Wall clock time and date at job start Sat Apr 11 2020 05:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99926 * 2 1 4 4 H 1.48496 * 109.46775 * 264.80996 * 3 2 1 5 5 H 1.48495 * 109.47100 * 24.80957 * 3 2 1 6 6 H 1.48496 * 109.46982 * 144.81011 * 3 2 1 7 7 C 1.37870 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00088 * 4.87586 * 7 2 1 9 9 C 1.50704 * 120.00206 * 184.87554 * 7 2 1 10 10 H 1.09000 * 109.46717 * 334.94957 * 9 7 2 11 11 N 1.46506 * 109.46824 * 94.93995 * 9 7 2 12 12 C 1.34773 * 119.99613 * 205.00052 * 11 9 7 13 13 O 1.21577 * 120.00291 * 0.02562 * 12 11 9 14 14 C 1.47671 * 119.99893 * 180.02562 * 12 11 9 15 15 C 1.40228 * 120.49684 * 180.02562 * 14 12 11 16 16 C 1.38035 * 118.35495 * 180.02562 * 15 14 12 17 17 C 1.39156 * 119.25564 * 359.97438 * 16 15 14 18 18 N 1.39493 * 119.53242 * 179.97438 * 17 16 15 19 19 C 1.35909 * 126.10836 * 179.97438 * 18 17 16 20 20 C 1.35245 * 107.60532 * 179.72995 * 19 18 17 21 21 C 1.40003 * 107.96951 * 0.39773 * 20 19 18 22 22 N 1.30792 * 108.37597 * 359.59505 * 21 20 19 23 23 N 1.32450 * 120.94071 * 0.25350 * 17 16 15 24 24 C 1.31628 * 121.79817 * 359.47709 * 23 17 16 25 25 C 1.53002 * 109.47310 * 214.94377 * 9 7 2 26 26 F 1.39901 * 109.46763 * 294.93522 * 25 9 7 27 27 F 1.39898 * 109.47205 * 54.93805 * 25 9 7 28 28 F 1.39900 * 109.46641 * 174.93565 * 25 9 7 29 29 H 0.97006 * 120.00143 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99858 * 25.00643 * 11 9 7 31 31 H 1.08000 * 120.82406 * 0.03738 * 15 14 12 32 32 H 1.08001 * 120.37086 * 179.97438 * 16 15 14 33 33 H 1.07998 * 126.19965 * 359.97438 * 19 18 17 34 34 H 1.07999 * 126.01835 * 180.26208 * 20 19 18 35 35 H 1.07998 * 125.80899 * 179.86484 * 21 20 19 36 36 H 1.08005 * 119.67571 * 180.26662 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6063 1.9831 -1.3943 5 1 1.3961 2.6819 0.5875 6 1 3.4875 1.4744 0.8068 7 6 2.0045 -1.1940 0.0005 8 1 1.4674 -2.1277 -0.0785 9 6 3.5074 -1.1964 0.1115 10 1 3.9003 -0.2485 -0.2562 11 7 3.8933 -1.3739 1.5136 12 6 5.0873 -0.9227 1.9461 13 8 5.8440 -0.3681 1.1729 14 6 5.4765 -1.1021 3.3593 15 6 6.7161 -0.6363 3.8207 16 6 7.0350 -0.8279 5.1499 17 6 6.1237 -1.4710 5.9820 18 7 6.4402 -1.6681 7.3262 19 6 5.6542 -2.2762 8.2533 20 6 6.3260 -2.2694 9.4271 21 6 7.5547 -1.6318 9.2177 22 7 7.6254 -1.2750 7.9614 23 7 4.9623 -1.9035 5.5147 24 6 4.6160 -1.7372 4.2557 25 6 4.0787 -2.3438 -0.7240 26 9 3.6668 -3.5657 -0.1812 27 9 3.6156 -2.2382 -2.0398 28 9 5.4760 -2.2766 -0.7146 29 1 -0.4851 0.8401 0.0004 30 1 3.2894 -1.8161 2.1306 31 1 7.4042 -0.1398 3.1526 32 1 7.9811 -0.4825 5.5398 33 1 4.6727 -2.6932 8.0827 34 1 5.9754 -2.6811 10.3619 35 1 8.3165 -1.4670 9.9653 36 1 3.6584 -2.0999 3.9122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412311765.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:47 Heat of formation + Delta-G solvation = -83.599634 kcal Electronic energy + Delta-G solvation = -28928.536388 eV Core-core repulsion = 24192.194624 eV Total energy + Delta-G solvation = -4736.341764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.88029 -48.39053 -48.36753 -42.65584 -41.53045 -40.10583 -36.71528 -34.94803 -34.49461 -33.76500 -31.92444 -31.23234 -30.01409 -26.91327 -25.93746 -25.07455 -23.46623 -22.47905 -21.86837 -21.57579 -20.30110 -19.57094 -19.36483 -18.90537 -18.52932 -18.31510 -17.78154 -16.77047 -16.71123 -16.36218 -16.08743 -15.83914 -15.49639 -15.27927 -15.24682 -14.98564 -14.82835 -14.72130 -14.58906 -14.56392 -14.51278 -14.37249 -14.27212 -13.99399 -13.69863 -13.66778 -13.05365 -12.61667 -12.01589 -11.95203 -11.86688 -11.59037 -11.44956 -11.19347 -11.03031 -10.83260 -10.32644 -10.21159 -9.42513 -8.56385 -6.75408 -0.85140 -0.05759 0.79877 0.98496 1.25482 1.33051 1.41098 1.69344 1.81127 1.89404 2.12357 2.15930 2.62936 2.90560 3.02007 3.24277 3.31925 3.34136 3.43296 3.59077 3.68699 3.85874 4.01832 4.06360 4.33384 4.36887 4.49336 4.64804 4.77213 4.86554 4.93708 5.02389 5.13292 5.32507 5.56498 5.85755 5.92286 6.20252 6.43322 6.55633 6.67910 6.98281 7.10856 8.55565 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.016054 B = 0.003104 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.669020 B = 9017.267079 C = 9571.052198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.067 3.933 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.537 4.537 8 H 0.070 0.930 9 C 0.210 3.790 10 H 0.082 0.918 11 N -0.703 5.703 12 C 0.553 3.447 13 O -0.566 6.566 14 C -0.209 4.209 15 C 0.010 3.990 16 C -0.172 4.172 17 C 0.382 3.618 18 N -0.346 5.346 19 C 0.059 3.941 20 C -0.253 4.253 21 C 0.073 3.927 22 N -0.319 5.319 23 N -0.515 5.515 24 C 0.180 3.820 25 C 0.440 3.560 26 F -0.186 7.186 27 F -0.184 7.184 28 F -0.193 7.193 29 H 0.281 0.719 30 H 0.412 0.588 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.194 0.806 34 H 0.189 0.811 35 H 0.231 0.769 36 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.395 -3.001 17.082 20.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.738 3.262 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.106 3.894 10 H 0.099 0.901 11 N -0.355 5.355 12 C 0.340 3.660 13 O -0.446 6.446 14 C -0.215 4.215 15 C -0.016 4.016 16 C -0.194 4.194 17 C 0.154 3.846 18 N -0.124 5.124 19 C -0.080 4.080 20 C -0.281 4.281 21 C -0.116 4.116 22 N -0.137 5.137 23 N -0.228 5.228 24 C 0.021 3.979 25 C 0.384 3.616 26 F -0.168 7.168 27 F -0.166 7.166 28 F -0.174 7.174 29 H 0.091 0.909 30 H 0.251 0.749 31 H 0.181 0.819 32 H 0.183 0.817 33 H 0.211 0.789 34 H 0.206 0.794 35 H 0.248 0.752 36 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 11.837 -2.398 16.133 20.153 hybrid contribution -0.184 0.285 -0.211 0.399 sum 11.653 -2.113 15.922 19.844 Atomic orbital electron populations 1.69915 1.07581 1.29429 1.45877 1.25512 0.95227 1.01639 0.91676 0.86205 0.79666 0.80197 0.80141 1.18748 1.19603 1.18152 1.20656 0.87176 0.95505 1.54136 0.91157 1.19780 0.96476 0.92248 0.80944 0.90068 1.47021 1.17775 1.59184 1.11564 1.18538 0.81632 0.78222 0.87582 1.90742 1.52318 1.44199 1.57347 1.20939 0.98655 1.07496 0.94433 1.21752 0.94045 0.91218 0.94610 1.21624 1.02027 1.02904 0.92875 1.18149 0.90719 0.93016 0.82676 1.45900 1.14724 1.46151 1.05623 1.23449 0.98945 0.96744 0.88850 1.22142 0.95978 1.10063 0.99884 1.24958 0.98899 0.94450 0.93271 1.77462 1.02072 1.24561 1.09653 1.66957 1.16642 1.22350 1.16891 1.23046 0.98733 0.90471 0.85671 1.21564 0.75012 0.85269 0.79774 1.93082 1.90222 1.47682 1.85769 1.93106 1.88763 1.96213 1.38478 1.93153 1.31227 1.96537 1.96521 0.90934 0.74873 0.81921 0.81709 0.78904 0.79387 0.75236 0.79144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.97 13.96 21.44 0.30 -47.67 16 2 C 0.07 3.37 5.47 84.65 0.46 3.83 16 3 Si 0.91 40.02 26.99 68.60 1.85 41.87 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.26 -11.32 6.82 99.48 0.68 -10.65 16 7 C -0.54 -26.47 8.52 25.60 0.22 -26.25 16 8 H 0.07 3.78 8.00 -2.91 -0.02 3.76 16 9 C 0.21 9.24 1.71 44.25 0.08 9.31 16 10 H 0.08 3.79 4.73 -2.39 -0.01 3.78 16 11 N -0.70 -26.39 4.86 -449.12 -2.18 -28.58 16 12 C 0.55 20.26 7.42 86.74 0.64 20.91 16 13 O -0.57 -24.12 14.98 -3.96 -0.06 -24.17 16 14 C -0.21 -6.12 5.89 -19.98 -0.12 -6.24 16 15 C 0.01 0.26 9.70 22.71 0.22 0.48 16 16 C -0.17 -4.14 9.68 22.44 0.22 -3.93 16 17 C 0.38 9.81 7.55 132.89 1.00 10.81 16 18 N -0.35 -8.11 3.80 -192.19 -0.73 -8.84 16 19 C 0.06 1.09 11.09 83.37 0.92 2.02 16 20 C -0.25 -3.34 10.80 22.01 0.24 -3.10 16 21 C 0.07 1.03 12.02 85.28 1.02 2.05 16 22 N -0.32 -6.91 11.81 -56.96 -0.67 -7.58 16 23 N -0.52 -13.28 9.83 -191.83 -1.88 -15.16 16 24 C 0.18 4.63 10.71 85.04 0.91 5.54 16 25 C 0.44 18.80 2.83 71.98 0.20 19.01 16 26 F -0.19 -7.60 16.93 44.97 0.76 -6.84 16 27 F -0.18 -8.10 16.89 44.97 0.76 -7.34 16 28 F -0.19 -8.15 15.83 44.97 0.71 -7.44 16 29 H 0.28 14.04 8.31 -92.70 -0.77 13.27 16 30 H 0.41 13.38 6.65 -92.71 -0.62 12.76 16 31 H 0.16 3.98 7.73 -2.91 -0.02 3.96 16 32 H 0.17 3.50 7.67 -2.91 -0.02 3.47 16 33 H 0.19 2.98 8.05 -2.91 -0.02 2.95 16 34 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 35 H 0.23 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.19 4.09 6.41 -2.91 -0.02 4.07 16 Total: -1.00 -64.42 333.97 5.42 -59.00 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.54 Total: 18.29 kcal Atomic # 6 Polarization: 28.42 SS G_CDS: 6.02 Total: 34.45 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -5.17 Total: -107.82 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.06 Total: -24.17 kcal Atomic # 9 Polarization: -23.85 SS G_CDS: 2.23 Total: -21.61 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 1.85 Total: 41.87 kcal Total: -64.42 5.42 -59.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412311765.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.600 kcal (2) G-P(sol) polarization free energy of solvation -64.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds