Wall clock time and date at job start Sat Apr 11 2020 05:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99636 * 2 1 4 4 H 1.48495 * 109.46964 * 269.99795 * 3 2 1 5 5 H 1.48499 * 109.46909 * 29.99855 * 3 2 1 6 6 H 1.48497 * 109.47155 * 149.99677 * 3 2 1 7 7 C 1.37875 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99907 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47120 * 299.99553 * 9 7 2 11 11 N 1.46500 * 109.46896 * 179.97438 * 9 7 2 12 12 C 1.34782 * 119.99783 * 154.99772 * 11 9 7 13 13 O 1.21504 * 120.00068 * 359.97438 * 12 11 9 14 14 C 1.48184 * 119.99695 * 180.02562 * 12 11 9 15 15 C 1.39128 * 119.69305 * 179.72987 * 14 12 11 16 16 C 1.39283 * 118.97592 * 179.79111 * 15 14 12 17 17 N 1.39942 * 120.82268 * 180.21433 * 16 15 14 18 18 C 1.35822 * 126.10029 * 184.97141 * 17 16 15 19 19 C 1.35292 * 107.61329 * 179.90367 * 18 17 16 20 20 C 1.39943 * 107.96854 * 0.36199 * 19 18 17 21 21 N 1.30830 * 108.36519 * 359.77721 * 20 19 18 22 22 C 1.39285 * 118.35470 * 0.47134 * 16 15 14 23 23 C 1.38344 * 119.27272 * 359.74421 * 22 16 15 24 24 N 1.31592 * 120.98214 * 0.02741 * 23 22 16 25 25 C 1.52997 * 109.47466 * 59.99800 * 9 7 2 26 26 F 1.39905 * 109.47157 * 59.99756 * 25 9 7 27 27 F 1.39900 * 109.47010 * 300.00147 * 25 9 7 28 28 F 1.39897 * 109.47422 * 179.97438 * 25 9 7 29 29 H 0.96997 * 120.00148 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00274 * 335.00063 * 11 9 7 31 31 H 1.08007 * 120.50961 * 359.97438 * 15 14 12 32 32 H 1.08002 * 126.19212 * 0.03303 * 18 17 16 33 33 H 1.07998 * 126.00977 * 180.13730 * 19 18 17 34 34 H 1.07999 * 125.81371 * 179.74685 * 20 19 18 35 35 H 1.07995 * 120.35993 * 179.72677 * 22 16 15 36 36 H 1.08004 * 119.50543 * 180.02562 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 2.2032 -3.6126 0.0005 12 6 1.8371 -4.8122 0.4939 13 8 0.7176 -4.9701 0.9390 14 6 2.8003 -5.9383 0.4944 15 6 2.4176 -7.1724 1.0104 16 6 3.3334 -8.2217 0.9994 17 7 2.9879 -9.4803 1.5044 18 6 3.8193 -10.5464 1.6338 19 6 3.1008 -11.5643 2.1611 20 6 1.7900 -11.1133 2.3532 21 7 1.7212 -9.8672 1.9608 22 6 4.6034 -7.9859 0.4783 23 6 4.9106 -6.7294 -0.0124 24 7 4.0224 -5.7587 0.0072 25 6 0.3720 -2.5805 -1.2490 26 9 1.1766 -2.5066 -2.3910 27 9 -0.5372 -1.5172 -1.2495 28 9 -0.3271 -3.7923 -1.2492 29 1 -0.4850 0.8400 -0.0004 30 1 3.0970 -3.4864 -0.3545 31 1 1.4246 -7.3153 1.4105 32 1 4.8653 -10.5756 1.3664 33 1 3.4725 -12.5522 2.3898 34 1 0.9743 -11.6951 2.7563 35 1 5.3402 -8.7752 0.4580 36 1 5.8941 -6.5426 -0.4177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412309533.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:44 Heat of formation + Delta-G solvation = -43.007593 kcal Electronic energy + Delta-G solvation = -29056.730389 eV Core-core repulsion = 24322.148828 eV Total energy + Delta-G solvation = -4734.581561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.34647 -45.99898 -45.60984 -41.87842 -40.38858 -38.53498 -34.84179 -34.56580 -32.58893 -31.77601 -30.69827 -30.03538 -28.45309 -24.99076 -24.52545 -24.14810 -22.31509 -21.28045 -21.03692 -19.99770 -18.87881 -17.51727 -16.92241 -16.75096 -16.59055 -16.31745 -16.09594 -15.70077 -15.48418 -15.08783 -14.91960 -14.55696 -14.36425 -14.17543 -13.86782 -13.36522 -13.18759 -13.09508 -12.91067 -12.53809 -12.39879 -12.29207 -12.19817 -11.97015 -11.81091 -11.21799 -11.17002 -11.10058 -10.88695 -10.81201 -10.42938 -10.08742 -9.66650 -9.64207 -9.44844 -9.44468 -8.75157 -8.73050 -8.30420 -6.23523 -4.47425 0.30612 0.66842 1.81905 1.92210 2.42187 2.97413 3.20346 3.25986 3.28602 3.47529 3.88605 4.04485 4.17608 4.26049 4.29217 4.54134 4.56222 4.58667 4.80775 4.93269 5.06736 5.16400 5.26264 5.32424 5.54427 5.56225 5.74719 5.83539 5.86784 6.17754 6.21684 6.23957 6.69129 6.88440 7.09998 7.23409 7.43751 7.60905 7.62864 8.27658 8.48688 8.75943 9.20080 10.68248 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.021469 B = 0.002855 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.863557 B = 9805.610699 C =10356.314696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.065 3.935 3 Si 0.917 3.083 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.242 3.758 10 H 0.088 0.912 11 N -0.685 5.685 12 C 0.558 3.442 13 O -0.522 6.522 14 C 0.121 3.879 15 C -0.118 4.118 16 C 0.198 3.802 17 N -0.329 5.329 18 C 0.053 3.947 19 C -0.256 4.256 20 C 0.058 3.942 21 N -0.278 5.278 22 C -0.185 4.185 23 C 0.128 3.872 24 N -0.462 5.462 25 C 0.417 3.583 26 F -0.208 7.208 27 F -0.135 7.135 28 F -0.218 7.218 29 H 0.269 0.731 30 H 0.410 0.590 31 H 0.163 0.837 32 H 0.181 0.819 33 H 0.157 0.843 34 H 0.193 0.807 35 H 0.145 0.855 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.702 -18.728 2.022 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.098 0.902 9 C 0.137 3.863 10 H 0.105 0.895 11 N -0.334 5.334 12 C 0.341 3.659 13 O -0.398 6.398 14 C -0.017 4.017 15 C -0.141 4.141 16 C 0.098 3.902 17 N -0.105 5.105 18 C -0.088 4.088 19 C -0.285 4.285 20 C -0.131 4.131 21 N -0.095 5.095 22 C -0.209 4.209 23 C -0.031 4.031 24 N -0.174 5.174 25 C 0.361 3.639 26 F -0.190 7.190 27 F -0.116 7.116 28 F -0.200 7.200 29 H 0.079 0.921 30 H 0.246 0.754 31 H 0.180 0.820 32 H 0.198 0.802 33 H 0.174 0.826 34 H 0.209 0.791 35 H 0.162 0.838 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 9.130 -16.754 1.839 19.168 hybrid contribution 1.029 -0.891 -0.073 1.363 sum 10.159 -17.645 1.766 20.437 Atomic orbital electron populations 1.70398 1.05868 1.27431 1.43612 1.25086 0.95167 1.00145 0.93993 0.86186 0.79555 0.81505 0.78461 1.20177 1.20809 1.19417 1.20882 0.93923 0.87903 1.56116 0.90222 1.19843 0.88730 0.85730 0.91984 0.89461 1.45941 1.17834 1.09621 1.60034 1.17805 0.86123 0.82515 0.79461 1.90812 1.19841 1.82604 1.46504 1.21360 0.91564 0.93543 0.95263 1.21863 1.01712 0.90800 0.99678 1.17648 0.94160 0.82712 0.95728 1.45973 1.08019 1.08275 1.48266 1.22816 0.97970 0.86983 1.00998 1.21662 0.94101 1.01262 1.11435 1.24201 0.98175 0.92338 0.98347 1.77618 0.98806 1.14993 1.18112 1.21983 0.95230 1.00598 1.03053 1.22697 0.98875 0.87037 0.94527 1.67668 1.01472 1.34099 1.14188 1.23105 0.80850 0.72850 0.87118 1.92998 1.74356 1.96174 1.55431 1.93409 1.68333 1.53704 1.96198 1.93071 1.81512 1.48415 1.96977 0.92075 0.75357 0.81972 0.80231 0.82561 0.79055 0.83760 0.80981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.11 9.50 55.43 0.53 -22.58 16 2 C 0.06 1.70 5.20 -17.82 -0.09 1.60 16 3 Si 0.92 20.20 29.54 -169.99 -5.02 15.17 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 7 C -0.55 -14.23 8.46 -34.44 -0.29 -14.53 16 8 H 0.08 1.95 7.74 -52.49 -0.41 1.54 16 9 C 0.24 6.14 2.21 -69.09 -0.15 5.99 16 10 H 0.09 2.43 7.58 -51.93 -0.39 2.04 16 11 N -0.69 -14.85 4.97 -55.77 -0.28 -15.13 16 12 C 0.56 11.76 7.34 -12.17 -0.09 11.67 16 13 O -0.52 -12.53 14.89 5.36 0.08 -12.45 16 14 C 0.12 2.06 6.75 -83.04 -0.56 1.50 16 15 C -0.12 -1.84 9.26 -38.86 -0.36 -2.20 16 16 C 0.20 2.49 6.72 -83.38 -0.56 1.93 16 17 N -0.33 -3.90 3.81 -10.41 -0.04 -3.94 16 18 C 0.05 0.43 10.85 -16.83 -0.18 0.25 16 19 C -0.26 -1.92 10.80 -39.99 -0.43 -2.35 16 20 C 0.06 0.54 12.02 -17.34 -0.21 0.33 16 21 N -0.28 -3.64 11.98 30.64 0.37 -3.27 16 22 C -0.19 -1.71 9.54 -39.15 -0.37 -2.08 16 23 C 0.13 1.31 11.17 -17.62 -0.20 1.11 16 24 N -0.46 -6.71 9.54 -9.86 -0.09 -6.80 16 25 C 0.42 10.90 2.81 37.16 0.10 11.00 16 26 F -0.21 -5.25 16.94 2.25 0.04 -5.21 16 27 F -0.14 -3.78 12.91 2.25 0.03 -3.75 16 28 F -0.22 -5.65 15.67 2.25 0.04 -5.61 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.41 8.09 7.87 -40.82 -0.32 7.77 16 31 H 0.16 2.79 7.39 -52.48 -0.39 2.40 16 32 H 0.18 0.74 7.16 -52.49 -0.38 0.37 16 33 H 0.16 0.70 8.06 -52.49 -0.42 0.27 16 34 H 0.19 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.14 0.74 6.90 -52.49 -0.36 0.38 16 36 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 331.32 15.07 4.99 4.99 Total: -1.00 -33.04 331.32 -5.41 -38.45 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -2.65 Total: 5.91 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: -3.40 Total: 14.21 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.48 Total: -51.72 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.08 Total: -12.45 kcal Atomic # 9 Polarization: -14.68 SS G_CDS: 0.10 Total: -14.57 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.04 -5.41 -38.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412309533.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.556 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds