Wall clock time and date at job start Sat Apr 11 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00335 * 2 1 4 4 H 1.48503 * 109.47171 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46924 * 299.99883 * 3 2 1 6 6 H 1.48502 * 109.47270 * 60.00314 * 3 2 1 7 7 C 1.37881 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00672 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99602 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.88403 * 300.69687 * 9 7 2 11 11 C 1.55155 * 111.00257 * 176.81992 * 9 7 2 12 12 C 1.54425 * 102.89443 * 206.40632 * 11 9 7 13 13 N 1.47025 * 107.28225 * 22.18192 * 12 11 9 14 14 C 1.34776 * 125.64821 * 181.09537 * 13 12 11 15 15 O 1.21683 * 119.99822 * 174.85629 * 14 13 12 16 16 C 1.46675 * 120.00053 * 354.85603 * 14 13 12 17 17 C 1.35662 * 126.12910 * 185.39600 * 16 14 13 18 18 N 1.30950 * 114.19005 * 179.82891 * 17 16 14 19 19 C 1.29433 * 117.36514 * 0.48143 * 18 17 16 20 20 C 1.50695 * 124.80493 * 179.70237 * 19 18 17 21 21 O 1.43748 * 109.63124 * 149.40402 * 20 19 18 22 22 C 1.44792 * 104.81483 * 215.80316 * 21 20 19 23 23 C 1.54916 * 101.71825 * 36.10428 * 22 21 20 24 24 O 1.43367 * 109.63367 * 30.03357 * 20 19 18 25 25 S 1.70952 * 110.38854 * 359.73249 * 19 18 17 26 26 C 1.47424 * 108.69843 * 1.06742 * 13 12 11 27 27 H 0.97001 * 119.99658 * 359.97438 * 1 2 3 28 28 H 0.96705 * 114.00225 * 59.30422 * 10 9 7 29 29 H 1.09004 * 110.71887 * 324.74659 * 11 9 7 30 30 H 1.09003 * 110.72000 * 88.02028 * 11 9 7 31 31 H 1.09006 * 109.87405 * 262.76654 * 12 11 9 32 32 H 1.09003 * 110.00672 * 141.68157 * 12 11 9 33 33 H 1.08001 * 122.90594 * 359.97438 * 17 16 14 34 34 H 1.09000 * 109.62645 * 269.64154 * 20 19 18 35 35 H 1.08996 * 110.97263 * 277.99782 * 22 21 20 36 36 H 1.08996 * 111.00937 * 154.22595 * 22 21 20 37 37 H 1.08999 * 110.69279 * 206.04247 * 23 22 21 38 38 H 1.08996 * 110.84538 * 82.90280 * 23 22 21 39 39 H 1.09004 * 110.36169 * 217.02997 * 26 13 12 40 40 H 1.08995 * 110.37311 * 94.71102 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 8 0.4055 -2.6003 1.1459 11 6 2.2253 -3.7039 -0.0825 12 6 1.3625 -4.8012 -0.7430 13 7 0.2752 -4.1257 -1.4662 14 6 -0.7064 -4.7371 -2.1584 15 8 -1.6098 -4.0806 -2.6417 16 6 -0.6856 -6.1937 -2.3291 17 6 -1.5463 -6.9231 -3.0827 18 7 -1.3104 -8.2111 -3.0714 19 6 -0.3168 -8.6277 -2.3542 20 6 0.0989 -10.0696 -2.2154 21 8 1.5183 -10.1445 -2.0011 22 6 1.9364 -11.3392 -2.7041 23 6 1.0061 -11.3172 -3.9427 24 8 -0.2252 -10.7821 -3.4165 25 16 0.4568 -7.3109 -1.5862 26 6 0.4362 -2.6688 -1.3082 27 1 -0.4850 0.8401 0.0004 28 1 -0.2532 -1.8954 1.2126 29 1 3.0861 -3.4625 -0.7061 30 1 2.5434 -4.0101 0.9141 31 1 0.9473 -5.4570 0.0223 32 1 1.9670 -5.3817 -1.4401 33 1 -2.3545 -6.4795 -3.6452 34 1 -0.4211 -10.5208 -1.3703 35 1 1.7605 -12.2291 -2.0998 36 1 2.9830 -11.2720 -3.0009 37 1 0.8543 -12.3253 -4.3283 38 1 1.4087 -10.6659 -4.7185 39 1 -0.5373 -2.1877 -1.2134 40 1 0.9846 -2.2537 -2.1538 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412277789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:39 Heat of formation + Delta-G solvation = -133.046495 kcal Electronic energy + Delta-G solvation = -27307.358999 eV Core-core repulsion = 23213.880999 eV Total energy + Delta-G solvation = -4093.478000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.68761 -41.27738 -40.38417 -38.86789 -36.20453 -36.17798 -34.20318 -32.98523 -31.99236 -30.72018 -29.65477 -28.20698 -26.95759 -24.96965 -24.41466 -24.14639 -22.28885 -21.51838 -20.19423 -19.59387 -19.11489 -18.51621 -17.98465 -17.71143 -17.15930 -17.02681 -16.88072 -16.59423 -16.17231 -15.84338 -15.45455 -15.28129 -14.92957 -14.80683 -14.76396 -14.65587 -14.27029 -13.87261 -13.77675 -13.54532 -13.40567 -12.92374 -12.78662 -12.54170 -12.50421 -12.36988 -12.22896 -12.17049 -11.52060 -11.33964 -11.29517 -11.15158 -10.70343 -10.67058 -10.60778 -10.35145 -10.17981 -9.58481 -8.26120 -6.43014 -0.98691 -0.03314 0.44129 1.22338 1.41759 1.45668 1.56116 1.85129 1.97801 2.13442 2.38633 2.67975 2.99981 3.27874 3.43257 3.60045 3.67574 3.75350 4.01606 4.05041 4.07365 4.10304 4.15166 4.18986 4.26427 4.45848 4.62169 4.66874 4.75299 4.84626 4.92693 4.96671 5.00219 5.16685 5.32801 5.42465 5.74691 5.83368 6.02633 6.35610 6.46953 6.65715 6.88377 7.27532 7.35028 8.79675 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.025976 B = 0.002747 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.654025 B =10191.728270 C =10816.166524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.233 3.767 10 O -0.588 6.588 11 C -0.105 4.105 12 C 0.092 3.908 13 N -0.606 5.606 14 C 0.595 3.405 15 O -0.579 6.579 16 C -0.311 4.311 17 C 0.112 3.888 18 N -0.468 5.468 19 C -0.007 4.007 20 C 0.316 3.684 21 O -0.385 6.385 22 C 0.019 3.981 23 C 0.008 3.992 24 O -0.380 6.380 25 S 0.292 5.708 26 C 0.106 3.894 27 H 0.270 0.730 28 H 0.376 0.624 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.189 0.811 34 H 0.139 0.861 35 H 0.107 0.893 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.943 -24.076 -3.904 25.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.591 4.591 8 H 0.092 0.908 9 C 0.193 3.807 10 O -0.396 6.396 11 C -0.143 4.143 12 C -0.031 4.031 13 N -0.337 5.337 14 C 0.383 3.617 15 O -0.461 6.461 16 C -0.435 4.435 17 C -0.048 4.048 18 N -0.184 5.184 19 C -0.281 4.281 20 C 0.216 3.784 21 O -0.305 6.305 22 C -0.056 4.056 23 C -0.067 4.067 24 O -0.300 6.300 25 S 0.550 5.450 26 C -0.017 4.017 27 H 0.079 0.921 28 H 0.226 0.774 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.206 0.794 34 H 0.156 0.844 35 H 0.125 0.875 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.194 -24.452 -3.632 25.746 hybrid contribution -1.296 2.301 -0.893 2.787 sum 5.898 -22.151 -4.525 23.365 Atomic orbital electron populations 1.69778 1.07241 1.28441 1.50200 1.25844 0.95728 1.02928 0.93071 0.85386 0.79253 0.78884 0.77369 1.18547 1.21051 1.20714 1.21822 0.94125 0.90874 1.52247 0.90821 1.19869 0.86628 0.93385 0.80856 1.86075 1.51466 1.54663 1.47444 1.22637 0.97157 0.92682 1.01804 1.22356 0.88582 0.96182 0.96024 1.48644 1.26442 1.09315 1.49298 1.16756 0.81083 0.85420 0.78441 1.90779 1.36522 1.66562 1.52277 1.25814 1.07102 0.98161 1.12455 1.22258 0.98765 0.86783 0.96950 1.66180 1.17841 1.14468 1.19929 1.28482 0.97044 1.03234 0.99325 1.22309 0.83079 0.83130 0.89834 1.89242 1.19813 1.47304 1.74177 1.24802 1.02046 0.87667 0.91127 1.24589 0.83031 1.01889 0.97232 1.89046 1.31128 1.69994 1.39855 1.84029 1.26198 0.93248 1.41498 1.22996 1.00773 0.77421 1.00466 0.92092 0.77433 0.88422 0.88767 0.90267 0.88923 0.79388 0.84437 0.87522 0.84473 0.84917 0.90932 0.93229 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.47 10.69 21.45 0.23 -49.24 16 2 C 0.03 1.29 5.29 84.66 0.45 1.73 16 3 Si 0.97 41.04 29.54 68.60 2.03 43.07 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.55 -27.84 8.26 25.60 0.21 -27.63 16 8 H 0.07 3.56 7.78 -2.91 -0.02 3.53 16 9 C 0.23 11.00 0.88 -10.15 -0.01 10.99 16 10 O -0.59 -29.82 13.17 -148.98 -1.96 -31.78 16 11 C -0.11 -3.80 6.13 31.82 0.20 -3.61 16 12 C 0.09 3.02 5.20 86.76 0.45 3.47 16 13 N -0.61 -25.24 3.33 -816.30 -2.72 -27.96 16 14 C 0.59 25.17 7.81 86.45 0.67 25.85 16 15 O -0.58 -28.87 17.10 -4.29 -0.07 -28.95 16 16 C -0.31 -10.48 6.40 23.88 0.15 -10.33 16 17 C 0.11 3.58 11.09 84.23 0.93 4.51 16 18 N -0.47 -13.97 10.33 -190.30 -1.97 -15.94 16 19 C -0.01 -0.17 6.96 88.46 0.62 0.45 16 20 C 0.32 5.89 4.55 71.23 0.32 6.22 16 21 O -0.39 -6.03 10.94 -126.22 -1.38 -7.41 16 22 C 0.02 0.14 7.95 72.64 0.58 0.71 16 23 C 0.01 0.09 8.07 72.64 0.59 0.67 16 24 O -0.38 -7.44 11.07 -126.22 -1.40 -8.84 16 25 S 0.29 7.33 18.25 -56.49 -1.03 6.30 16 26 C 0.11 5.15 5.53 86.85 0.48 5.63 16 27 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 28 H 0.38 20.21 7.25 -74.05 -0.54 19.67 16 29 H 0.10 3.21 8.03 -2.39 -0.02 3.19 16 30 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.08 2.42 7.06 -2.38 -0.02 2.41 16 32 H 0.09 2.49 6.85 -2.39 -0.02 2.47 16 33 H 0.19 5.79 8.06 -2.91 -0.02 5.77 16 34 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.05 2.78 7.43 -2.38 -0.02 2.76 16 40 H 0.05 2.67 8.03 -2.39 -0.02 2.65 16 Total: -1.00 -69.70 347.50 -2.06 -71.77 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.56 Total: 30.33 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 5.64 Total: 18.66 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -4.45 Total: -93.14 kcal Atomic # 8 Polarization: -72.17 SS G_CDS: -4.81 Total: -76.98 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 16 Polarization: 7.33 SS G_CDS: -1.03 Total: 6.30 kcal Total: -69.70 -2.06 -71.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412277789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.278 kcal (2) G-P(sol) polarization free energy of solvation -69.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds