Wall clock time and date at job start Sat Apr 11 2020 05:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00425 * 2 1 4 4 H 1.48491 * 109.47249 * 264.81520 * 3 2 1 5 5 H 1.48502 * 109.47022 * 24.81371 * 3 2 1 6 6 H 1.48493 * 109.47128 * 144.80935 * 3 2 1 7 7 C 1.37880 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00008 * 4.87908 * 7 2 1 9 9 C 1.50694 * 119.99820 * 184.87566 * 7 2 1 10 10 H 1.08998 * 109.47478 * 334.93999 * 9 7 2 11 11 N 1.46494 * 109.47196 * 94.94736 * 9 7 2 12 12 C 1.34777 * 120.00064 * 204.99841 * 11 9 7 13 13 O 1.21620 * 120.00131 * 359.97438 * 12 11 9 14 14 C 1.47324 * 120.00046 * 179.97438 * 12 11 9 15 15 C 1.37916 * 126.80169 * 359.97438 * 14 12 11 16 16 N 1.34199 * 107.88664 * 180.02562 * 15 14 12 17 17 H 0.97003 * 125.16429 * 179.97438 * 16 15 14 18 18 N 1.39772 * 109.67230 * 359.97438 * 16 15 14 19 19 C 1.31379 * 109.06708 * 359.97438 * 18 16 15 20 20 C 1.48270 * 126.51047 * 179.97438 * 19 18 16 21 21 C 1.39809 * 120.90723 * 144.74490 * 20 19 18 22 22 C 1.37972 * 119.01129 * 179.78045 * 21 20 19 23 23 N 1.31927 * 120.88760 * 0.51042 * 22 21 20 24 24 C 1.31929 * 122.01367 * 359.74538 * 23 22 21 25 25 C 1.37965 * 120.88985 * 359.97438 * 24 23 22 26 26 C 1.53006 * 109.47043 * 214.94373 * 9 7 2 27 27 F 1.39894 * 109.47254 * 294.93944 * 26 9 7 28 28 F 1.39898 * 109.47134 * 54.93930 * 26 9 7 29 29 F 1.39903 * 109.47263 * 174.93467 * 26 9 7 30 30 H 0.97004 * 119.99776 * 359.97438 * 1 2 3 31 31 H 0.96999 * 120.00388 * 24.99746 * 11 9 7 32 32 H 1.07997 * 126.05965 * 359.97438 * 15 14 12 33 33 H 1.08000 * 120.49260 * 0.03095 * 21 20 19 34 34 H 1.08006 * 119.55357 * 180.22938 * 22 21 20 35 35 H 1.07994 * 119.55346 * 180.02562 * 24 23 22 36 36 H 1.07998 * 120.49863 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6063 1.9830 -1.3942 5 1 1.3962 2.6818 0.5876 6 1 3.4876 1.4741 0.8068 7 6 2.0045 -1.1941 0.0005 8 1 1.4674 -2.1277 -0.0786 9 6 3.5073 -1.1965 0.1115 10 1 3.9003 -0.2487 -0.2564 11 7 3.8932 -1.3741 1.5134 12 6 5.0873 -0.9231 1.9461 13 8 5.8447 -0.3690 1.1724 14 6 5.4751 -1.1012 3.3561 15 6 4.7305 -1.7045 4.3479 16 7 5.4435 -1.6592 5.4839 17 1 5.1543 -2.0132 6.3395 18 7 6.6661 -1.0245 5.2471 19 6 6.7294 -0.6730 3.9828 20 6 7.8548 0.0258 3.3168 21 6 8.1955 -0.2620 1.9917 22 6 9.2469 0.4150 1.4090 23 7 9.9325 1.3148 2.0878 24 6 9.6471 1.6121 3.3411 25 6 8.6078 0.9866 3.9984 26 6 4.0786 -2.3440 -0.7240 27 9 3.6667 -3.5659 -0.1814 28 9 3.6154 -2.2383 -2.0399 29 9 5.4759 -2.2769 -0.7148 30 1 -0.4850 0.8401 0.0004 31 1 3.2894 -1.8164 2.1305 32 1 3.7475 -2.1361 4.2313 33 1 7.6412 -1.0004 1.4314 34 1 9.5153 0.2022 0.3846 35 1 10.2343 2.3558 3.8591 36 1 8.3794 1.2352 5.0243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364899214.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:20 Heat of formation + Delta-G solvation = -81.004543 kcal Electronic energy + Delta-G solvation = -29929.643293 eV Core-core repulsion = 25193.414061 eV Total energy + Delta-G solvation = -4736.229232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.09734 -46.62333 -46.57529 -41.26998 -39.68272 -38.67066 -34.91689 -33.58841 -32.66669 -31.15449 -30.79119 -30.55033 -28.61282 -25.01040 -24.30188 -23.51142 -23.04428 -21.31090 -20.41882 -19.72140 -18.84293 -17.83918 -17.55452 -16.81105 -16.69746 -16.53975 -16.05181 -15.98238 -15.55455 -15.20811 -14.95382 -14.17104 -13.96960 -13.85306 -13.62714 -13.53234 -13.47975 -13.28903 -13.08716 -13.03254 -12.79321 -12.77681 -12.71397 -12.52531 -11.88803 -11.64190 -11.21067 -11.11194 -10.76049 -10.48684 -10.19239 -9.88353 -9.66927 -9.33979 -9.18934 -9.04164 -8.89787 -8.68767 -8.42251 -6.59740 -4.75417 0.91419 1.34119 1.48825 2.31088 2.51529 3.07593 3.17279 3.26849 3.56670 3.66481 3.94664 4.00143 4.05479 4.17475 4.50007 4.58944 4.80931 4.90785 5.09528 5.11793 5.13864 5.24095 5.26258 5.29078 5.38479 5.61422 5.76814 5.86963 6.01551 6.22850 6.33283 6.44075 6.82276 6.83626 6.92385 7.07976 7.30887 7.78815 8.08631 8.24593 8.45340 8.78263 8.96434 10.48410 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.011619 B = 0.004469 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.177998 B = 6263.480441 C = 6516.766127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.102 3.898 3 Si 0.865 3.135 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.252 1.252 7 C -0.538 4.538 8 H 0.094 0.906 9 C 0.205 3.795 10 H 0.092 0.908 11 N -0.707 5.707 12 C 0.576 3.424 13 O -0.538 6.538 14 C -0.267 4.267 15 C 0.108 3.892 16 N -0.464 5.464 17 H 0.444 0.556 18 N -0.280 5.280 19 C 0.162 3.838 20 C 0.018 3.982 21 C -0.100 4.100 22 C 0.089 3.911 23 N -0.481 5.481 24 C 0.082 3.918 25 C -0.145 4.145 26 C 0.438 3.562 27 F -0.193 7.193 28 F -0.181 7.181 29 F -0.195 7.195 30 H 0.276 0.724 31 H 0.397 0.603 32 H 0.194 0.806 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.704 -2.459 9.886 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.109 4.109 3 Si 0.689 3.311 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.176 1.176 7 C -0.575 4.575 8 H 0.112 0.888 9 C 0.102 3.898 10 H 0.109 0.891 11 N -0.358 5.358 12 C 0.363 3.637 13 O -0.417 6.417 14 C -0.282 4.282 15 C -0.042 4.042 16 N -0.170 5.170 17 H 0.288 0.712 18 N -0.101 5.101 19 C -0.006 4.006 20 C 0.008 3.992 21 C -0.121 4.121 22 C -0.067 4.067 23 N -0.191 5.191 24 C -0.075 4.075 25 C -0.166 4.166 26 C 0.382 3.618 27 F -0.175 7.175 28 F -0.163 7.163 29 F -0.177 7.177 30 H 0.086 0.914 31 H 0.233 0.767 32 H 0.210 0.790 33 H 0.177 0.823 34 H 0.175 0.825 35 H 0.171 0.829 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.315 -1.565 10.010 15.188 hybrid contribution -1.478 -0.218 0.407 1.549 sum 9.837 -1.784 10.418 14.438 Atomic orbital electron populations 1.69853 1.06432 1.28457 1.44371 1.24983 0.94786 0.99255 0.91848 0.86978 0.80973 0.82820 0.80305 1.18937 1.20592 1.17561 1.20718 0.86284 0.96375 1.54157 0.88847 1.20004 0.97771 0.92276 0.79752 0.89066 1.47285 1.17077 1.59214 1.12214 1.17479 0.82080 0.78655 0.85487 1.90708 1.51025 1.43590 1.56376 1.21564 0.96627 1.14051 0.95948 1.23145 0.97888 0.97147 0.85994 1.45916 1.13181 1.47000 1.10945 0.71162 1.77280 1.00496 1.16309 1.16058 1.21662 0.92960 0.96173 0.89831 1.17965 0.92174 0.95480 0.93604 1.22702 0.95449 1.00469 0.93432 1.22691 0.91986 0.92163 0.99893 1.67573 1.28723 1.14496 1.08299 1.22533 0.95496 0.98622 0.90879 1.22140 0.96468 0.96917 1.01065 1.21712 0.74940 0.85154 0.79967 1.93063 1.90285 1.48218 1.85914 1.93112 1.88712 1.96179 1.38288 1.93138 1.31475 1.96528 1.96545 0.91404 0.76744 0.78967 0.82281 0.82483 0.82872 0.84863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.79 13.96 55.43 0.77 -22.01 16 2 C 0.10 2.55 5.47 -17.82 -0.10 2.46 16 3 Si 0.86 19.63 26.99 -169.99 -4.59 15.04 16 4 H -0.26 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.25 -5.81 6.82 56.52 0.39 -5.43 16 7 C -0.54 -13.04 8.52 -34.44 -0.29 -13.33 16 8 H 0.09 2.45 8.00 -52.49 -0.42 2.03 16 9 C 0.21 4.46 1.71 -69.09 -0.12 4.34 16 10 H 0.09 2.13 4.73 -51.93 -0.25 1.88 16 11 N -0.71 -13.14 4.90 -56.05 -0.27 -13.42 16 12 C 0.58 10.64 7.36 -12.57 -0.09 10.55 16 13 O -0.54 -11.18 11.06 5.26 0.06 -11.12 16 14 C -0.27 -4.09 6.28 -102.95 -0.65 -4.73 16 15 C 0.11 1.18 11.50 -16.64 -0.19 0.99 16 16 N -0.46 -4.59 7.20 30.81 0.22 -4.37 16 17 H 0.44 2.55 8.96 -182.84 -1.64 0.91 16 18 N -0.28 -3.77 12.65 34.57 0.44 -3.33 16 19 C 0.16 2.49 6.98 -80.56 -0.56 1.93 16 20 C 0.02 0.28 5.75 -104.59 -0.60 -0.32 16 21 C -0.10 -1.58 7.90 -39.09 -0.31 -1.89 16 22 C 0.09 1.31 11.17 -17.61 -0.20 1.11 16 23 N -0.48 -7.11 10.35 -13.35 -0.14 -7.25 16 24 C 0.08 1.05 11.17 -17.61 -0.20 0.85 16 25 C -0.14 -1.94 9.88 -39.09 -0.39 -2.32 16 26 C 0.44 9.24 2.83 37.16 0.11 9.35 16 27 F -0.19 -3.91 16.93 2.25 0.04 -3.87 16 28 F -0.18 -3.97 16.89 2.25 0.04 -3.93 16 29 F -0.20 -4.03 15.83 2.25 0.04 -3.99 16 30 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.40 6.35 7.55 -40.82 -0.31 6.04 16 32 H 0.19 1.40 7.48 -52.49 -0.39 1.01 16 33 H 0.16 2.72 5.78 -52.49 -0.30 2.42 16 34 H 0.16 1.96 8.06 -52.48 -0.42 1.54 16 35 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 329.30 15.07 4.96 4.96 Total: -1.00 -31.00 329.30 -5.75 -36.75 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -3.73 Total: 7.56 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: -3.59 Total: 8.98 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 1.02 Total: -50.38 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.06 Total: -11.12 kcal Atomic # 9 Polarization: -11.90 SS G_CDS: 0.11 Total: -11.79 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.59 Total: 15.04 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.00 -5.75 -36.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364899214.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.253 kcal (2) G-P(sol) polarization free energy of solvation -31.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds