Wall clock time and date at job start Sat Apr 11 2020 05:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47319 * 239.99985 * 3 2 1 5 5 H 1.48503 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47266 * 119.99799 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 N 1.46505 * 109.47262 * 179.97438 * 9 7 2 12 12 C 1.34769 * 119.99798 * 154.99826 * 11 9 7 13 13 O 1.21547 * 120.00429 * 0.02562 * 12 11 9 14 14 C 1.47864 * 119.99870 * 179.97438 * 12 11 9 15 15 C 1.39625 * 120.11138 * 0.02562 * 14 12 11 16 16 C 1.37971 * 119.98632 * 179.97438 * 15 14 12 17 17 C 1.38272 * 120.21112 * 0.02562 * 16 15 14 18 18 C 1.38900 * 120.22960 * 0.02562 * 17 16 15 19 19 N 1.40272 * 119.99133 * 179.97438 * 18 17 16 20 20 C 1.36108 * 125.94301 * 4.71996 * 19 18 17 21 21 C 1.35372 * 106.05390 * 179.84883 * 20 19 18 22 22 N 1.33775 * 106.53668 * 0.39985 * 21 20 19 23 23 N 1.28606 * 109.05848 * 359.74393 * 22 21 20 24 24 C 1.38584 * 120.01417 * 359.70092 * 18 17 16 25 25 C 1.52997 * 109.47078 * 59.99463 * 9 7 2 26 26 F 1.39905 * 109.47157 * 60.00224 * 25 9 7 27 27 F 1.39900 * 109.47010 * 179.97438 * 25 9 7 28 28 F 1.39897 * 109.47422 * 300.00142 * 25 9 7 29 29 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99239 * 334.99801 * 11 9 7 31 31 H 1.08002 * 120.00317 * 359.97438 * 15 14 12 32 32 H 1.07998 * 119.89200 * 179.97438 * 16 15 14 33 33 H 1.08002 * 119.87818 * 179.97438 * 17 16 15 34 34 H 1.08004 * 126.97374 * 359.97438 * 20 19 18 35 35 H 1.07998 * 126.73563 * 180.14223 * 21 20 19 36 36 H 1.08001 * 120.10530 * 180.27671 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 2.2031 -3.6127 0.0005 12 6 1.8369 -4.8122 0.4938 13 8 0.7167 -4.9704 0.9383 14 6 2.7976 -5.9363 0.4933 15 6 4.0848 -5.7574 -0.0172 16 6 4.9793 -6.8079 -0.0159 17 6 4.6053 -8.0395 0.4893 18 6 3.3267 -8.2276 0.9983 19 7 2.9525 -9.4793 1.5091 20 6 3.7665 -10.5612 1.6483 21 6 2.9984 -11.5418 2.1784 22 7 1.7727 -11.0270 2.3273 23 7 1.7780 -9.8063 1.9226 24 6 2.4225 -7.1774 1.0069 25 6 0.3719 -2.5804 -1.2489 26 9 1.1765 -2.5065 -2.3910 27 9 -0.3272 -3.7922 -1.2492 28 9 -0.5372 -1.5171 -1.2495 29 1 -0.4850 0.8400 -0.0004 30 1 3.0969 -3.4865 -0.3546 31 1 4.3802 -4.7969 -0.4129 32 1 5.9744 -6.6680 -0.4115 33 1 5.3097 -8.8582 0.4873 34 1 4.8134 -10.6239 1.3903 35 1 3.3124 -12.5446 2.4279 36 1 1.4294 -7.3208 1.4064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411545837.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:28 Heat of formation + Delta-G solvation = -54.999077 kcal Electronic energy + Delta-G solvation = -29100.803612 eV Core-core repulsion = 24365.702062 eV Total energy + Delta-G solvation = -4735.101551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.46294 -48.09880 -47.76894 -44.46658 -41.34142 -39.64852 -36.63788 -35.76389 -34.51945 -32.83482 -31.92164 -31.29075 -29.99374 -26.65357 -25.64184 -25.36714 -23.85766 -22.92711 -22.37019 -21.52894 -20.27523 -19.06753 -18.93574 -18.68607 -18.21568 -17.56366 -17.47069 -17.38371 -16.89264 -16.39084 -16.12033 -15.85594 -15.52982 -15.22272 -15.02218 -14.94193 -14.83240 -14.53843 -14.46724 -14.32577 -14.07970 -14.04305 -13.91612 -13.12427 -13.06123 -12.96387 -12.80218 -12.60981 -12.47316 -12.23707 -12.12276 -12.03752 -11.63959 -11.12815 -10.69551 -10.49957 -10.33209 -10.11021 -9.78122 -8.22634 -6.54841 -0.57196 -0.23282 0.89009 1.20104 1.47652 1.50026 1.53594 1.58723 1.72906 2.03652 2.37380 2.46966 2.67819 2.92882 3.32370 3.46822 3.64855 3.71417 3.77271 3.83616 3.95043 4.00742 4.11669 4.20427 4.24322 4.30317 4.60215 4.72835 4.85097 5.03472 5.10414 5.15807 5.25047 5.28121 5.42899 5.51548 5.61659 5.78725 6.49105 6.58593 7.11285 7.22757 7.37882 8.70137 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.021441 B = 0.002848 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.604915 B = 9829.275997 C =10378.989765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.014 3.986 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.562 4.562 8 H 0.099 0.901 9 C 0.251 3.749 10 H 0.046 0.954 11 N -0.693 5.693 12 C 0.541 3.459 13 O -0.577 6.577 14 C -0.125 4.125 15 C -0.069 4.069 16 C -0.082 4.082 17 C -0.070 4.070 18 C 0.095 3.905 19 N -0.246 5.246 20 C -0.028 4.028 21 C -0.054 4.054 22 N -0.304 5.304 23 N -0.139 5.139 24 C -0.069 4.069 25 C 0.413 3.587 26 F -0.200 7.200 27 F -0.222 7.222 28 F -0.150 7.150 29 H 0.269 0.731 30 H 0.417 0.583 31 H 0.160 0.840 32 H 0.198 0.802 33 H 0.191 0.809 34 H 0.252 0.748 35 H 0.233 0.767 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.551 -15.489 -1.317 24.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.192 4.192 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.599 4.599 8 H 0.117 0.883 9 C 0.144 3.856 10 H 0.064 0.936 11 N -0.344 5.344 12 C 0.329 3.671 13 O -0.457 6.457 14 C -0.129 4.129 15 C -0.088 4.088 16 C -0.100 4.100 17 C -0.091 4.091 18 C 0.004 3.996 19 N -0.034 5.034 20 C -0.176 4.176 21 C -0.211 4.211 22 N -0.169 5.169 23 N -0.116 5.116 24 C -0.090 4.090 25 C 0.356 3.644 26 F -0.182 7.182 27 F -0.204 7.204 28 F -0.131 7.131 29 H 0.079 0.921 30 H 0.255 0.745 31 H 0.178 0.822 32 H 0.215 0.785 33 H 0.208 0.792 34 H 0.268 0.732 35 H 0.249 0.751 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 17.052 -15.041 -0.772 22.751 hybrid contribution 0.184 0.673 -0.394 0.801 sum 17.236 -14.368 -1.166 22.470 Atomic orbital electron populations 1.70534 1.07686 1.28334 1.44470 1.26056 0.95875 1.03906 0.93352 0.85171 0.77950 0.76436 0.79556 1.18635 1.21352 1.18523 1.21213 0.94764 0.87921 1.55962 0.88263 1.19376 0.88944 0.87440 0.89797 0.93631 1.45768 1.17376 1.09456 1.61817 1.18922 0.87243 0.83506 0.77385 1.90779 1.23210 1.83679 1.48069 1.19642 0.95932 0.92420 1.04890 1.21937 0.90360 1.02021 0.94498 1.21562 1.01551 0.89771 0.97147 1.21659 0.91868 1.00799 0.94748 1.17723 0.96514 0.81427 1.03923 1.44961 1.08120 1.10552 1.39734 1.24792 1.02038 0.85123 1.05673 1.24473 0.88863 1.03541 1.04205 1.75092 1.23462 1.00917 1.17450 1.78520 1.04811 1.10843 1.17433 1.20821 0.99615 0.91332 0.97265 1.23324 0.80897 0.72324 0.87816 1.92989 1.73991 1.96137 1.55080 1.93069 1.81715 1.48568 1.97029 1.93380 1.68969 1.54440 1.96314 0.92139 0.74469 0.82204 0.78485 0.79208 0.73181 0.75101 0.86791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.42 9.50 21.45 0.20 -48.22 16 2 C 0.01 0.68 5.20 84.65 0.44 1.12 16 3 Si 0.99 39.31 29.54 68.60 2.03 41.33 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.29 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 7 C -0.56 -27.50 8.46 25.60 0.22 -27.28 16 8 H 0.10 4.31 7.74 -2.91 -0.02 4.28 16 9 C 0.25 12.52 2.21 44.24 0.10 12.61 16 10 H 0.05 2.66 7.58 -2.39 -0.02 2.64 16 11 N -0.69 -27.32 4.93 -448.97 -2.22 -29.54 16 12 C 0.54 21.94 7.31 86.79 0.63 22.57 16 13 O -0.58 -29.36 14.92 -3.86 -0.06 -29.42 16 14 C -0.13 -3.67 5.87 -20.10 -0.12 -3.78 16 15 C -0.07 -1.21 9.54 22.54 0.21 -1.00 16 16 C -0.08 -0.73 10.02 22.21 0.22 -0.51 16 17 C -0.07 -0.71 9.45 22.44 0.21 -0.50 16 18 C 0.09 2.04 6.66 38.03 0.25 2.30 16 19 N -0.25 -5.67 3.56 -187.15 -0.67 -6.34 16 20 C -0.03 -0.36 10.91 83.37 0.91 0.55 16 21 C -0.05 -0.90 12.05 83.73 1.01 0.11 16 22 N -0.30 -8.71 12.39 -58.24 -0.72 -9.43 16 23 N -0.14 -4.43 12.42 37.02 0.46 -3.97 16 24 C -0.07 -2.10 9.16 22.65 0.21 -1.89 16 25 C 0.41 21.46 2.81 71.98 0.20 21.66 16 26 F -0.20 -9.62 16.94 44.97 0.76 -8.86 16 27 F -0.22 -11.77 15.67 44.97 0.70 -11.07 16 28 F -0.15 -8.50 12.91 44.97 0.58 -7.92 16 29 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 30 H 0.42 12.79 6.57 -92.70 -0.61 12.18 16 31 H 0.16 2.14 6.40 -2.91 -0.02 2.12 16 32 H 0.20 -0.13 8.06 -2.91 -0.02 -0.15 16 33 H 0.19 -0.05 6.77 -2.91 -0.02 -0.07 16 34 H 0.25 -0.12 7.12 -2.91 -0.02 -0.14 16 35 H 0.23 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.11 4.35 7.29 -2.91 -0.02 4.33 16 Total: -1.00 -82.76 327.66 6.15 -76.61 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.57 Total: 10.86 kcal Atomic # 6 Polarization: 21.46 SS G_CDS: 4.50 Total: 25.96 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -2.94 Total: -97.50 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.06 Total: -29.42 kcal Atomic # 9 Polarization: -29.90 SS G_CDS: 2.05 Total: -27.85 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.33 kcal Total: -82.76 6.15 -76.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411545837.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.612 kcal (2) G-P(sol) polarization free energy of solvation -82.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds