Wall clock time and date at job start Sat Apr 11 2020 05:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86800 * 120.00241 * 2 1 4 4 H 1.48497 * 109.47217 * 274.66796 * 3 2 1 5 5 H 1.48506 * 109.46572 * 34.66922 * 3 2 1 6 6 H 1.48501 * 109.47129 * 154.66597 * 3 2 1 7 7 C 1.40041 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99385 * 196.84630 * 7 2 1 9 9 C 1.41538 * 119.99718 * 16.84622 * 7 2 1 10 10 C 1.41186 * 120.98940 * 203.63803 * 9 7 2 11 11 C 1.37593 * 119.01266 * 180.02562 * 10 9 7 12 12 N 1.32080 * 121.11472 * 359.97438 * 11 10 9 13 13 C 1.32475 * 122.22903 * 0.02661 * 12 11 10 14 14 N 1.39388 * 119.57940 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00261 * 5.21680 * 14 13 12 16 16 O 1.21572 * 119.99573 * 355.13453 * 15 14 13 17 17 C 1.47670 * 119.99970 * 175.13870 * 15 14 13 18 18 C 1.41525 * 126.51883 * 180.27289 * 17 15 14 19 19 C 1.35357 * 105.50245 * 180.14831 * 18 17 15 20 20 N 1.35039 * 107.23063 * 359.60203 * 19 18 17 21 21 C 1.46504 * 124.88279 * 180.29212 * 20 19 18 22 22 C 1.52999 * 109.46974 * 124.99887 * 21 20 19 23 23 F 1.39900 * 109.46856 * 60.00467 * 22 21 20 24 24 F 1.39902 * 109.47289 * 180.02562 * 22 21 20 25 25 F 1.39896 * 109.47514 * 300.00846 * 22 21 20 26 26 N 1.28470 * 110.23697 * 0.26378 * 20 19 18 27 27 C 1.38623 * 120.83873 * 0.25585 * 13 12 11 28 28 H 0.96996 * 120.00353 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.49427 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.43985 * 180.02562 * 11 10 9 31 31 H 0.97006 * 120.00049 * 185.20901 * 14 13 12 32 32 H 1.07997 * 127.24378 * 0.03617 * 18 17 15 33 33 H 1.08000 * 126.38383 * 179.86358 * 19 18 17 34 34 H 1.08997 * 109.47468 * 245.00456 * 21 20 19 35 35 H 1.09004 * 109.47171 * 5.01000 * 21 20 19 36 36 H 1.08003 * 120.60237 * 179.72772 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3903 2.1034 -1.3954 5 1 1.4916 2.6221 0.7965 6 1 3.5848 1.4136 0.5991 7 6 2.0076 -1.2128 -0.0005 8 1 3.0528 -1.2329 0.2705 9 6 1.3453 -2.4121 -0.3563 10 6 1.8230 -3.6649 0.0858 11 6 1.1479 -4.8051 -0.2848 12 7 0.0675 -4.7429 -1.0420 13 6 -0.4211 -3.5931 -1.4827 14 7 -1.5649 -3.5918 -2.2794 15 6 -2.2268 -4.7429 -2.5102 16 8 -1.7784 -5.7950 -2.0979 17 6 -3.4966 -4.7261 -3.2639 18 6 -4.3038 -5.8451 -3.5788 19 6 -5.3532 -5.3495 -4.2756 20 7 -5.1817 -4.0127 -4.3602 21 6 -6.1011 -3.0909 -5.0318 22 6 -6.5280 -1.9940 -4.0543 23 9 -5.3989 -1.2919 -3.6192 24 9 -7.4065 -1.1140 -4.6954 25 9 -7.1693 -2.5734 -2.9542 26 7 -4.0966 -3.6655 -3.7665 27 6 0.1940 -2.3918 -1.1665 28 1 -0.4850 0.8400 0.0004 29 1 2.7052 -3.7274 0.7056 30 1 1.5070 -5.7672 0.0498 31 1 -1.8846 -2.7623 -2.6677 32 1 -4.1202 -6.8772 -3.3195 33 1 -6.1765 -5.9169 -4.6838 34 1 -5.6015 -2.6395 -5.8889 35 1 -6.9810 -3.6379 -5.3707 36 1 -0.2052 -1.4569 -1.5314 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412001833.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:32 Heat of formation + Delta-G solvation = -59.652495 kcal Electronic energy + Delta-G solvation = -28544.664680 eV Core-core repulsion = 23809.361342 eV Total energy + Delta-G solvation = -4735.303338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.49012 -48.06660 -47.88260 -42.83288 -39.37738 -37.63847 -34.45939 -34.29982 -33.69327 -30.98252 -30.52667 -29.63439 -28.35084 -25.96898 -24.86409 -23.12047 -21.92901 -21.73140 -21.03422 -19.52379 -19.09591 -18.89457 -18.39231 -17.66428 -17.52251 -16.57405 -15.78054 -15.66886 -15.17353 -14.90673 -14.85461 -14.41947 -14.35887 -14.20486 -14.14946 -14.10508 -14.02679 -14.00974 -13.59188 -13.44101 -13.21001 -12.70934 -12.59341 -12.50003 -12.20193 -11.42115 -11.20708 -11.02329 -10.87425 -10.27376 -10.13556 -9.74672 -9.58736 -9.44824 -9.32317 -9.28277 -7.97780 -7.72283 -6.99718 -6.78069 -4.58180 1.36255 1.76150 1.99820 2.26185 2.78050 2.83716 3.04175 3.07909 3.19906 3.28192 3.37279 3.59513 3.73605 3.87217 3.90560 4.13920 4.35053 4.50166 4.64071 4.70671 5.13004 5.49618 5.64918 5.71780 5.99315 6.25718 6.38817 6.61758 6.69706 6.83736 6.98385 7.13521 7.41468 7.47967 7.59329 7.83880 7.99031 8.24241 8.43994 8.72788 8.77325 8.88732 9.71469 10.09530 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.011387 B = 0.003326 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.459899 B = 8416.760761 C =10588.398083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.078 3.922 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.456 4.456 8 H 0.083 0.917 9 C 0.144 3.856 10 C -0.285 4.285 11 C 0.120 3.880 12 N -0.556 5.556 13 C 0.337 3.663 14 N -0.643 5.643 15 C 0.586 3.414 16 O -0.470 6.470 17 C 0.012 3.988 18 C -0.171 4.171 19 C -0.013 4.013 20 N -0.302 5.302 21 C 0.085 3.915 22 C 0.445 3.555 23 F -0.158 7.158 24 F -0.176 7.176 25 F -0.176 7.176 26 N -0.257 5.257 27 C -0.240 4.240 28 H 0.282 0.718 29 H 0.102 0.898 30 H 0.125 0.875 31 H 0.414 0.586 32 H 0.168 0.832 33 H 0.186 0.814 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.059 -2.608 -12.429 20.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.487 4.487 8 H 0.101 0.899 9 C 0.136 3.864 10 C -0.309 4.309 11 C -0.034 4.034 12 N -0.275 5.275 13 C 0.113 3.887 14 N -0.288 5.288 15 C 0.368 3.632 16 O -0.337 6.337 17 C -0.151 4.151 18 C -0.198 4.198 19 C -0.153 4.153 20 N -0.091 5.091 21 C -0.038 4.038 22 C 0.389 3.611 23 F -0.139 7.139 24 F -0.157 7.157 25 F -0.158 7.158 26 N -0.091 5.091 27 C -0.266 4.266 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.142 0.858 31 H 0.250 0.750 32 H 0.186 0.814 33 H 0.203 0.797 34 H 0.156 0.844 35 H 0.165 0.835 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.418 -2.791 -12.495 20.820 hybrid contribution 0.205 1.448 0.249 1.484 sum -16.213 -1.343 -12.247 20.363 Atomic orbital electron populations 1.69780 1.07695 1.29471 1.34089 1.25968 0.94745 1.01494 0.91922 0.86250 0.80609 0.80371 0.79234 1.19233 1.20196 1.18431 1.19594 0.97923 0.90696 1.40474 0.89904 1.17556 0.89787 0.92315 0.86789 1.21891 1.05284 0.93867 1.09816 1.21756 0.90873 0.96849 0.93967 1.67207 1.15566 1.26450 1.18300 1.18140 0.87063 0.90943 0.92581 1.43245 1.25787 1.10575 1.49189 1.16954 0.81680 0.84674 0.79901 1.90885 1.65282 1.29835 1.47730 1.22429 0.98458 0.90386 1.03856 1.21868 0.94556 1.00616 1.02805 1.22865 1.03072 0.83543 1.05836 1.44926 1.16801 1.06058 1.41294 1.23024 0.95761 0.90693 0.94350 1.20465 0.75888 0.83250 0.81467 1.93340 1.50248 1.79973 1.90323 1.93231 1.70043 1.70983 1.81455 1.93248 1.82294 1.84021 1.56207 1.73720 0.97048 1.26907 1.11422 1.21548 1.02451 0.95526 1.07044 0.90651 0.87950 0.85802 0.75025 0.81423 0.79680 0.84407 0.83539 0.85411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.88 10.93 55.55 0.61 -19.27 16 2 C 0.08 1.92 5.20 -17.34 -0.09 1.83 16 3 Si 0.91 18.21 29.59 -169.99 -5.03 13.18 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 7 C -0.46 -11.89 9.12 -37.65 -0.34 -12.23 16 8 H 0.08 2.06 7.90 -52.49 -0.41 1.65 16 9 C 0.14 3.85 5.60 -106.55 -0.60 3.26 16 10 C -0.28 -7.10 9.90 -38.70 -0.38 -7.48 16 11 C 0.12 2.93 11.15 -17.68 -0.20 2.73 16 12 N -0.56 -14.56 7.84 -12.53 -0.10 -14.66 16 13 C 0.34 8.54 7.41 -154.77 -1.15 7.39 16 14 N -0.64 -13.92 5.38 -12.40 -0.07 -13.99 16 15 C 0.59 12.19 7.78 -12.41 -0.10 12.10 16 16 O -0.47 -11.22 15.18 5.30 0.08 -11.14 16 17 C 0.01 0.19 7.13 -82.77 -0.59 -0.40 16 18 C -0.17 -2.17 10.81 -39.36 -0.43 -2.59 16 19 C -0.01 -0.11 11.40 -17.17 -0.20 -0.31 16 20 N -0.30 -3.05 3.33 -61.33 -0.20 -3.26 16 21 C 0.09 0.48 6.41 -4.04 -0.03 0.45 16 22 C 0.44 3.93 3.26 37.16 0.12 4.05 16 23 F -0.16 -1.96 16.21 2.25 0.04 -1.93 16 24 F -0.18 -1.40 17.32 2.25 0.04 -1.36 16 25 F -0.18 -1.89 17.23 2.25 0.04 -1.86 16 26 N -0.26 -3.71 10.48 33.42 0.35 -3.36 16 27 C -0.24 -6.30 8.62 -38.47 -0.33 -6.63 16 28 H 0.28 6.49 8.29 -40.82 -0.34 6.15 16 29 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 30 H 0.12 2.62 8.06 -52.48 -0.42 2.20 16 31 H 0.41 8.03 8.43 -40.82 -0.34 7.69 16 32 H 0.17 1.94 8.06 -52.49 -0.42 1.51 16 33 H 0.19 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.14 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.15 0.16 8.04 -51.93 -0.42 -0.25 16 36 H 0.13 3.35 6.20 -52.48 -0.33 3.03 16 LS Contribution 337.85 15.07 5.09 5.09 Total: -1.00 -34.55 337.85 -6.21 -40.75 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -2.75 Total: 9.61 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -4.30 Total: 2.17 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.59 Total: -54.53 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.08 Total: -11.14 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.11 Total: -5.14 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.55 -6.21 -40.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412001833.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.898 kcal (2) G-P(sol) polarization free energy of solvation -34.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds