Wall clock time and date at job start Sat Apr 11 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00466 * 2 1 4 4 H 1.48502 * 109.47147 * 95.34639 * 3 2 1 5 5 H 1.48496 * 109.47132 * 215.34936 * 3 2 1 6 6 H 1.48507 * 109.46840 * 335.34653 * 3 2 1 7 7 C 1.37875 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00380 * 354.96164 * 7 2 1 9 9 C 1.50700 * 119.99971 * 174.96198 * 7 2 1 10 10 H 1.09005 * 109.47452 * 34.68812 * 9 7 2 11 11 N 1.46502 * 109.47368 * 274.68760 * 9 7 2 12 12 C 1.34768 * 120.00013 * 155.00088 * 11 9 7 13 13 O 1.21517 * 120.00467 * 359.97438 * 12 11 9 14 14 C 1.48158 * 119.99975 * 180.02562 * 12 11 9 15 15 C 1.39962 * 120.86736 * 359.97438 * 14 12 11 16 16 C 1.38227 * 119.23582 * 180.02562 * 15 14 12 17 17 N 1.31663 * 121.05097 * 359.97438 * 16 15 14 18 18 C 1.32738 * 121.92192 * 0.02562 * 17 16 15 19 19 C 1.47906 * 119.68012 * 179.97438 * 18 17 16 20 20 N 1.31444 * 125.83654 * 179.69422 * 19 18 17 21 21 C 1.33663 * 109.25002 * 179.83665 * 20 19 18 22 22 C 1.34988 * 108.37582 * 0.43006 * 21 20 19 23 23 N 1.36446 * 125.83505 * 0.02562 * 19 18 17 24 24 H 0.97006 * 126.49158 * 359.96752 * 23 19 18 25 25 C 1.39468 * 120.63841 * 359.72302 * 18 17 16 26 26 C 1.53002 * 109.47257 * 154.68712 * 9 7 2 27 27 F 1.39898 * 109.47079 * 55.85189 * 26 9 7 28 28 F 1.39902 * 109.47553 * 175.85604 * 26 9 7 29 29 F 1.39901 * 109.47024 * 295.85648 * 26 9 7 30 30 H 0.97001 * 119.99727 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99842 * 334.99531 * 11 9 7 32 32 H 1.07998 * 120.38453 * 359.97438 * 15 14 12 33 33 H 1.07996 * 119.47600 * 179.97438 * 16 15 14 34 34 H 1.08000 * 125.81400 * 180.17847 * 21 20 19 35 35 H 1.07997 * 126.48343 * 179.78310 * 22 21 20 36 36 H 1.07999 * 120.55318 * 180.29859 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6098 1.9811 1.3940 5 1 3.4857 1.4753 -0.8100 6 1 1.3948 2.6826 -0.5840 7 6 2.0044 -1.1941 0.0005 8 1 1.4676 -2.1275 0.0831 9 6 3.5071 -1.1967 -0.1141 10 1 3.9125 -0.3272 0.4034 11 7 3.8892 -1.1458 -1.5275 12 6 5.0884 -0.6445 -1.8837 13 8 5.8526 -0.2342 -1.0326 14 6 5.4745 -0.5925 -3.3131 15 6 4.6084 -1.0596 -4.3084 16 6 5.0032 -0.9955 -5.6315 17 7 6.1773 -0.5029 -5.9667 18 6 7.0327 -0.0480 -5.0593 19 6 8.3391 0.4945 -5.4913 20 7 9.2704 0.9795 -4.7006 21 6 10.3132 1.3735 -5.4381 22 6 10.0290 1.1388 -6.7367 23 7 8.7809 0.5828 -6.7792 24 1 8.3005 0.3034 -7.5743 25 6 6.7093 -0.0719 -3.7028 26 6 4.0647 -2.4729 0.5193 27 9 3.4727 -3.5889 -0.0817 28 9 5.4500 -2.5210 0.3297 29 9 3.7812 -2.4759 1.8893 30 1 -0.4850 0.8401 -0.0004 31 1 3.2791 -1.4731 -2.2069 32 1 3.6429 -1.4661 -4.0456 33 1 4.3381 -1.3551 -6.4026 34 1 11.2261 1.8094 -5.0598 35 1 10.6671 1.3500 -7.5820 36 1 7.4042 0.3030 -2.9661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412646661.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:53 Heat of formation + Delta-G solvation = -96.648276 kcal Electronic energy + Delta-G solvation = -29062.827977 eV Core-core repulsion = 24325.920381 eV Total energy + Delta-G solvation = -4736.907595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.14085 -46.65338 -46.62862 -42.18792 -40.39679 -38.71316 -34.99692 -33.24240 -32.82440 -32.38512 -32.14022 -29.29820 -28.79245 -25.07206 -24.81619 -23.97976 -22.19040 -21.32284 -21.03258 -20.16998 -19.03718 -18.11782 -17.62892 -17.31371 -16.93523 -16.55454 -16.21437 -15.66314 -15.42508 -15.22232 -15.05662 -14.42768 -14.15131 -14.10190 -13.98976 -13.64185 -13.60968 -13.53201 -13.47065 -13.11132 -13.00852 -12.82891 -12.75769 -12.64017 -11.96020 -11.83453 -11.22039 -10.78585 -10.37553 -10.35822 -10.27365 -10.13946 -10.01005 -9.91308 -9.74717 -9.54824 -9.05205 -8.58532 -8.30446 -6.61207 -4.77270 0.43271 0.84129 1.91187 2.75700 2.78045 3.05381 3.15266 3.23670 3.26967 3.43035 3.56996 3.78377 3.95828 4.04206 4.53374 4.61507 4.72175 4.81071 4.87267 4.93560 5.04021 5.07866 5.12030 5.19798 5.27492 5.38173 5.62305 5.74827 5.82058 6.02509 6.23499 6.40117 6.43381 6.79152 6.95646 7.04870 7.54072 7.74596 7.80692 8.12046 8.44048 8.61067 8.93926 10.46627 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.003353 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.756469 B = 8349.842873 C = 8831.490758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.101 3.899 3 Si 0.867 3.133 4 H -0.265 1.265 5 H -0.254 1.254 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.096 0.904 9 C 0.204 3.796 10 H 0.091 0.909 11 N -0.703 5.703 12 C 0.542 3.458 13 O -0.526 6.526 14 C -0.076 4.076 15 C -0.132 4.132 16 C 0.103 3.897 17 N -0.476 5.476 18 C 0.185 3.815 19 C 0.250 3.750 20 N -0.462 5.462 21 C -0.024 4.024 22 C -0.044 4.044 23 N -0.547 5.547 24 H 0.427 0.573 25 C -0.072 4.072 26 C 0.442 3.558 27 F -0.189 7.189 28 F -0.194 7.194 29 F -0.183 7.183 30 H 0.276 0.724 31 H 0.400 0.600 32 H 0.149 0.851 33 H 0.169 0.831 34 H 0.176 0.824 35 H 0.182 0.818 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.876 0.072 -14.506 18.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.109 4.109 3 Si 0.691 3.309 4 H -0.190 1.190 5 H -0.177 1.177 6 H -0.205 1.205 7 C -0.577 4.577 8 H 0.114 0.886 9 C 0.101 3.899 10 H 0.108 0.892 11 N -0.356 5.356 12 C 0.327 3.673 13 O -0.403 6.403 14 C -0.087 4.087 15 C -0.153 4.153 16 C -0.055 4.055 17 N -0.188 5.188 18 C 0.048 3.952 19 C -0.010 4.010 20 N -0.182 5.182 21 C -0.175 4.175 22 C -0.180 4.180 23 N -0.149 5.149 24 H 0.266 0.734 25 C -0.094 4.094 26 C 0.386 3.614 27 F -0.170 7.170 28 F -0.176 7.176 29 F -0.164 7.164 30 H 0.087 0.913 31 H 0.238 0.762 32 H 0.167 0.833 33 H 0.186 0.814 34 H 0.193 0.807 35 H 0.199 0.801 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 12.436 0.543 -13.850 18.621 hybrid contribution -0.242 0.295 -0.715 0.810 sum 12.194 0.838 -14.564 19.013 Atomic orbital electron populations 1.69856 1.06422 1.28526 1.44024 1.24970 0.94795 0.99298 0.91882 0.86953 0.80861 0.82729 0.80308 1.18972 1.17749 1.20515 1.20766 0.86153 0.96587 1.54203 0.88558 1.20074 0.98230 0.90708 0.80860 0.89165 1.47555 1.16262 1.61451 1.10294 1.18412 0.82798 0.78922 0.87149 1.90764 1.51172 1.47167 1.51208 1.20656 0.94735 0.98342 0.94957 1.22584 1.00685 0.98388 0.93687 1.22571 0.92062 0.95773 0.95088 1.67287 1.03778 1.09728 1.37970 1.18100 0.89929 0.97708 0.89428 1.20657 0.94860 1.05253 0.80272 1.70359 1.00790 1.14299 1.32773 1.22419 0.99206 1.06262 0.89599 1.22941 0.88160 1.06067 1.00828 1.43350 1.15000 1.46980 1.09597 0.73403 1.22150 0.96083 0.95219 0.95961 1.21486 0.74859 0.88073 0.76975 1.93083 1.83933 1.56521 1.83508 1.93150 1.32466 1.96987 1.94978 1.93110 1.93410 1.96871 1.33026 0.91335 0.76248 0.83314 0.81434 0.80698 0.80100 0.82175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.75 13.96 55.43 0.77 -21.98 16 2 C 0.10 2.55 5.47 -17.82 -0.10 2.45 16 3 Si 0.87 19.63 26.92 -169.99 -4.58 15.05 16 4 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.25 -5.79 6.83 56.52 0.39 -5.40 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -13.27 8.68 -34.44 -0.30 -13.57 16 8 H 0.10 2.56 7.69 -52.49 -0.40 2.16 16 9 C 0.20 4.56 1.45 -69.08 -0.10 4.46 16 10 H 0.09 2.14 5.33 -51.93 -0.28 1.87 16 11 N -0.70 -13.71 4.89 -55.78 -0.27 -13.99 16 12 C 0.54 10.61 7.09 -12.19 -0.09 10.52 16 13 O -0.53 -11.94 15.04 5.35 0.08 -11.85 16 14 C -0.08 -1.21 5.90 -104.69 -0.62 -1.83 16 15 C -0.13 -1.65 9.61 -38.94 -0.37 -2.02 16 16 C 0.10 1.12 11.16 -17.63 -0.20 0.92 16 17 N -0.48 -5.92 10.26 -9.89 -0.10 -6.02 16 18 C 0.19 2.62 6.75 -83.06 -0.56 2.06 16 19 C 0.25 3.36 7.87 -154.65 -1.22 2.14 16 20 N -0.46 -6.64 10.85 -11.20 -0.12 -6.76 16 21 C -0.02 -0.26 11.84 -17.91 -0.21 -0.47 16 22 C -0.04 -0.36 12.03 -16.53 -0.20 -0.56 16 23 N -0.55 -5.34 6.18 -10.55 -0.07 -5.40 16 24 H 0.43 3.15 8.96 -40.82 -0.37 2.78 16 25 C -0.07 -1.14 9.29 -38.63 -0.36 -1.50 16 26 C 0.44 9.59 2.83 37.16 0.11 9.70 16 27 F -0.19 -3.96 16.65 2.25 0.04 -3.92 16 28 F -0.19 -4.21 15.57 2.25 0.04 -4.18 16 29 F -0.18 -4.03 17.12 2.25 0.04 -3.99 16 30 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.40 6.79 6.73 -40.82 -0.27 6.51 16 32 H 0.15 1.54 6.52 -52.49 -0.34 1.20 16 33 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.18 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.16 2.74 7.51 -52.49 -0.39 2.34 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -31.32 333.67 -5.83 -37.16 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -2.48 Total: 8.54 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: -4.21 Total: 12.32 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.21 Total: -54.15 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.08 Total: -11.85 kcal Atomic # 9 Polarization: -12.20 SS G_CDS: 0.11 Total: -12.09 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.58 Total: 15.05 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.32 -5.83 -37.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412646661.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.492 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds