Wall clock time and date at job start Sat Apr 11 2020 05:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99926 * 2 1 4 4 H 1.48496 * 109.46775 * 264.80996 * 3 2 1 5 5 H 1.48495 * 109.47100 * 24.80957 * 3 2 1 6 6 H 1.48496 * 109.46982 * 144.81011 * 3 2 1 7 7 C 1.37870 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00088 * 4.87586 * 7 2 1 9 9 C 1.50704 * 120.00206 * 184.87554 * 7 2 1 10 10 H 1.09000 * 109.46717 * 334.94957 * 9 7 2 11 11 N 1.46506 * 109.46824 * 94.93995 * 9 7 2 12 12 C 1.34773 * 119.99613 * 205.00052 * 11 9 7 13 13 O 1.21577 * 120.00291 * 0.02562 * 12 11 9 14 14 C 1.47671 * 119.99893 * 180.02562 * 12 11 9 15 15 C 1.40228 * 120.49684 * 180.02562 * 14 12 11 16 16 C 1.38035 * 118.35495 * 180.02562 * 15 14 12 17 17 C 1.39156 * 119.25564 * 359.97438 * 16 15 14 18 18 N 1.39493 * 119.53242 * 179.97438 * 17 16 15 19 19 C 1.35909 * 126.10836 * 179.97438 * 18 17 16 20 20 C 1.35245 * 107.60532 * 179.72995 * 19 18 17 21 21 C 1.40003 * 107.96951 * 0.39773 * 20 19 18 22 22 N 1.30792 * 108.37597 * 359.59505 * 21 20 19 23 23 N 1.32450 * 120.94071 * 0.25350 * 17 16 15 24 24 C 1.31628 * 121.79817 * 359.47709 * 23 17 16 25 25 C 1.53002 * 109.47310 * 214.94377 * 9 7 2 26 26 F 1.39901 * 109.46763 * 294.93522 * 25 9 7 27 27 F 1.39898 * 109.47205 * 54.93805 * 25 9 7 28 28 F 1.39900 * 109.46641 * 174.93565 * 25 9 7 29 29 H 0.97006 * 120.00143 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99858 * 25.00643 * 11 9 7 31 31 H 1.08000 * 120.82406 * 0.03738 * 15 14 12 32 32 H 1.08001 * 120.37086 * 179.97438 * 16 15 14 33 33 H 1.07998 * 126.19965 * 359.97438 * 19 18 17 34 34 H 1.07999 * 126.01835 * 180.26208 * 20 19 18 35 35 H 1.07998 * 125.80899 * 179.86484 * 21 20 19 36 36 H 1.08005 * 119.67571 * 180.26662 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6063 1.9831 -1.3943 5 1 1.3961 2.6819 0.5875 6 1 3.4875 1.4744 0.8068 7 6 2.0045 -1.1940 0.0005 8 1 1.4674 -2.1277 -0.0785 9 6 3.5074 -1.1964 0.1115 10 1 3.9003 -0.2485 -0.2562 11 7 3.8933 -1.3739 1.5136 12 6 5.0873 -0.9227 1.9461 13 8 5.8440 -0.3681 1.1729 14 6 5.4765 -1.1021 3.3593 15 6 6.7161 -0.6363 3.8207 16 6 7.0350 -0.8279 5.1499 17 6 6.1237 -1.4710 5.9820 18 7 6.4402 -1.6681 7.3262 19 6 5.6542 -2.2762 8.2533 20 6 6.3260 -2.2694 9.4271 21 6 7.5547 -1.6318 9.2177 22 7 7.6254 -1.2750 7.9614 23 7 4.9623 -1.9035 5.5147 24 6 4.6160 -1.7372 4.2557 25 6 4.0787 -2.3438 -0.7240 26 9 3.6668 -3.5657 -0.1812 27 9 3.6156 -2.2382 -2.0398 28 9 5.4760 -2.2766 -0.7146 29 1 -0.4851 0.8401 0.0004 30 1 3.2894 -1.8161 2.1306 31 1 7.4042 -0.1398 3.1526 32 1 7.9811 -0.4825 5.5398 33 1 4.6727 -2.6932 8.0827 34 1 5.9754 -2.6811 10.3619 35 1 8.3165 -1.4670 9.9653 36 1 3.6584 -2.0999 3.9122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412311765.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:48 Heat of formation + Delta-G solvation = -65.096802 kcal Electronic energy + Delta-G solvation = -28927.734045 eV Core-core repulsion = 24192.194624 eV Total energy + Delta-G solvation = -4735.539421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.13143 -46.65667 -46.60839 -41.82605 -40.41665 -38.72737 -35.01637 -33.90973 -32.86152 -32.59743 -30.78709 -30.25036 -28.67045 -25.06207 -24.85318 -24.07131 -22.06930 -21.25496 -21.05295 -20.23083 -18.80671 -18.50035 -17.63964 -17.34519 -16.93693 -16.55464 -16.48821 -15.81894 -15.48616 -15.13251 -14.76711 -14.45654 -14.39234 -13.91734 -13.57215 -13.55517 -13.46207 -13.39518 -13.15259 -13.08134 -13.00863 -12.90604 -12.82302 -12.75279 -12.58452 -11.90629 -11.24812 -11.19578 -10.84261 -10.64055 -10.27384 -10.17188 -10.14451 -9.90340 -9.58890 -9.47336 -9.06486 -8.67391 -8.46789 -6.62306 -4.78643 0.18533 0.95769 1.67947 1.82725 2.45536 3.02157 3.03943 3.14433 3.21646 3.42587 3.71204 3.91485 3.95274 4.01970 4.20221 4.58328 4.62361 4.71149 4.76171 4.85755 4.93407 5.09119 5.14305 5.17255 5.34880 5.38038 5.43708 5.61276 5.70653 5.90239 6.10800 6.19535 6.23294 6.76251 6.78261 6.93385 7.05684 7.58070 7.73349 8.10454 8.42890 8.58550 8.92969 10.45737 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.016054 B = 0.003104 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.669020 B = 9017.267079 C = 9571.052198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.101 3.899 3 Si 0.866 3.134 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.254 1.254 7 C -0.539 4.539 8 H 0.095 0.905 9 C 0.203 3.797 10 H 0.092 0.908 11 N -0.704 5.704 12 C 0.549 3.451 13 O -0.535 6.535 14 C -0.189 4.189 15 C 0.004 3.996 16 C -0.172 4.172 17 C 0.381 3.619 18 N -0.326 5.326 19 C 0.082 3.918 20 C -0.267 4.267 21 C 0.064 3.936 22 N -0.285 5.285 23 N -0.508 5.508 24 C 0.171 3.829 25 C 0.438 3.562 26 F -0.192 7.192 27 F -0.180 7.180 28 F -0.195 7.195 29 H 0.277 0.723 30 H 0.400 0.600 31 H 0.158 0.842 32 H 0.153 0.847 33 H 0.185 0.815 34 H 0.157 0.843 35 H 0.193 0.807 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.114 -2.978 14.576 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.109 4.109 3 Si 0.691 3.309 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.178 1.178 7 C -0.576 4.576 8 H 0.113 0.887 9 C 0.100 3.900 10 H 0.110 0.890 11 N -0.356 5.356 12 C 0.334 3.666 13 O -0.413 6.413 14 C -0.195 4.195 15 C -0.023 4.023 16 C -0.195 4.195 17 C 0.154 3.846 18 N -0.104 5.104 19 C -0.059 4.059 20 C -0.296 4.296 21 C -0.125 4.125 22 N -0.103 5.103 23 N -0.221 5.221 24 C 0.011 3.989 25 C 0.382 3.618 26 F -0.173 7.173 27 F -0.161 7.161 28 F -0.177 7.177 29 H 0.087 0.913 30 H 0.237 0.763 31 H 0.175 0.825 32 H 0.171 0.829 33 H 0.202 0.798 34 H 0.174 0.826 35 H 0.210 0.790 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 10.557 -2.355 13.580 17.362 hybrid contribution 0.114 0.386 0.356 0.537 sum 10.672 -1.969 13.936 17.663 Atomic orbital electron populations 1.69849 1.06413 1.28554 1.43912 1.24998 0.94822 0.99283 0.91841 0.86961 0.80853 0.82866 0.80267 1.18870 1.20398 1.17810 1.20728 0.86128 0.96536 1.54205 0.88655 1.20063 0.97984 0.92397 0.79562 0.88999 1.47481 1.16909 1.58639 1.12593 1.18209 0.82577 0.79466 0.86354 1.90764 1.51556 1.42850 1.56105 1.21278 0.97222 1.04633 0.96364 1.21674 0.94615 0.91865 0.94144 1.21554 1.01570 1.02896 0.93431 1.17856 0.90914 0.94067 0.81790 1.45763 1.13880 1.44924 1.05810 1.23010 0.98240 0.96262 0.88382 1.21692 0.96722 1.11683 0.99466 1.24189 0.98137 0.96452 0.93705 1.77464 1.01752 1.22993 1.08114 1.66863 1.16336 1.21773 1.17154 1.22842 0.98576 0.91561 0.85874 1.21664 0.74930 0.85148 0.80019 1.93073 1.90265 1.48114 1.85884 1.93115 1.88694 1.96175 1.38164 1.93148 1.31483 1.96527 1.96547 0.91296 0.76322 0.82484 0.82946 0.79816 0.82552 0.78986 0.80701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.71 13.96 55.43 0.77 -21.93 16 2 C 0.10 2.55 5.47 -17.82 -0.10 2.45 16 3 Si 0.87 19.44 26.99 -169.99 -4.59 14.85 16 4 H -0.26 -5.92 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 6 H -0.25 -5.75 6.82 56.52 0.39 -5.36 16 7 C -0.54 -13.15 8.52 -34.44 -0.29 -13.44 16 8 H 0.10 2.51 8.00 -52.48 -0.42 2.09 16 9 C 0.20 4.47 1.71 -69.08 -0.12 4.35 16 10 H 0.09 2.15 4.73 -51.93 -0.25 1.91 16 11 N -0.70 -13.38 4.86 -55.93 -0.27 -13.65 16 12 C 0.55 10.21 7.42 -12.41 -0.09 10.11 16 13 O -0.53 -11.48 14.98 5.30 0.08 -11.40 16 14 C -0.19 -2.84 5.89 -104.81 -0.62 -3.46 16 15 C 0.00 0.05 9.70 -38.91 -0.38 -0.33 16 16 C -0.17 -2.17 9.68 -39.31 -0.38 -2.55 16 17 C 0.38 5.13 7.55 -154.49 -1.17 3.96 16 18 N -0.33 -4.09 3.80 -12.10 -0.05 -4.14 16 19 C 0.08 0.85 11.09 -16.81 -0.19 0.66 16 20 C -0.27 -2.22 10.80 -39.99 -0.43 -2.65 16 21 C 0.06 0.56 12.02 -17.33 -0.21 0.35 16 22 N -0.28 -3.38 11.81 30.64 0.36 -3.02 16 23 N -0.51 -6.87 9.83 -11.99 -0.12 -6.98 16 24 C 0.17 2.29 10.71 -17.15 -0.18 2.10 16 25 C 0.44 9.42 2.83 37.16 0.11 9.53 16 26 F -0.19 -3.96 16.93 2.25 0.04 -3.92 16 27 F -0.18 -3.97 16.89 2.25 0.04 -3.93 16 28 F -0.20 -4.18 15.83 2.25 0.04 -4.15 16 29 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.40 6.60 6.65 -40.82 -0.27 6.33 16 31 H 0.16 1.98 7.73 -52.49 -0.41 1.57 16 32 H 0.15 1.71 7.67 -52.49 -0.40 1.31 16 33 H 0.18 1.58 8.05 -52.49 -0.42 1.15 16 34 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 35 H 0.19 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.18 1.99 6.41 -52.48 -0.34 1.65 16 LS Contribution 333.97 15.07 5.03 5.03 Total: -1.00 -30.12 333.97 -5.21 -35.33 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -2.50 Total: 6.83 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: -4.05 Total: 11.08 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.70 Total: -49.73 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 9 Polarization: -12.11 SS G_CDS: 0.11 Total: -12.00 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.59 Total: 14.85 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.12 -5.21 -35.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412311765.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.764 kcal (2) G-P(sol) polarization free energy of solvation -30.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds