Wall clock time and date at job start Sat Apr 11 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99636 * 2 1 4 4 H 1.48495 * 109.46964 * 269.99795 * 3 2 1 5 5 H 1.48499 * 109.46909 * 29.99855 * 3 2 1 6 6 H 1.48497 * 109.47155 * 149.99677 * 3 2 1 7 7 C 1.37875 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99907 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47120 * 299.99553 * 9 7 2 11 11 N 1.46500 * 109.46896 * 179.97438 * 9 7 2 12 12 C 1.34782 * 119.99783 * 154.99772 * 11 9 7 13 13 O 1.21504 * 120.00068 * 359.97438 * 12 11 9 14 14 C 1.48184 * 119.99695 * 180.02562 * 12 11 9 15 15 C 1.39128 * 119.69305 * 179.72987 * 14 12 11 16 16 C 1.39283 * 118.97592 * 179.79111 * 15 14 12 17 17 N 1.39942 * 120.82268 * 180.21433 * 16 15 14 18 18 C 1.35822 * 126.10029 * 184.97141 * 17 16 15 19 19 C 1.35292 * 107.61329 * 179.90367 * 18 17 16 20 20 C 1.39943 * 107.96854 * 0.36199 * 19 18 17 21 21 N 1.30830 * 108.36519 * 359.77721 * 20 19 18 22 22 C 1.39285 * 118.35470 * 0.47134 * 16 15 14 23 23 C 1.38344 * 119.27272 * 359.74421 * 22 16 15 24 24 N 1.31592 * 120.98214 * 0.02741 * 23 22 16 25 25 C 1.52997 * 109.47466 * 59.99800 * 9 7 2 26 26 F 1.39905 * 109.47157 * 59.99756 * 25 9 7 27 27 F 1.39900 * 109.47010 * 300.00147 * 25 9 7 28 28 F 1.39897 * 109.47422 * 179.97438 * 25 9 7 29 29 H 0.96997 * 120.00148 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00274 * 335.00063 * 11 9 7 31 31 H 1.08007 * 120.50961 * 359.97438 * 15 14 12 32 32 H 1.08002 * 126.19212 * 0.03303 * 18 17 16 33 33 H 1.07998 * 126.00977 * 180.13730 * 19 18 17 34 34 H 1.07999 * 125.81371 * 179.74685 * 20 19 18 35 35 H 1.07995 * 120.35993 * 179.72677 * 22 16 15 36 36 H 1.08004 * 119.50543 * 180.02562 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 2.2032 -3.6126 0.0005 12 6 1.8371 -4.8122 0.4939 13 8 0.7176 -4.9701 0.9390 14 6 2.8003 -5.9383 0.4944 15 6 2.4176 -7.1724 1.0104 16 6 3.3334 -8.2217 0.9994 17 7 2.9879 -9.4803 1.5044 18 6 3.8193 -10.5464 1.6338 19 6 3.1008 -11.5643 2.1611 20 6 1.7900 -11.1133 2.3532 21 7 1.7212 -9.8672 1.9608 22 6 4.6034 -7.9859 0.4783 23 6 4.9106 -6.7294 -0.0124 24 7 4.0224 -5.7587 0.0072 25 6 0.3720 -2.5805 -1.2490 26 9 1.1766 -2.5066 -2.3910 27 9 -0.5372 -1.5172 -1.2495 28 9 -0.3271 -3.7923 -1.2492 29 1 -0.4850 0.8400 -0.0004 30 1 3.0970 -3.4864 -0.3545 31 1 1.4246 -7.3153 1.4105 32 1 4.8653 -10.5756 1.3664 33 1 3.4725 -12.5522 2.3898 34 1 0.9743 -11.6951 2.7563 35 1 5.3402 -8.7752 0.4580 36 1 5.8941 -6.5426 -0.4177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412309533.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:43 Heat of formation + Delta-G solvation = -66.242341 kcal Electronic energy + Delta-G solvation = -29057.737923 eV Core-core repulsion = 24322.148828 eV Total energy + Delta-G solvation = -4735.589095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.47898 -48.11587 -47.77919 -42.63795 -41.51530 -40.03209 -36.65691 -35.54526 -34.48067 -32.83414 -31.54027 -30.81926 -30.26307 -26.69573 -26.03348 -25.09736 -23.69229 -22.64281 -21.83246 -21.42887 -20.08358 -19.07997 -18.92989 -18.71369 -18.26939 -17.87708 -17.00796 -16.99459 -16.68240 -16.52383 -16.30408 -15.94981 -15.65249 -15.10587 -15.03689 -15.00907 -14.62526 -14.52600 -14.51821 -14.43180 -14.33993 -14.07776 -13.92294 -13.70584 -13.19723 -13.08055 -12.80105 -12.66841 -12.24464 -12.07620 -11.81094 -11.61594 -11.44880 -10.79119 -10.71652 -10.50278 -10.37744 -10.14694 -9.50749 -8.23638 -6.55303 -0.65399 -0.29751 1.04361 1.18389 1.46379 1.47551 1.59350 1.63477 1.82205 1.96494 2.36553 2.44887 2.71984 2.91201 3.02206 3.26420 3.53174 3.68611 3.74613 3.79903 3.88793 4.00927 4.04159 4.19044 4.35845 4.53950 4.58657 4.70486 4.80455 4.88564 5.02431 5.27353 5.32050 5.48813 5.59563 5.60762 6.00567 6.41911 6.49189 6.54300 6.73870 7.06676 7.19484 8.69537 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.021469 B = 0.002855 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.863557 B = 9805.610699 C =10356.314696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.015 3.985 3 Si 0.987 3.013 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.256 1.256 7 C -0.563 4.563 8 H 0.093 0.907 9 C 0.249 3.751 10 H 0.051 0.949 11 N -0.682 5.682 12 C 0.554 3.446 13 O -0.566 6.566 14 C 0.097 3.903 15 C -0.136 4.136 16 C 0.194 3.806 17 N -0.347 5.347 18 C 0.055 3.945 19 C -0.254 4.254 20 C 0.057 3.943 21 N -0.347 5.347 22 C -0.151 4.151 23 C 0.135 3.865 24 N -0.481 5.481 25 C 0.414 3.586 26 F -0.202 7.202 27 F -0.147 7.147 28 F -0.220 7.220 29 H 0.270 0.730 30 H 0.420 0.580 31 H 0.129 0.871 32 H 0.227 0.773 33 H 0.191 0.809 34 H 0.216 0.784 35 H 0.201 0.799 36 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.087 -20.735 1.654 25.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.190 4.190 3 Si 0.810 3.190 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.180 1.180 7 C -0.599 4.599 8 H 0.111 0.889 9 C 0.142 3.858 10 H 0.069 0.931 11 N -0.331 5.331 12 C 0.339 3.661 13 O -0.444 6.444 14 C -0.040 4.040 15 C -0.160 4.160 16 C 0.092 3.908 17 N -0.125 5.125 18 C -0.084 4.084 19 C -0.282 4.282 20 C -0.131 4.131 21 N -0.165 5.165 22 C -0.173 4.173 23 C -0.025 4.025 24 N -0.194 5.194 25 C 0.358 3.642 26 F -0.183 7.183 27 F -0.128 7.128 28 F -0.202 7.202 29 H 0.080 0.920 30 H 0.258 0.742 31 H 0.147 0.853 32 H 0.243 0.757 33 H 0.208 0.792 34 H 0.232 0.768 35 H 0.218 0.782 36 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 13.538 -18.801 1.474 23.215 hybrid contribution -0.279 -0.523 0.071 0.597 sum 13.259 -19.324 1.545 23.486 Atomic orbital electron populations 1.70527 1.07538 1.28335 1.44446 1.26038 0.95950 1.03781 0.93262 0.85103 0.78577 0.76759 0.78567 1.19769 1.20631 1.17982 1.21208 0.94581 0.88096 1.56034 0.88929 1.19465 0.88900 0.87314 0.90095 0.93136 1.45774 1.17580 1.09204 1.60580 1.18497 0.86489 0.83163 0.77907 1.90765 1.22086 1.83439 1.48148 1.20541 0.92302 0.92193 0.98943 1.21596 1.01453 0.91929 1.00994 1.17844 0.94743 0.82457 0.95732 1.46069 1.08418 1.08703 1.49277 1.23693 0.99521 0.85530 0.99637 1.22149 0.92964 1.02627 1.10457 1.24835 1.00075 0.91464 0.96685 1.77606 1.00757 1.17218 1.20907 1.22571 0.94211 1.01474 0.99055 1.23599 0.99487 0.86375 0.92992 1.67601 1.00848 1.36208 1.14719 1.23267 0.80823 0.72423 0.87708 1.92992 1.74100 1.96140 1.55109 1.93383 1.68842 1.54303 1.96304 1.93061 1.81643 1.48515 1.97023 0.92011 0.74194 0.85283 0.75656 0.79159 0.76755 0.78168 0.76028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.48 9.50 21.45 0.20 -49.28 16 2 C 0.02 0.79 5.20 84.65 0.44 1.23 16 3 Si 0.99 41.26 29.54 68.60 2.03 43.28 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 7 C -0.56 -29.54 8.46 25.60 0.22 -29.32 16 8 H 0.09 4.51 7.74 -2.91 -0.02 4.48 16 9 C 0.25 13.22 2.21 44.24 0.10 13.32 16 10 H 0.05 3.04 7.58 -2.39 -0.02 3.03 16 11 N -0.68 -30.89 4.97 -448.66 -2.23 -33.12 16 12 C 0.55 24.94 7.34 86.89 0.64 25.57 16 13 O -0.57 -29.67 14.89 -3.73 -0.06 -29.72 16 14 C 0.10 3.42 6.75 41.86 0.28 3.70 16 15 C -0.14 -4.49 9.26 22.74 0.21 -4.28 16 16 C 0.19 4.58 6.72 38.35 0.26 4.84 16 17 N -0.35 -7.68 3.81 -186.85 -0.71 -8.40 16 18 C 0.06 0.67 10.85 83.40 0.91 1.58 16 19 C -0.25 -2.93 10.80 22.00 0.24 -2.69 16 20 C 0.06 0.99 12.02 85.26 1.02 2.02 16 21 N -0.35 -9.24 11.98 -56.98 -0.68 -9.92 16 22 C -0.15 -2.07 9.54 22.55 0.22 -1.85 16 23 C 0.14 2.19 11.17 84.75 0.95 3.14 16 24 N -0.48 -13.38 9.54 -185.12 -1.77 -15.14 16 25 C 0.41 22.55 2.81 71.98 0.20 22.76 16 26 F -0.20 -10.39 16.94 44.97 0.76 -9.63 16 27 F -0.15 -8.56 12.91 44.97 0.58 -7.98 16 28 F -0.22 -12.06 15.67 44.97 0.70 -11.36 16 29 H 0.27 14.41 8.31 -92.71 -0.77 13.63 16 30 H 0.42 16.94 7.87 -92.71 -0.73 16.21 16 31 H 0.13 5.02 7.39 -2.91 -0.02 5.00 16 32 H 0.23 0.31 7.16 -2.91 -0.02 0.29 16 33 H 0.19 0.77 8.06 -2.91 -0.02 0.75 16 34 H 0.22 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.20 0.47 6.90 -2.91 -0.02 0.45 16 36 H 0.22 1.32 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -79.55 331.32 4.95 -74.59 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.45 Total: 16.66 kcal Atomic # 6 Polarization: 34.33 SS G_CDS: 5.67 Total: 40.00 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -5.19 Total: -115.86 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.06 Total: -29.72 kcal Atomic # 9 Polarization: -31.01 SS G_CDS: 2.05 Total: -28.96 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Total: -79.55 4.95 -74.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412309533.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.352 kcal (2) G-P(sol) polarization free energy of solvation -79.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds