Wall clock time and date at job start Sat Apr 11 2020 05:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00173 * 2 1 4 4 H 1.48499 * 109.46821 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46996 * 300.00353 * 3 2 1 6 6 H 1.48495 * 109.46665 * 60.00035 * 3 2 1 7 7 C 1.37876 * 119.99600 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46613 * 300.00022 * 9 7 2 11 11 N 1.46496 * 109.47428 * 179.97438 * 9 7 2 12 12 C 1.34773 * 119.99909 * 154.99906 * 11 9 7 13 13 O 1.21617 * 120.00428 * 0.02562 * 12 11 9 14 14 C 1.47320 * 120.00127 * 180.02562 * 12 11 9 15 15 C 1.37917 * 126.79989 * 0.02562 * 14 12 11 16 16 N 1.34198 * 107.89406 * 179.97438 * 15 14 12 17 17 H 0.96999 * 125.17107 * 179.97438 * 16 15 14 18 18 N 1.39782 * 109.66404 * 0.02562 * 16 15 14 19 19 C 1.31375 * 109.06864 * 359.72244 * 18 16 15 20 20 C 1.48264 * 126.50970 * 180.24396 * 19 18 16 21 21 C 1.39815 * 120.90602 * 144.92105 * 20 19 18 22 22 C 1.37969 * 119.01311 * 179.77850 * 21 20 19 23 23 N 1.31930 * 120.88693 * 0.50665 * 22 21 20 24 24 C 1.31930 * 122.01287 * 359.74314 * 23 22 21 25 25 C 1.37966 * 120.88639 * 359.97438 * 24 23 22 26 26 C 1.53006 * 109.47239 * 59.99630 * 9 7 2 27 27 F 1.39900 * 109.46764 * 60.00143 * 26 9 7 28 28 F 1.39897 * 109.47129 * 180.02562 * 26 9 7 29 29 F 1.39903 * 109.46814 * 300.00614 * 26 9 7 30 30 H 0.97006 * 120.00212 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99825 * 335.00114 * 11 9 7 32 32 H 1.08001 * 126.06112 * 359.97438 * 15 14 12 33 33 H 1.08000 * 120.49732 * 359.97438 * 21 20 19 34 34 H 1.08002 * 119.55815 * 180.22232 * 22 21 20 35 35 H 1.08004 * 119.55779 * 180.02562 * 24 23 22 36 36 H 1.08001 * 120.49261 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6239 -2.5574 0.8880 11 7 2.2028 -3.6127 -0.0027 12 6 1.8366 -4.8127 0.4895 13 8 0.7158 -4.9713 0.9341 14 6 2.7941 -5.9324 0.4891 15 6 4.0920 -5.9093 0.0233 16 7 4.6176 -7.1304 0.2067 17 1 5.5202 -7.3920 -0.0336 18 7 3.6664 -7.9684 0.7956 19 6 2.5579 -7.2903 0.9887 20 6 1.3047 -7.8021 1.5936 21 6 0.5055 -6.9799 2.3936 22 6 -0.6551 -7.4952 2.9332 23 7 -1.0078 -8.7469 2.7109 24 6 -0.2797 -9.5570 1.9665 25 6 0.8927 -9.1215 1.3840 26 6 0.3717 -2.5794 -1.2513 27 9 1.1764 -2.5045 -2.3933 28 9 -0.3282 -3.7907 -1.2521 29 9 -0.5374 -1.5159 -1.2509 30 1 -0.4851 0.8401 0.0004 31 1 3.0967 -3.4863 -0.3576 32 1 4.5963 -5.0592 -0.4119 33 1 0.7906 -5.9557 2.5838 34 1 -1.2809 -6.8668 3.5495 35 1 -0.6063 -10.5746 1.8103 36 1 1.4836 -9.7900 0.7755 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364899185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:17 Heat of formation + Delta-G solvation = -79.476607 kcal Electronic energy + Delta-G solvation = -29838.924833 eV Core-core repulsion = 25102.761857 eV Total energy + Delta-G solvation = -4736.162976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.36513 -48.00335 -47.67860 -42.28936 -40.72462 -40.05537 -36.45872 -34.72572 -34.34919 -32.21065 -31.84260 -31.55910 -29.68870 -26.55303 -25.36580 -24.67707 -24.29403 -22.94005 -21.53656 -21.02437 -19.90220 -18.96437 -18.73195 -18.59168 -17.79050 -17.62128 -17.22785 -17.02810 -16.83631 -16.62499 -16.02294 -15.72042 -15.14067 -14.98086 -14.93454 -14.80119 -14.65986 -14.58777 -14.41706 -14.27807 -14.20783 -14.01431 -13.89081 -13.64384 -13.02342 -12.76986 -12.64307 -12.58527 -12.19835 -12.11618 -11.53638 -11.48562 -10.91473 -10.66036 -10.46214 -10.22371 -10.05751 -9.89441 -9.69572 -8.17307 -6.47446 -0.17011 0.28638 0.51077 1.20366 1.48940 1.50611 1.62516 1.67823 2.23428 2.34945 2.47871 2.64570 2.93139 2.99447 3.16258 3.53339 3.61471 3.82066 3.91199 4.00452 4.08673 4.15967 4.22794 4.25197 4.36852 4.45685 4.72056 4.79868 4.96979 5.01479 5.21118 5.35956 5.48249 5.60462 5.69816 5.78180 6.16845 6.36481 6.57703 6.83020 7.02981 7.22149 7.45120 8.75439 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.003812 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.107527 B = 7344.409962 C = 8150.078933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.015 3.985 3 Si 0.980 3.020 4 H -0.252 1.252 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.557 4.557 8 H 0.097 0.903 9 C 0.256 3.744 10 H 0.050 0.950 11 N -0.700 5.700 12 C 0.578 3.422 13 O -0.565 6.565 14 C -0.306 4.306 15 C 0.145 3.855 16 N -0.439 5.439 17 H 0.465 0.535 18 N -0.287 5.287 19 C 0.149 3.851 20 C 0.002 3.998 21 C -0.117 4.117 22 C 0.080 3.920 23 N -0.498 5.498 24 C 0.084 3.916 25 C -0.144 4.144 26 C 0.412 3.588 27 F -0.204 7.204 28 F -0.220 7.220 29 F -0.153 7.153 30 H 0.267 0.733 31 H 0.412 0.588 32 H 0.237 0.763 33 H 0.139 0.861 34 H 0.168 0.832 35 H 0.190 0.810 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.387 -12.383 -0.020 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.175 1.175 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.593 4.593 8 H 0.114 0.886 9 C 0.149 3.851 10 H 0.068 0.932 11 N -0.350 5.350 12 C 0.367 3.633 13 O -0.446 6.446 14 C -0.321 4.321 15 C -0.007 4.007 16 N -0.147 5.147 17 H 0.315 0.685 18 N -0.109 5.109 19 C -0.020 4.020 20 C -0.009 4.009 21 C -0.138 4.138 22 C -0.076 4.076 23 N -0.208 5.208 24 C -0.073 4.073 25 C -0.164 4.164 26 C 0.356 3.644 27 F -0.186 7.186 28 F -0.202 7.202 29 F -0.134 7.134 30 H 0.077 0.923 31 H 0.249 0.751 32 H 0.253 0.747 33 H 0.156 0.844 34 H 0.185 0.815 35 H 0.207 0.793 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 10.262 -13.813 0.764 17.224 hybrid contribution 0.833 2.115 -1.161 2.553 sum 11.095 -11.697 -0.397 16.127 Atomic orbital electron populations 1.70545 1.07536 1.27945 1.44919 1.25975 0.95804 1.03636 0.93629 0.85154 0.79372 0.77690 0.77359 1.17489 1.21077 1.20668 1.21265 0.94656 0.88129 1.55281 0.88552 1.19290 0.88875 0.87309 0.89612 0.93210 1.45677 1.17019 1.09485 1.62827 1.17694 0.86625 0.81987 0.76950 1.90733 1.22546 1.83177 1.48112 1.21219 0.96813 0.94682 1.19369 1.23637 0.92077 0.90931 0.94018 1.45962 1.14743 1.07064 1.46958 0.68508 1.77241 0.98373 1.16754 1.18515 1.21684 0.92641 0.90815 0.96814 1.18228 0.91754 0.94324 0.96563 1.22538 0.95160 1.00641 0.95439 1.22877 0.94622 0.91926 0.98173 1.67640 1.33010 1.05067 1.15078 1.23158 0.90738 1.00596 0.92777 1.22388 0.98484 0.94619 1.00948 1.23399 0.80878 0.72263 0.87861 1.92979 1.74086 1.96145 1.55355 1.93069 1.81637 1.48509 1.97021 1.93375 1.69088 1.54623 1.96322 0.92341 0.75131 0.74652 0.84381 0.81478 0.79305 0.82723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.39 9.50 21.45 0.20 -47.19 16 2 C 0.01 0.73 5.20 84.66 0.44 1.17 16 3 Si 0.98 38.91 29.54 68.60 2.03 40.94 16 4 H -0.25 -9.14 7.11 99.48 0.71 -8.44 16 5 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.28 -11.12 7.11 99.48 0.71 -10.42 16 7 C -0.56 -26.43 8.46 25.60 0.22 -26.21 16 8 H 0.10 4.10 7.74 -2.91 -0.02 4.08 16 9 C 0.26 12.17 2.21 44.25 0.10 12.27 16 10 H 0.05 2.75 7.58 -2.39 -0.02 2.73 16 11 N -0.70 -25.90 4.97 -449.48 -2.24 -28.14 16 12 C 0.58 21.70 7.24 86.63 0.63 22.32 16 13 O -0.57 -25.40 11.07 -4.08 -0.05 -25.44 16 14 C -0.31 -8.81 6.28 -18.78 -0.12 -8.93 16 15 C 0.15 2.49 11.50 84.26 0.97 3.46 16 16 N -0.44 -6.64 7.20 -56.43 -0.41 -7.04 16 17 H 0.47 2.77 8.96 -213.53 -1.91 0.85 16 18 N -0.29 -6.88 12.64 -44.54 -0.56 -7.45 16 19 C 0.15 4.37 6.98 44.07 0.31 4.68 16 20 C 0.00 0.05 5.75 -19.85 -0.11 -0.07 16 21 C -0.12 -3.92 7.89 22.59 0.18 -3.75 16 22 C 0.08 2.49 11.17 84.61 0.95 3.43 16 23 N -0.50 -14.92 10.35 -196.13 -2.03 -16.95 16 24 C 0.08 2.09 11.17 84.61 0.95 3.03 16 25 C -0.14 -3.70 9.88 22.58 0.22 -3.48 16 26 C 0.41 20.75 2.81 71.98 0.20 20.95 16 27 F -0.20 -9.60 16.94 44.97 0.76 -8.84 16 28 F -0.22 -11.27 15.67 44.97 0.70 -10.56 16 29 F -0.15 -8.49 12.91 44.97 0.58 -7.91 16 30 H 0.27 13.76 8.31 -92.70 -0.77 12.99 16 31 H 0.41 11.84 7.49 -92.71 -0.69 11.14 16 32 H 0.24 1.76 7.48 -2.91 -0.02 1.74 16 33 H 0.14 5.15 5.78 -2.91 -0.02 5.13 16 34 H 0.17 4.60 8.06 -2.91 -0.02 4.57 16 35 H 0.19 3.15 8.06 -2.91 -0.02 3.12 16 36 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -72.25 326.19 2.51 -69.74 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -1.41 Total: 19.96 kcal Atomic # 6 Polarization: 23.97 SS G_CDS: 4.92 Total: 28.89 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -5.03 Total: -106.77 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.05 Total: -25.44 kcal Atomic # 9 Polarization: -29.37 SS G_CDS: 2.05 Total: -27.32 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -72.25 2.51 -69.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364899185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.735 kcal (2) G-P(sol) polarization free energy of solvation -72.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds