Wall clock time and date at job start Sat Apr 11 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00466 * 2 1 4 4 H 1.48502 * 109.47147 * 95.34639 * 3 2 1 5 5 H 1.48496 * 109.47132 * 215.34936 * 3 2 1 6 6 H 1.48507 * 109.46840 * 335.34653 * 3 2 1 7 7 C 1.37875 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00380 * 354.96164 * 7 2 1 9 9 C 1.50700 * 119.99971 * 174.96198 * 7 2 1 10 10 H 1.09005 * 109.47452 * 34.68812 * 9 7 2 11 11 N 1.46502 * 109.47368 * 274.68760 * 9 7 2 12 12 C 1.34768 * 120.00013 * 155.00088 * 11 9 7 13 13 O 1.21517 * 120.00467 * 359.97438 * 12 11 9 14 14 C 1.48158 * 119.99975 * 180.02562 * 12 11 9 15 15 C 1.39962 * 120.86736 * 359.97438 * 14 12 11 16 16 C 1.38227 * 119.23582 * 180.02562 * 15 14 12 17 17 N 1.31663 * 121.05097 * 359.97438 * 16 15 14 18 18 C 1.32738 * 121.92192 * 0.02562 * 17 16 15 19 19 C 1.47906 * 119.68012 * 179.97438 * 18 17 16 20 20 N 1.31444 * 125.83654 * 179.69422 * 19 18 17 21 21 C 1.33663 * 109.25002 * 179.83665 * 20 19 18 22 22 C 1.34988 * 108.37582 * 0.43006 * 21 20 19 23 23 N 1.36446 * 125.83505 * 0.02562 * 19 18 17 24 24 H 0.97006 * 126.49158 * 359.96752 * 23 19 18 25 25 C 1.39468 * 120.63841 * 359.72302 * 18 17 16 26 26 C 1.53002 * 109.47257 * 154.68712 * 9 7 2 27 27 F 1.39898 * 109.47079 * 55.85189 * 26 9 7 28 28 F 1.39902 * 109.47553 * 175.85604 * 26 9 7 29 29 F 1.39901 * 109.47024 * 295.85648 * 26 9 7 30 30 H 0.97001 * 119.99727 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99842 * 334.99531 * 11 9 7 32 32 H 1.07998 * 120.38453 * 359.97438 * 15 14 12 33 33 H 1.07996 * 119.47600 * 179.97438 * 16 15 14 34 34 H 1.08000 * 125.81400 * 180.17847 * 21 20 19 35 35 H 1.07997 * 126.48343 * 179.78310 * 22 21 20 36 36 H 1.07999 * 120.55318 * 180.29859 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6098 1.9811 1.3940 5 1 3.4857 1.4753 -0.8100 6 1 1.3948 2.6826 -0.5840 7 6 2.0044 -1.1941 0.0005 8 1 1.4676 -2.1275 0.0831 9 6 3.5071 -1.1967 -0.1141 10 1 3.9125 -0.3272 0.4034 11 7 3.8892 -1.1458 -1.5275 12 6 5.0884 -0.6445 -1.8837 13 8 5.8526 -0.2342 -1.0326 14 6 5.4745 -0.5925 -3.3131 15 6 4.6084 -1.0596 -4.3084 16 6 5.0032 -0.9955 -5.6315 17 7 6.1773 -0.5029 -5.9667 18 6 7.0327 -0.0480 -5.0593 19 6 8.3391 0.4945 -5.4913 20 7 9.2704 0.9795 -4.7006 21 6 10.3132 1.3735 -5.4381 22 6 10.0290 1.1388 -6.7367 23 7 8.7809 0.5828 -6.7792 24 1 8.3005 0.3034 -7.5743 25 6 6.7093 -0.0719 -3.7028 26 6 4.0647 -2.4729 0.5193 27 9 3.4727 -3.5889 -0.0817 28 9 5.4500 -2.5210 0.3297 29 9 3.7812 -2.4759 1.8893 30 1 -0.4850 0.8401 -0.0004 31 1 3.2791 -1.4731 -2.2069 32 1 3.6429 -1.4661 -4.0456 33 1 4.3381 -1.3551 -6.4026 34 1 11.2261 1.8094 -5.0598 35 1 10.6671 1.3500 -7.5820 36 1 7.4042 0.3030 -2.9661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412646661.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:52 Heat of formation + Delta-G solvation = -118.857385 kcal Electronic energy + Delta-G solvation = -29063.791036 eV Core-core repulsion = 24325.920381 eV Total energy + Delta-G solvation = -4737.870655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.92176 -48.43574 -48.40154 -43.01077 -41.59156 -40.13404 -36.75863 -34.72785 -34.05987 -33.56816 -33.11591 -30.96307 -29.68598 -26.95853 -26.01406 -25.03162 -23.41117 -22.69568 -21.99752 -21.45732 -20.43192 -19.53757 -19.38904 -18.75284 -18.52550 -18.31640 -17.51806 -16.80233 -16.57731 -16.42877 -16.34228 -15.90465 -15.63559 -15.29464 -15.24983 -14.98863 -14.90006 -14.84127 -14.78261 -14.69867 -14.60401 -14.53253 -14.48021 -14.27513 -13.71569 -13.07435 -12.97266 -12.61591 -12.08068 -11.87560 -11.55135 -11.25963 -11.20040 -11.11875 -11.02721 -10.78684 -10.71467 -10.27069 -9.13462 -8.57529 -6.76148 -0.62088 -0.25748 1.09060 1.23332 1.32222 1.41496 1.65140 1.78163 2.00447 2.07997 2.14311 2.17635 2.71326 2.79355 2.90336 3.15189 3.29436 3.36788 3.60251 3.69658 3.78700 3.83523 4.09083 4.22131 4.36537 4.41718 4.55477 4.65608 4.72956 4.88915 4.95211 5.04733 5.27299 5.41889 5.67944 5.84628 6.35665 6.42427 6.51740 6.58220 6.97249 6.98350 7.06916 8.54238 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.003353 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.756469 B = 8349.842873 C = 8831.490758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.071 3.929 3 Si 0.914 3.086 4 H -0.268 1.268 5 H -0.260 1.260 6 H -0.270 1.270 7 C -0.538 4.538 8 H 0.073 0.927 9 C 0.211 3.789 10 H 0.077 0.923 11 N -0.698 5.698 12 C 0.542 3.458 13 O -0.564 6.564 14 C -0.094 4.094 15 C -0.126 4.126 16 C 0.119 3.881 17 N -0.470 5.470 18 C 0.187 3.813 19 C 0.213 3.787 20 N -0.502 5.502 21 C -0.056 4.056 22 C -0.009 4.009 23 N -0.535 5.535 24 H 0.439 0.561 25 C -0.093 4.093 26 C 0.444 3.556 27 F -0.183 7.183 28 F -0.193 7.193 29 F -0.185 7.185 30 H 0.281 0.719 31 H 0.414 0.586 32 H 0.172 0.828 33 H 0.217 0.783 34 H 0.195 0.805 35 H 0.231 0.769 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.628 0.194 -17.739 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.193 1.193 5 H -0.184 1.184 6 H -0.195 1.195 7 C -0.576 4.576 8 H 0.091 0.909 9 C 0.106 3.894 10 H 0.095 0.905 11 N -0.351 5.351 12 C 0.330 3.670 13 O -0.444 6.444 14 C -0.105 4.105 15 C -0.146 4.146 16 C -0.040 4.040 17 N -0.181 5.181 18 C 0.050 3.950 19 C -0.047 4.047 20 N -0.224 5.224 21 C -0.206 4.206 22 C -0.146 4.146 23 N -0.138 5.138 24 H 0.280 0.720 25 C -0.115 4.115 26 C 0.388 3.612 27 F -0.164 7.164 28 F -0.175 7.175 29 F -0.167 7.167 30 H 0.091 0.909 31 H 0.254 0.746 32 H 0.189 0.811 33 H 0.233 0.767 34 H 0.212 0.788 35 H 0.248 0.752 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 13.169 0.650 -17.115 21.605 hybrid contribution -0.353 0.214 0.191 0.455 sum 12.816 0.864 -16.925 21.247 Atomic orbital electron populations 1.69908 1.07459 1.29424 1.45752 1.25411 0.95139 1.01356 0.91703 0.86224 0.79666 0.80403 0.79913 1.19322 1.18368 1.19494 1.20670 0.87007 0.95624 1.54253 0.90909 1.19782 0.96851 0.90578 0.82151 0.90532 1.47077 1.16900 1.61756 1.09383 1.18852 0.81938 0.77597 0.88646 1.90737 1.52160 1.48666 1.52800 1.20340 0.95918 1.00929 0.93282 1.22860 1.00794 0.97381 0.93605 1.23362 0.91708 0.93511 0.95387 1.67435 1.04082 1.09491 1.37113 1.18167 0.90711 0.97324 0.88758 1.20510 0.94981 1.07518 0.81695 1.70275 1.02225 1.15082 1.34789 1.22960 0.99450 1.07478 0.90721 1.23702 0.87218 1.02338 1.01334 1.43367 1.15412 1.46191 1.08859 0.71977 1.21964 0.96016 0.96901 0.96651 1.21377 0.74891 0.88085 0.76858 1.93092 1.83834 1.56131 1.83378 1.93155 1.32369 1.96984 1.94964 1.93104 1.93431 1.96891 1.33244 0.90874 0.74624 0.81087 0.76689 0.78794 0.75237 0.84723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.51 13.96 21.45 0.30 -47.21 16 2 C 0.07 3.60 5.47 84.65 0.46 4.07 16 3 Si 0.91 40.63 26.92 68.60 1.85 42.48 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.26 -11.71 6.83 99.48 0.68 -11.03 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.54 -26.63 8.68 25.60 0.22 -26.41 16 8 H 0.07 3.93 7.69 -2.91 -0.02 3.91 16 9 C 0.21 9.46 1.45 44.25 0.06 9.53 16 10 H 0.08 3.69 5.33 -2.38 -0.01 3.67 16 11 N -0.70 -27.04 4.89 -448.67 -2.19 -29.24 16 12 C 0.54 21.43 7.09 86.88 0.62 22.05 16 13 O -0.56 -26.41 15.04 -3.77 -0.06 -26.46 16 14 C -0.09 -2.98 5.90 -19.91 -0.12 -3.10 16 15 C -0.13 -2.83 9.61 22.69 0.22 -2.61 16 16 C 0.12 2.15 11.16 84.72 0.95 3.09 16 17 N -0.47 -10.51 10.26 -185.19 -1.90 -12.41 16 18 C 0.19 5.18 6.75 41.87 0.28 5.46 16 19 C 0.21 5.57 7.87 136.55 1.07 6.65 16 20 N -0.50 -14.55 10.85 -189.36 -2.05 -16.61 16 21 C -0.06 -1.12 11.84 83.67 0.99 -0.13 16 22 C -0.01 -0.11 12.03 83.19 1.00 0.89 16 23 N -0.53 -9.13 6.18 -187.29 -1.16 -10.29 16 24 H 0.44 5.11 8.96 -92.70 -0.83 4.28 16 25 C -0.09 -3.02 9.29 22.88 0.21 -2.81 16 26 C 0.44 19.32 2.83 71.98 0.20 19.53 16 27 F -0.18 -7.60 16.65 44.97 0.75 -6.85 16 28 F -0.19 -8.43 15.57 44.97 0.70 -7.73 16 29 F -0.19 -8.20 17.12 44.97 0.77 -7.43 16 30 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 31 H 0.41 13.62 6.73 -92.71 -0.62 13.00 16 32 H 0.17 3.01 6.52 -2.91 -0.02 2.99 16 33 H 0.22 1.84 8.06 -2.91 -0.02 1.81 16 34 H 0.20 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.23 0.61 8.06 -2.91 -0.02 0.59 16 36 H 0.13 4.99 7.51 -2.91 -0.02 4.97 16 Total: -1.00 -70.42 333.67 2.90 -67.52 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -0.28 Total: 18.03 kcal Atomic # 6 Polarization: 30.03 SS G_CDS: 6.18 Total: 36.21 kcal Atomic # 7 Polarization: -108.75 SS G_CDS: -7.01 Total: -115.76 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.06 Total: -26.46 kcal Atomic # 9 Polarization: -24.23 SS G_CDS: 2.22 Total: -22.01 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 1.85 Total: 42.48 kcal Total: -70.42 2.90 -67.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412646661.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.340 kcal (2) G-P(sol) polarization free energy of solvation -70.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds