Wall clock time and date at job start Sat Apr 11 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47319 * 239.99985 * 3 2 1 5 5 H 1.48503 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47266 * 119.99799 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 N 1.46505 * 109.47262 * 179.97438 * 9 7 2 12 12 C 1.34769 * 119.99798 * 154.99826 * 11 9 7 13 13 O 1.21547 * 120.00429 * 0.02562 * 12 11 9 14 14 C 1.47864 * 119.99870 * 179.97438 * 12 11 9 15 15 C 1.39625 * 120.11138 * 0.02562 * 14 12 11 16 16 C 1.37971 * 119.98632 * 179.97438 * 15 14 12 17 17 C 1.38272 * 120.21112 * 0.02562 * 16 15 14 18 18 C 1.38900 * 120.22960 * 0.02562 * 17 16 15 19 19 N 1.40272 * 119.99133 * 179.97438 * 18 17 16 20 20 C 1.36108 * 125.94301 * 4.71996 * 19 18 17 21 21 C 1.35372 * 106.05390 * 179.84883 * 20 19 18 22 22 N 1.33775 * 106.53668 * 0.39985 * 21 20 19 23 23 N 1.28606 * 109.05848 * 359.74393 * 22 21 20 24 24 C 1.38584 * 120.01417 * 359.70092 * 18 17 16 25 25 C 1.52997 * 109.47078 * 59.99463 * 9 7 2 26 26 F 1.39905 * 109.47157 * 60.00224 * 25 9 7 27 27 F 1.39900 * 109.47010 * 179.97438 * 25 9 7 28 28 F 1.39897 * 109.47422 * 300.00142 * 25 9 7 29 29 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99239 * 334.99801 * 11 9 7 31 31 H 1.08002 * 120.00317 * 359.97438 * 15 14 12 32 32 H 1.07998 * 119.89200 * 179.97438 * 16 15 14 33 33 H 1.08002 * 119.87818 * 179.97438 * 17 16 15 34 34 H 1.08004 * 126.97374 * 359.97438 * 20 19 18 35 35 H 1.07998 * 126.73563 * 180.14223 * 21 20 19 36 36 H 1.08001 * 120.10530 * 180.27671 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 2.2031 -3.6127 0.0005 12 6 1.8369 -4.8122 0.4938 13 8 0.7167 -4.9704 0.9383 14 6 2.7976 -5.9363 0.4933 15 6 4.0848 -5.7574 -0.0172 16 6 4.9793 -6.8079 -0.0159 17 6 4.6053 -8.0395 0.4893 18 6 3.3267 -8.2276 0.9983 19 7 2.9525 -9.4793 1.5091 20 6 3.7665 -10.5612 1.6483 21 6 2.9984 -11.5418 2.1784 22 7 1.7727 -11.0270 2.3273 23 7 1.7780 -9.8063 1.9226 24 6 2.4225 -7.1774 1.0069 25 6 0.3719 -2.5804 -1.2489 26 9 1.1765 -2.5065 -2.3910 27 9 -0.3272 -3.7922 -1.2492 28 9 -0.5372 -1.5171 -1.2495 29 1 -0.4850 0.8400 -0.0004 30 1 3.0969 -3.4865 -0.3546 31 1 4.3802 -4.7969 -0.4129 32 1 5.9744 -6.6680 -0.4115 33 1 5.3097 -8.8582 0.4873 34 1 4.8134 -10.6239 1.3903 35 1 3.3124 -12.5446 2.4279 36 1 1.4294 -7.3208 1.4064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411545837.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:29 Heat of formation + Delta-G solvation = -31.737161 kcal Electronic energy + Delta-G solvation = -29099.794900 eV Core-core repulsion = 24365.702062 eV Total energy + Delta-G solvation = -4734.092838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.41831 -46.07220 -45.67994 -43.65671 -40.16453 -38.42099 -34.94982 -34.79636 -32.73468 -31.95607 -31.03934 -30.31248 -28.37748 -24.78846 -24.63740 -24.32153 -22.73794 -21.60614 -21.33739 -20.16633 -19.11634 -17.42145 -17.05831 -16.73154 -16.71017 -16.69079 -16.42074 -16.01824 -15.32466 -15.26366 -14.93277 -14.44733 -14.42429 -14.16947 -14.03645 -13.29397 -13.07758 -12.98139 -12.58583 -12.46762 -12.39957 -12.31327 -12.18765 -12.02658 -11.88164 -11.60228 -11.29405 -11.23219 -11.21808 -10.93625 -10.88985 -10.49014 -9.77955 -9.74382 -9.56313 -9.37995 -8.95528 -8.80388 -8.42202 -6.30847 -4.56222 0.23265 0.69748 1.65184 1.95496 2.30176 2.89850 3.14819 3.19689 3.21480 3.49435 3.73864 4.03627 4.13532 4.25855 4.41503 4.49414 4.64025 4.74282 4.77498 4.85323 4.86054 4.92757 5.14111 5.28474 5.52581 5.72785 5.75898 5.78852 5.88577 5.95484 5.97750 6.12876 6.18613 6.55140 6.81633 6.98413 7.35266 7.54600 8.11189 8.20243 8.39180 8.65187 9.11919 10.60722 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.021441 B = 0.002848 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.604915 B = 9829.275997 C =10378.989765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.066 3.934 3 Si 0.916 3.084 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.556 4.556 8 H 0.078 0.922 9 C 0.245 3.755 10 H 0.088 0.912 11 N -0.702 5.702 12 C 0.546 3.454 13 O -0.521 6.521 14 C -0.099 4.099 15 C -0.076 4.076 16 C -0.104 4.104 17 C -0.100 4.100 18 C 0.107 3.893 19 N -0.239 5.239 20 C -0.052 4.052 21 C -0.046 4.046 22 N -0.265 5.265 23 N -0.071 5.071 24 C -0.044 4.044 25 C 0.417 3.583 26 F -0.209 7.209 27 F -0.217 7.217 28 F -0.135 7.135 29 H 0.270 0.730 30 H 0.398 0.602 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.137 0.863 34 H 0.194 0.806 35 H 0.195 0.805 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.726 -14.361 -0.217 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.143 4.143 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.593 4.593 8 H 0.096 0.904 9 C 0.140 3.860 10 H 0.106 0.894 11 N -0.352 5.352 12 C 0.331 3.669 13 O -0.397 6.397 14 C -0.103 4.103 15 C -0.095 4.095 16 C -0.123 4.123 17 C -0.121 4.121 18 C 0.016 3.984 19 N -0.026 5.026 20 C -0.200 4.200 21 C -0.202 4.202 22 N -0.131 5.131 23 N -0.050 5.050 24 C -0.064 4.064 25 C 0.360 3.640 26 F -0.191 7.191 27 F -0.199 7.199 28 F -0.116 7.116 29 H 0.081 0.919 30 H 0.234 0.766 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.211 0.789 35 H 0.212 0.788 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.200 -13.901 0.337 17.855 hybrid contribution 1.902 0.489 -0.733 2.096 sum 13.102 -13.412 -0.395 18.754 Atomic orbital electron populations 1.70382 1.05889 1.27667 1.43115 1.25083 0.95168 1.00164 0.93934 0.86253 0.79346 0.81230 0.78922 1.19784 1.20812 1.19733 1.20808 0.93740 0.87988 1.56720 0.90407 1.19799 0.88672 0.85543 0.91999 0.89411 1.45997 1.17338 1.10323 1.61515 1.18107 0.87018 0.82709 0.79099 1.90819 1.20413 1.82748 1.45766 1.20084 0.94900 0.94346 1.00953 1.21650 0.92100 0.99943 0.95837 1.20965 1.00396 0.91460 0.99433 1.21012 0.93476 0.99130 0.98485 1.17494 0.95505 0.82253 1.03116 1.44782 1.08142 1.09678 1.40012 1.23826 1.00379 0.87263 1.08519 1.23672 0.90237 1.01621 1.04666 1.75167 1.20646 1.00701 1.16581 1.78508 1.02494 1.09874 1.14104 1.21084 1.00207 0.89677 0.95477 1.23107 0.80907 0.72897 0.87040 1.92991 1.74379 1.96191 1.55524 1.93080 1.81499 1.48337 1.96964 1.93410 1.68331 1.53720 1.96184 0.91910 0.76638 0.84047 0.83784 0.84490 0.78924 0.78835 0.82536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.43 9.50 55.43 0.53 -21.90 16 2 C 0.07 1.66 5.20 -17.82 -0.09 1.57 16 3 Si 0.92 19.41 29.54 -169.99 -5.02 14.39 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.56 -13.57 8.46 -34.44 -0.29 -13.86 16 8 H 0.08 1.76 7.74 -52.49 -0.41 1.35 16 9 C 0.25 5.86 2.21 -69.08 -0.15 5.71 16 10 H 0.09 2.36 7.58 -51.93 -0.39 1.97 16 11 N -0.70 -13.50 4.93 -55.87 -0.28 -13.78 16 12 C 0.55 10.41 7.31 -12.32 -0.09 10.32 16 13 O -0.52 -12.03 14.92 5.32 0.08 -11.95 16 14 C -0.10 -1.43 5.87 -104.99 -0.62 -2.04 16 15 C -0.08 -0.79 9.54 -39.16 -0.37 -1.16 16 16 C -0.10 -0.79 10.02 -39.67 -0.40 -1.19 16 17 C -0.10 -0.80 9.45 -39.32 -0.37 -1.17 16 18 C 0.11 1.24 6.66 -83.62 -0.56 0.69 16 19 N -0.24 -2.89 3.56 -10.50 -0.04 -2.93 16 20 C -0.05 -0.44 10.91 -16.68 -0.18 -0.62 16 21 C -0.05 -0.43 12.05 -17.73 -0.21 -0.65 16 22 N -0.26 -3.70 12.39 30.24 0.37 -3.33 16 23 N -0.07 -1.08 12.42 60.35 0.75 -0.33 16 24 C -0.04 -0.63 9.16 -39.00 -0.36 -0.98 16 25 C 0.42 10.43 2.81 37.16 0.10 10.53 16 26 F -0.21 -4.99 16.94 2.25 0.04 -4.95 16 27 F -0.22 -5.44 15.67 2.25 0.04 -5.41 16 28 F -0.14 -3.68 12.91 2.25 0.03 -3.65 16 29 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.40 6.30 6.57 -40.82 -0.27 6.03 16 31 H 0.14 1.22 6.40 -52.49 -0.34 0.89 16 32 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 33 H 0.14 0.61 6.77 -52.49 -0.36 0.25 16 34 H 0.19 0.71 7.12 -52.48 -0.37 0.33 16 35 H 0.19 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.16 2.57 7.29 -52.49 -0.38 2.18 16 LS Contribution 327.66 15.07 4.94 4.94 Total: -1.00 -32.92 327.66 -4.65 -37.57 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -2.50 Total: 4.18 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: -3.59 Total: 7.14 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 1.34 Total: -42.27 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.95 kcal Atomic # 9 Polarization: -14.11 SS G_CDS: 0.10 Total: -14.00 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.92 -4.65 -37.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411545837.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.837 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds