Wall clock time and date at job start Sat Apr 11 2020 05:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99846 * 2 1 4 4 H 1.48507 * 109.46980 * 270.00216 * 3 2 1 5 5 H 1.48505 * 109.46981 * 29.99512 * 3 2 1 6 6 H 1.48492 * 109.47356 * 150.00145 * 3 2 1 7 7 C 1.37868 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00436 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00039 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.46740 * 59.99870 * 9 7 2 11 11 N 1.46498 * 109.47089 * 180.02562 * 9 7 2 12 12 C 1.34777 * 119.99729 * 205.00148 * 11 9 7 13 13 O 1.21556 * 119.99891 * 359.97438 * 12 11 9 14 14 C 1.47863 * 120.00018 * 179.97438 * 12 11 9 15 15 C 1.39609 * 120.11158 * 359.97438 * 14 12 11 16 16 C 1.37983 * 119.98463 * 179.97438 * 15 14 12 17 17 C 1.38269 * 120.21068 * 359.97438 * 16 15 14 18 18 C 1.38899 * 120.22999 * 0.02738 * 17 16 15 19 19 N 1.40275 * 119.99291 * 179.97438 * 18 17 16 20 20 C 1.36121 * 125.93949 * 4.71583 * 19 18 17 21 21 C 1.35367 * 106.04790 * 179.84587 * 20 19 18 22 22 N 1.33781 * 106.53644 * 0.40825 * 21 20 19 23 23 N 1.28600 * 109.06263 * 359.73592 * 22 21 20 24 24 C 1.38580 * 120.01585 * 0.23010 * 18 17 16 25 25 C 1.52998 * 109.46759 * 300.00111 * 9 7 2 26 26 F 1.39905 * 109.47083 * 299.99137 * 25 9 7 27 27 F 1.39897 * 109.47555 * 59.99733 * 25 9 7 28 28 F 1.39899 * 109.46908 * 180.02562 * 25 9 7 29 29 H 0.96994 * 119.99966 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00678 * 24.99278 * 11 9 7 31 31 H 1.08005 * 120.01016 * 359.97157 * 15 14 12 32 32 H 1.07993 * 119.89314 * 179.97438 * 16 15 14 33 33 H 1.08004 * 119.87656 * 180.02562 * 17 16 15 34 34 H 1.07997 * 126.97315 * 0.02562 * 20 19 18 35 35 H 1.08001 * 126.73169 * 180.14493 * 21 20 19 36 36 H 1.07999 * 120.10758 * 179.74822 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6249 -2.5571 -0.8897 11 7 2.2032 -3.6126 0.0018 12 6 1.8375 -4.8124 -0.4913 13 8 0.7176 -4.9708 -0.9366 14 6 2.7986 -5.9361 -0.4906 15 6 4.0856 -5.7566 0.0197 16 6 4.9802 -6.8072 0.0196 17 6 4.6063 -8.0393 -0.4844 18 6 3.3281 -8.2276 -0.9943 19 7 2.9543 -9.4796 -1.5048 20 6 3.7103 -10.6112 -1.4786 21 6 2.9647 -11.5732 -2.0713 22 7 1.8143 -10.9943 -2.4333 23 7 1.8388 -9.7567 -2.0846 24 6 2.4238 -7.1776 -1.0037 25 6 0.3711 -2.5799 1.2494 26 9 1.1750 -2.5056 2.3920 27 9 -0.5381 -1.5166 1.2489 28 9 -0.3279 -3.7917 1.2498 29 1 -0.4850 0.8400 -0.0004 30 1 3.0968 -3.4863 0.3573 31 1 4.3810 -4.7957 0.4145 32 1 5.9755 -6.6666 0.4143 33 1 5.3107 -8.8580 -0.4815 34 1 4.7023 -10.7202 -1.0659 35 1 3.2455 -12.6045 -2.2258 36 1 1.4309 -7.3213 -1.4036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411545835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:26 Heat of formation + Delta-G solvation = -31.778051 kcal Electronic energy + Delta-G solvation = -29099.493765 eV Core-core repulsion = 24365.399154 eV Total energy + Delta-G solvation = -4734.094611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.42088 -46.07483 -45.68201 -43.65692 -40.16419 -38.42013 -34.94944 -34.79644 -32.73541 -31.95683 -31.04011 -30.31229 -28.37789 -24.78984 -24.63759 -24.32262 -22.73828 -21.60631 -21.33863 -20.16666 -19.11617 -17.42244 -17.05966 -16.73706 -16.70060 -16.69819 -16.42177 -16.01818 -15.33004 -15.26356 -14.93136 -14.44409 -14.41762 -14.18146 -14.03175 -13.29006 -13.08015 -12.98295 -12.58909 -12.47053 -12.40399 -12.31488 -12.18936 -12.02950 -11.88421 -11.60444 -11.29170 -11.24466 -11.21670 -10.91337 -10.89985 -10.48961 -9.77097 -9.74446 -9.56368 -9.37982 -8.95487 -8.80507 -8.42320 -6.31073 -4.56285 0.23276 0.69713 1.65190 1.95473 2.30156 2.89871 3.13623 3.19869 3.22641 3.49278 3.74006 4.03583 4.13441 4.25800 4.41525 4.49229 4.64047 4.74265 4.77510 4.85308 4.85979 4.92741 5.14121 5.28461 5.52590 5.72688 5.75842 5.78650 5.88572 5.95469 5.97725 6.12755 6.18634 6.55130 6.81571 6.98460 7.35305 7.54591 8.11134 8.20234 8.39371 8.65200 9.11944 10.60537 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.021439 B = 0.002845 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.717991 B = 9839.108730 C =10369.395751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.066 3.934 3 Si 0.916 3.084 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.245 3.755 10 H 0.088 0.912 11 N -0.702 5.702 12 C 0.546 3.454 13 O -0.521 6.521 14 C -0.099 4.099 15 C -0.076 4.076 16 C -0.104 4.104 17 C -0.100 4.100 18 C 0.107 3.893 19 N -0.239 5.239 20 C -0.052 4.052 21 C -0.046 4.046 22 N -0.265 5.265 23 N -0.071 5.071 24 C -0.044 4.044 25 C 0.417 3.583 26 F -0.209 7.209 27 F -0.135 7.135 28 F -0.217 7.217 29 H 0.269 0.731 30 H 0.398 0.602 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.137 0.863 34 H 0.194 0.806 35 H 0.195 0.805 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.520 -14.554 0.838 19.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.592 4.592 8 H 0.096 0.904 9 C 0.139 3.861 10 H 0.106 0.894 11 N -0.352 5.352 12 C 0.331 3.669 13 O -0.397 6.397 14 C -0.103 4.103 15 C -0.095 4.095 16 C -0.123 4.123 17 C -0.121 4.121 18 C 0.016 3.984 19 N -0.026 5.026 20 C -0.200 4.200 21 C -0.202 4.202 22 N -0.131 5.131 23 N -0.050 5.050 24 C -0.064 4.064 25 C 0.361 3.639 26 F -0.191 7.191 27 F -0.116 7.116 28 F -0.199 7.199 29 H 0.080 0.920 30 H 0.234 0.766 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.211 0.789 35 H 0.212 0.788 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.084 -14.023 0.049 17.874 hybrid contribution 1.820 0.432 0.924 2.086 sum 12.904 -13.591 0.972 18.766 Atomic orbital electron populations 1.70393 1.05888 1.27548 1.43219 1.25083 0.95169 1.00179 0.93943 0.86194 0.79562 0.81562 0.78419 1.20137 1.20739 1.19488 1.20846 0.93772 0.87969 1.56590 0.90358 1.19804 0.88670 0.85570 0.92010 0.89405 1.45996 1.17360 1.10301 1.61512 1.18113 0.87018 0.82712 0.79097 1.90821 1.20443 1.82752 1.45733 1.20081 0.94904 0.94340 1.00956 1.21650 0.92099 0.99942 0.95839 1.20967 1.00384 0.91446 0.99455 1.21011 0.93364 0.99115 0.98613 1.17495 0.95418 0.82361 1.03093 1.44786 1.12171 1.08393 1.37275 1.23826 1.01538 0.85927 1.08690 1.23672 0.91835 1.01571 1.03115 1.75166 1.20533 0.99180 1.18222 1.78502 1.03877 1.11055 1.11539 1.21085 1.00217 0.89752 0.95391 1.23107 0.80920 0.72895 0.87022 1.92991 1.74421 1.96190 1.55486 1.93411 1.68330 1.53713 1.96178 1.93079 1.81507 1.48342 1.96964 0.91973 0.76636 0.84045 0.83785 0.84489 0.78924 0.78834 0.82533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.42 9.50 55.43 0.53 -21.90 16 2 C 0.07 1.65 5.20 -17.82 -0.09 1.56 16 3 Si 0.92 19.42 29.54 -169.99 -5.02 14.40 16 4 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.55 -13.54 8.46 -34.44 -0.29 -13.84 16 8 H 0.08 1.77 7.74 -52.48 -0.41 1.37 16 9 C 0.24 5.85 2.21 -69.08 -0.15 5.70 16 10 H 0.09 2.36 7.58 -51.93 -0.39 1.97 16 11 N -0.70 -13.50 4.93 -55.87 -0.28 -13.78 16 12 C 0.55 10.41 7.31 -12.32 -0.09 10.32 16 13 O -0.52 -12.03 14.92 5.32 0.08 -11.95 16 14 C -0.10 -1.43 5.87 -104.99 -0.62 -2.04 16 15 C -0.08 -0.79 9.54 -39.16 -0.37 -1.16 16 16 C -0.10 -0.79 10.03 -39.66 -0.40 -1.19 16 17 C -0.10 -0.80 9.45 -39.33 -0.37 -1.17 16 18 C 0.11 1.24 6.67 -83.62 -0.56 0.68 16 19 N -0.24 -2.89 3.56 -10.50 -0.04 -2.93 16 20 C -0.05 -0.44 10.91 -16.67 -0.18 -0.62 16 21 C -0.05 -0.43 12.05 -17.73 -0.21 -0.65 16 22 N -0.26 -3.70 12.39 30.24 0.37 -3.33 16 23 N -0.07 -1.07 12.42 60.35 0.75 -0.33 16 24 C -0.04 -0.63 9.16 -39.00 -0.36 -0.98 16 25 C 0.42 10.42 2.81 37.16 0.10 10.52 16 26 F -0.21 -4.98 16.94 2.25 0.04 -4.94 16 27 F -0.14 -3.67 12.91 2.25 0.03 -3.64 16 28 F -0.22 -5.44 15.67 2.25 0.04 -5.40 16 29 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.40 6.30 6.57 -40.82 -0.27 6.03 16 31 H 0.14 1.23 6.40 -52.48 -0.34 0.89 16 32 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 33 H 0.14 0.61 6.77 -52.48 -0.36 0.25 16 34 H 0.19 0.71 7.12 -52.49 -0.37 0.33 16 35 H 0.19 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.16 2.57 7.29 -52.49 -0.38 2.18 16 LS Contribution 327.66 15.07 4.94 4.94 Total: -1.00 -32.92 327.66 -4.65 -37.57 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -2.50 Total: 4.15 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -3.59 Total: 7.13 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 1.34 Total: -42.25 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.95 kcal Atomic # 9 Polarization: -14.09 SS G_CDS: 0.10 Total: -13.98 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.92 -4.65 -37.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411545835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.791 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds