946 -14.98285 -14.87178 -14.30685 -13.99774 -13.59999 -13.57716 -13.47907 -13.09970 -12.93705 -12.73837 -12.51804 -12.42123 -12.30515 -12.00650 -11.84538 -11.62754 -11.26988 -11.09613 -10.90861 -10.82485 -10.48129 -10.45365 -9.70434 -9.56166 -9.29464 -9.16015 -8.87766 -8.77679 -8.64521 -8.28429 -6.28750 -4.53108 0.94213 1.38189 1.48212 2.32911 2.51167 3.13831 3.21209 3.24146 3.69871 3.77710 4.03173 4.14616 4.21730 4.49116 4.55247 4.63242 4.88873 4.91040 5.12849 5.25760 5.28495 5.40472 5.45645 5.78692 5.82145 5.83964 5.90563 6.04192 6.18464 6.30570 6.46608 6.85982 6.89061 6.91953 7.10866 7.30217 7.41956 7.57810 8.12924 8.25578 8.44509 8.82836 9.15147 10.62803 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.003812 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.107527 B = 7344.409962 C = 8150.078933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.066 3.934 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.247 3.753 10 H 0.088 0.912 11 N -0.706 5.706 12 C 0.581 3.419 13 O -0.529 6.529 14 C -0.263 4.263 15 C 0.105 3.895 16 N -0.465 5.465 17 H 0.444 0.556 18 N -0.280 5.280 19 C 0.164 3.836 20 C 0.017 3.983 21 C -0.098 4.098 22 C 0.090 3.910 23 N -0.481 5.481 24 C 0.082 3.918 25 C -0.145 4.145 26 C 0.416 3.584 27 F -0.210 7.210 28 F -0.216 7.216 29 F -0.137 7.137 30 H 0.268 0.732 31 H 0.395 0.605 32 H 0.192 0.808 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.324 -11.563 0.884 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.144 4.144 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.590 4.590 8 H 0.095 0.905 9 C 0.142 3.858 10 H 0.105 0.895 11 N -0.355 5.355 12 C 0.368 3.632 13 O -0.407 6.407 14 C -0.279 4.279 15 C -0.044 4.044 16 N -0.171 5.171 17 H 0.288 0.712 18 N -0.101 5.101 19 C -0.004 4.004 20 C 0.007 3.993 21 C -0.119 4.119 22 C -0.066 4.066 23 N -0.190 5.190 24 C -0.075 4.075 25 C -0.166 4.166 26 C 0.360 3.640 27 F -0.192 7.192 28 F -0.198 7.198 29 F -0.118 7.118 30 H 0.079 0.921 31 H 0.228 0.772 32 H 0.209 0.791 33 H 0.176 0.824 34 H 0.176 0.824 35 H 0.171 0.829 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.124 -12.945 1.671 14.870 hybrid contribution 1.724 1.973 -1.408 2.974 sum 8.848 -10.973 0.263 14.098 Atomic orbital electron populations 1.70406 1.05845 1.27323 1.43485 1.25074 0.95139 1.00106 0.94031 0.86174 0.79742 0.82059 0.77937 1.19457 1.20583 1.20530 1.20887 0.93742 0.88077 1.56280 0.90460 1.19738 0.88669 0.85607 0.91814 0.89456 1.45921 1.17002 1.10347 1.62236 1.17194 0.86384 0.81544 0.78110 1.90743 1.20584 1.82576 1.46755 1.21500 0.95308 0.95677 1.15376 1.23104 0.94002 0.89977 0.97336 1.45909 1.14362 1.07772 1.49045 0.71197 1.77290 0.98467 1.16196 1.18178 1.21657 0.92192 0.90451 0.96121 1.17949 0.91240 0.93461 0.96636 1.22677 0.94124 1.01212 0.93926 1.22701 0.94641 0.91409 0.97861 1.67576 1.32319 1.05043 1.14111 1.22533 0.91305 0.99452 0.94233 1.22129 0.98238 0.95172 1.01075 1.23136 0.80903 0.72862 0.87080 1.92983 1.74420 1.96192 1.55647 1.93081 1.81429 1.48336 1.96959 1.93407 1.68399 1.53812 1.96191 0.92113 0.77178 0.79142 0.82379 0.82415 0.82888 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.20 9.50 55.43 0.53 -21.67 16 2 C 0.07 1.64 5.20 -17.82 -0.09 1.54 16 3 Si 0.91 19.30 29.54 -169.99 -5.02 14.28 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.55 -13.31 8.46 -34.44 -0.29 -13.60 16 8 H 0.08 1.74 7.74 -52.49 -0.41 1.33 16 9 C 0.25 5.78 2.21 -69.08 -0.15 5.62 16 10 H 0.09 2.28 7.58 -51.93 -0.39 1.89 16 11 N -0.71 -13.26 4.97 -56.05 -0.28 -13.54 16 12 C 0.58 10.80 7.24 -12.57 -0.09 10.71 16 13 O -0.53 -11.30 11.07 5.26 0.06 -11.24 16 14 C -0.26 -3.96 6.28 -102.95 -0.65 -4.61 16 15 C 0.11 1.10 11.50 -16.63 -0.19 0.91 16 16 N -0.46 -4.42 7.20 30.81 0.22 -4.20 16 17 H 0.44 2.37 8.96 -182.84 -1.64 0.73 16 18 N -0.28 -3.69 12.64 34.57 0.44 -3.25 16 19 C 0.16 2.49 6.98 -80.57 -0.56 1.93 16 20 C 0.02 0.27 5.75 -104.60 -0.60 -0.33 16 21 C -0.10 -1.57 7.89 -39.09 -0.31 -1.88 16 22 C 0.09 1.35 11.17 -17.61 -0.20 1.15 16 23 N -0.48 -7.19 10.35 -13.34 -0.14 -7.33 16 24 C 0.08 1.06 11.17 -17.61 -0.20 0.86 16 25 C -0.14 -1.94 9.88 -39.10 -0.39 -2.33 16 26 C 0.42 10.30 2.81 37.16 0.10 10.41 16 27 F -0.21 -5.01 16.94 2.25 0.04 -4.97 16 28 F -0.22 -5.38 15.67 2.25 0.04 -5.34 16 29 F -0.14 -3.70 12.91 2.25 0.03 -3.67 16 30 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.39 6.12 7.49 -40.82 -0.31 5.81 16 32 H 0.19 1.25 7.48 -52.49 -0.39 0.86 16 33 H 0.16 2.70 5.78 -52.49 -0.30 2.39 16 34 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 35 H 0.15 1.47 8.06 -52.48 -0.42 1.05 16 36 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 326.19 15.07 4.92 4.92 Total: -1.00 -32.03 326.19 -6.63 -38.66 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -3.84 Total: 6.97 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: -3.61 Total: 10.39 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.77 Total: -50.00 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.06 Total: -11.24 kcal Atomic # 9 Polarization: -14.09 SS G_CDS: 0.10 Total: -13.98 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.03 -6.63 -38.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364899185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.308 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds