Wall clock time and date at job start Sat Apr 11 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00335 * 2 1 4 4 H 1.48503 * 109.47171 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46924 * 299.99883 * 3 2 1 6 6 H 1.48502 * 109.47270 * 60.00314 * 3 2 1 7 7 C 1.37881 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00672 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99602 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.88403 * 300.69687 * 9 7 2 11 11 C 1.55155 * 111.00257 * 176.81992 * 9 7 2 12 12 C 1.54425 * 102.89443 * 206.40632 * 11 9 7 13 13 N 1.47025 * 107.28225 * 22.18192 * 12 11 9 14 14 C 1.34776 * 125.64821 * 181.09537 * 13 12 11 15 15 O 1.21683 * 119.99822 * 174.85629 * 14 13 12 16 16 C 1.46675 * 120.00053 * 354.85603 * 14 13 12 17 17 C 1.35662 * 126.12910 * 185.39600 * 16 14 13 18 18 N 1.30950 * 114.19005 * 179.82891 * 17 16 14 19 19 C 1.29433 * 117.36514 * 0.48143 * 18 17 16 20 20 C 1.50695 * 124.80493 * 179.70237 * 19 18 17 21 21 O 1.43748 * 109.63124 * 149.40402 * 20 19 18 22 22 C 1.44792 * 104.81483 * 215.80316 * 21 20 19 23 23 C 1.54916 * 101.71825 * 36.10428 * 22 21 20 24 24 O 1.43367 * 109.63367 * 30.03357 * 20 19 18 25 25 S 1.70952 * 110.38854 * 359.73249 * 19 18 17 26 26 C 1.47424 * 108.69843 * 1.06742 * 13 12 11 27 27 H 0.97001 * 119.99658 * 359.97438 * 1 2 3 28 28 H 0.96705 * 114.00225 * 59.30422 * 10 9 7 29 29 H 1.09004 * 110.71887 * 324.74659 * 11 9 7 30 30 H 1.09003 * 110.72000 * 88.02028 * 11 9 7 31 31 H 1.09006 * 109.87405 * 262.76654 * 12 11 9 32 32 H 1.09003 * 110.00672 * 141.68157 * 12 11 9 33 33 H 1.08001 * 122.90594 * 359.97438 * 17 16 14 34 34 H 1.09000 * 109.62645 * 269.64154 * 20 19 18 35 35 H 1.08996 * 110.97263 * 277.99782 * 22 21 20 36 36 H 1.08996 * 111.00937 * 154.22595 * 22 21 20 37 37 H 1.08999 * 110.69279 * 206.04247 * 23 22 21 38 38 H 1.08996 * 110.84538 * 82.90280 * 23 22 21 39 39 H 1.09004 * 110.36169 * 217.02997 * 26 13 12 40 40 H 1.08995 * 110.37311 * 94.71102 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 8 0.4055 -2.6003 1.1459 11 6 2.2253 -3.7039 -0.0825 12 6 1.3625 -4.8012 -0.7430 13 7 0.2752 -4.1257 -1.4662 14 6 -0.7064 -4.7371 -2.1584 15 8 -1.6098 -4.0806 -2.6417 16 6 -0.6856 -6.1937 -2.3291 17 6 -1.5463 -6.9231 -3.0827 18 7 -1.3104 -8.2111 -3.0714 19 6 -0.3168 -8.6277 -2.3542 20 6 0.0989 -10.0696 -2.2154 21 8 1.5183 -10.1445 -2.0011 22 6 1.9364 -11.3392 -2.7041 23 6 1.0061 -11.3172 -3.9427 24 8 -0.2252 -10.7821 -3.4165 25 16 0.4568 -7.3109 -1.5862 26 6 0.4362 -2.6688 -1.3082 27 1 -0.4850 0.8401 0.0004 28 1 -0.2532 -1.8954 1.2126 29 1 3.0861 -3.4625 -0.7061 30 1 2.5434 -4.0101 0.9141 31 1 0.9473 -5.4570 0.0223 32 1 1.9670 -5.3817 -1.4401 33 1 -2.3545 -6.4795 -3.6452 34 1 -0.4211 -10.5208 -1.3703 35 1 1.7605 -12.2291 -2.0998 36 1 2.9830 -11.2720 -3.0009 37 1 0.8543 -12.3253 -4.3283 38 1 1.4087 -10.6659 -4.7185 39 1 -0.5373 -2.1877 -1.2134 40 1 0.9846 -2.2537 -2.1538 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412277789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:39 Heat of formation + Delta-G solvation = -108.393737 kcal Electronic energy + Delta-G solvation = -27306.289975 eV Core-core repulsion = 23213.880999 eV Total energy + Delta-G solvation = -4092.408976 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.90304 -39.88422 -39.04768 -37.15648 -35.50914 -34.39091 -32.24416 -31.95704 -30.50200 -29.66664 -28.01377 -27.07339 -25.25536 -23.90585 -23.70490 -22.77754 -20.92890 -19.74048 -19.10974 -18.24731 -17.75753 -17.26813 -17.04887 -16.45345 -15.99601 -15.63068 -15.40357 -15.16774 -14.91929 -14.44864 -14.30373 -14.01420 -13.92481 -13.65568 -13.22590 -13.18308 -13.10302 -12.95949 -12.15616 -12.05733 -11.85907 -11.60555 -11.39731 -11.10160 -10.93962 -10.79390 -10.75539 -10.53131 -10.50258 -10.26601 -9.73862 -9.64582 -9.42887 -9.36943 -9.02061 -8.74954 -8.45005 -7.91462 -6.33601 -4.43532 0.22222 1.11437 1.61167 2.49440 2.82777 3.16662 3.26082 3.28975 3.35358 3.46693 3.49333 4.05631 4.16319 4.22487 4.44437 4.55374 4.74755 4.82687 4.93896 4.96008 4.99960 5.20391 5.24179 5.31574 5.37598 5.47599 5.68195 5.88576 6.02240 6.09601 6.38502 6.48274 6.61824 6.74137 6.82017 7.15845 7.26061 7.58315 7.68897 7.93060 8.00634 8.49459 8.60837 9.25423 9.35388 10.73725 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.025976 B = 0.002747 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.654025 B =10191.728270 C =10816.166524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.538 4.538 8 H 0.069 0.931 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.111 4.111 12 C 0.091 3.909 13 N -0.601 5.601 14 C 0.597 3.403 15 O -0.533 6.533 16 C -0.273 4.273 17 C 0.102 3.898 18 N -0.447 5.447 19 C -0.017 4.017 20 C 0.318 3.682 21 O -0.371 6.371 22 C 0.019 3.981 23 C 0.016 3.984 24 O -0.356 6.356 25 S 0.240 5.760 26 C 0.094 3.906 27 H 0.271 0.729 28 H 0.385 0.615 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.189 0.811 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.622 -21.393 -4.178 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.209 3.791 10 O -0.392 6.392 11 C -0.149 4.149 12 C -0.034 4.034 13 N -0.332 5.332 14 C 0.383 3.617 15 O -0.413 6.413 16 C -0.398 4.398 17 C -0.057 4.057 18 N -0.163 5.163 19 C -0.292 4.292 20 C 0.219 3.781 21 O -0.291 6.291 22 C -0.057 4.057 23 C -0.060 4.060 24 O -0.276 6.276 25 S 0.497 5.503 26 C -0.027 4.027 27 H 0.081 0.919 28 H 0.236 0.764 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.206 0.794 34 H 0.134 0.866 35 H 0.102 0.898 36 H 0.133 0.867 37 H 0.124 0.876 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.817 -21.722 -3.922 22.593 hybrid contribution -0.607 1.627 -0.768 1.899 sum 4.210 -20.095 -4.689 21.060 Atomic orbital electron populations 1.69657 1.06021 1.27978 1.49483 1.25094 0.95055 0.99861 0.93255 0.86326 0.80019 0.82622 0.77806 1.19553 1.20759 1.20711 1.21492 0.93737 0.89892 1.52523 0.91308 1.19619 0.86133 0.91729 0.81656 1.86085 1.51461 1.55063 1.46600 1.22619 0.97571 0.94381 1.00355 1.22189 0.89374 0.96483 0.95319 1.48633 1.25436 1.10321 1.48857 1.16321 0.81977 0.83959 0.79455 1.90822 1.34906 1.64991 1.50564 1.26218 1.04225 0.99709 1.09644 1.22155 0.99253 0.86407 0.97838 1.66086 1.16555 1.15078 1.18578 1.27711 0.98397 1.01588 1.01467 1.22084 0.81980 0.85063 0.88988 1.89265 1.20735 1.45368 1.73734 1.24497 1.01244 0.88187 0.91805 1.24310 0.84081 1.00767 0.96863 1.89059 1.28961 1.69982 1.39580 1.84398 1.28143 0.94908 1.42821 1.23403 1.03143 0.75593 1.00559 0.91898 0.76411 0.90019 0.90234 0.91546 0.92062 0.79386 0.86638 0.89833 0.86669 0.87611 0.90354 0.89242 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.33 10.69 55.43 0.59 -22.74 16 2 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 3 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -13.55 8.26 -34.44 -0.28 -13.83 16 8 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 9 C 0.25 5.85 0.88 -89.62 -0.08 5.77 16 10 O -0.58 -14.53 13.17 -35.23 -0.46 -15.00 16 11 C -0.11 -2.12 6.13 -24.84 -0.15 -2.27 16 12 C 0.09 1.58 5.20 -3.01 -0.02 1.56 16 13 N -0.60 -12.40 3.33 -172.00 -0.57 -12.97 16 14 C 0.60 12.33 7.81 -12.85 -0.10 12.23 16 15 O -0.53 -12.64 17.10 5.20 0.09 -12.55 16 16 C -0.27 -4.65 6.40 -37.10 -0.24 -4.89 16 17 C 0.10 1.62 11.09 -18.85 -0.21 1.42 16 18 N -0.45 -6.92 10.33 -11.50 -0.12 -7.04 16 19 C -0.02 -0.23 6.96 -13.29 -0.09 -0.33 16 20 C 0.32 3.42 4.55 36.00 0.16 3.58 16 21 O -0.37 -3.55 10.94 -59.04 -0.65 -4.20 16 22 C 0.02 0.10 7.95 38.17 0.30 0.41 16 23 C 0.02 0.11 8.07 38.17 0.31 0.42 16 24 O -0.36 -3.92 11.07 -59.04 -0.65 -4.58 16 25 S 0.24 3.29 18.25 -107.50 -1.96 1.33 16 26 C 0.09 2.21 5.53 -2.53 -0.01 2.19 16 27 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.38 9.94 7.25 45.56 0.33 10.27 16 29 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.07 1.10 7.06 -51.93 -0.37 0.73 16 32 H 0.06 0.92 6.85 -51.93 -0.36 0.56 16 33 H 0.19 2.80 8.06 -52.49 -0.42 2.38 16 34 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.09 2.37 7.43 -51.93 -0.39 1.98 16 40 H 0.07 1.56 8.03 -51.93 -0.42 1.15 16 LS Contribution 347.50 15.07 5.24 5.24 Total: -1.00 -31.18 347.50 -8.14 -39.32 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -4.11 Total: 10.33 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -0.50 Total: 7.97 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: -0.10 Total: -42.75 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -1.67 Total: -36.33 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -1.96 Total: 1.33 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.18 -8.14 -39.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412277789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.078 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds