Wall clock time and date at job start Sat Apr 11 2020 05:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99441 * 2 1 4 4 H 1.48503 * 109.46933 * 239.99475 * 3 2 1 5 5 H 1.48498 * 109.47788 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47344 * 119.99939 * 3 2 1 7 7 C 1.37871 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00071 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99804 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.47600 * 59.99856 * 9 7 2 11 11 N 1.46508 * 109.47017 * 179.97438 * 9 7 2 12 12 C 1.34782 * 119.99908 * 204.99894 * 11 9 7 13 13 O 1.21513 * 119.99600 * 359.97438 * 12 11 9 14 14 C 1.48148 * 119.99697 * 180.02562 * 12 11 9 15 15 C 1.39966 * 120.87389 * 359.97438 * 14 12 11 16 16 C 1.38225 * 119.23574 * 179.97438 * 15 14 12 17 17 N 1.31662 * 121.05411 * 0.02562 * 16 15 14 18 18 C 1.32740 * 121.92189 * 359.97438 * 17 16 15 19 19 C 1.47898 * 119.68199 * 180.02562 * 18 17 16 20 20 N 1.31444 * 125.83614 * 179.69223 * 19 18 17 21 21 C 1.33664 * 109.24732 * 179.88875 * 20 19 18 22 22 C 1.34984 * 108.37881 * 0.37591 * 21 20 19 23 23 N 1.36451 * 125.83385 * 359.97438 * 19 18 17 24 24 H 0.97003 * 126.49165 * 359.95243 * 23 19 18 25 25 C 1.39472 * 120.63524 * 359.97438 * 18 17 16 26 26 C 1.53008 * 109.47156 * 299.99494 * 9 7 2 27 27 F 1.39901 * 109.46666 * 300.00411 * 26 9 7 28 28 F 1.39897 * 109.46803 * 60.00196 * 26 9 7 29 29 F 1.39895 * 109.47027 * 180.02562 * 26 9 7 30 30 H 0.96993 * 120.00497 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99783 * 25.00064 * 11 9 7 32 32 H 1.08000 * 120.37977 * 0.25195 * 15 14 12 33 33 H 1.07999 * 119.47012 * 180.02562 * 16 15 14 34 34 H 1.08001 * 125.81099 * 180.14487 * 21 20 19 35 35 H 1.08004 * 126.48827 * 179.77279 * 22 21 20 36 36 H 1.07999 * 120.55179 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 7 2.2032 -3.6126 0.0005 12 6 1.8371 -4.8123 -0.4927 13 8 0.7172 -4.9704 -0.9370 14 6 2.7997 -5.9384 -0.4922 15 6 4.0940 -5.7767 0.0155 16 6 4.9643 -6.8504 -0.0002 17 7 4.5944 -8.0176 -0.4844 18 6 3.3784 -8.2197 -0.9766 19 6 3.0152 -9.5515 -1.5076 20 7 1.8499 -9.8859 -2.0154 21 6 1.8858 -11.1671 -2.3946 22 6 3.1095 -11.6609 -2.1104 23 7 3.8310 -10.6445 -1.5490 24 1 4.7489 -10.6914 -1.2389 25 6 2.4394 -7.1886 -0.9969 26 6 0.3711 -2.5799 1.2496 27 9 1.1751 -2.5055 2.3920 28 9 -0.5381 -1.5166 1.2490 29 9 -0.3279 -3.7917 1.2498 30 1 -0.4850 0.8399 -0.0004 31 1 3.0971 -3.4864 0.3556 32 1 4.4075 -4.8253 0.4190 33 1 5.9638 -6.7300 0.3910 34 1 1.0728 -11.7151 -2.8476 35 1 3.4537 -12.6684 -2.2923 36 1 1.4502 -7.3547 -1.3974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412646670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:55 Heat of formation + Delta-G solvation = -73.034690 kcal Electronic energy + Delta-G solvation = -28972.104816 eV Core-core repulsion = 24236.221183 eV Total energy + Delta-G solvation = -4735.883634 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.40673 -46.06089 -45.66824 -42.18388 -40.40117 -38.66377 -34.86210 -33.26526 -32.83230 -32.32794 -32.14636 -28.93312 -28.49915 -24.91202 -24.57127 -23.95980 -22.23251 -21.37394 -21.02082 -20.10462 -18.99357 -17.71182 -17.02205 -16.90533 -16.68893 -16.35928 -15.81242 -15.54948 -15.41735 -15.18270 -14.91857 -14.45424 -14.18482 -14.09655 -14.01021 -13.62447 -13.51560 -13.16071 -12.97875 -12.56416 -12.45343 -12.34639 -12.10193 -11.92639 -11.83394 -11.24366 -10.92762 -10.90220 -10.49310 -10.36904 -10.34591 -10.10132 -10.01607 -9.76790 -9.75261 -9.45974 -8.79297 -8.41817 -8.30546 -6.29566 -4.54902 0.41904 0.83413 1.91174 2.76065 2.78907 3.16009 3.20960 3.22666 3.28368 3.51188 3.56374 3.89385 4.15243 4.49138 4.51524 4.68761 4.74264 4.86985 4.88812 4.92522 5.04701 5.17990 5.30439 5.60766 5.69385 5.78534 5.80160 5.82510 6.00948 6.13968 6.38803 6.44094 6.82322 6.99115 7.05213 7.36389 7.52977 7.55859 7.81112 8.11751 8.40304 8.65257 9.13189 10.61972 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.021509 B = 0.002804 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.455496 B = 9983.445138 C =10526.484798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.066 3.934 3 Si 0.916 3.084 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.245 3.755 10 H 0.089 0.911 11 N -0.701 5.701 12 C 0.546 3.454 13 O -0.516 6.516 14 C -0.072 4.072 15 C -0.134 4.134 16 C 0.103 3.897 17 N -0.476 5.476 18 C 0.187 3.813 19 C 0.249 3.751 20 N -0.461 5.461 21 C -0.024 4.024 22 C -0.043 4.043 23 N -0.547 5.547 24 H 0.427 0.573 25 C -0.070 4.070 26 C 0.417 3.583 27 F -0.209 7.209 28 F -0.135 7.135 29 F -0.217 7.217 30 H 0.270 0.730 31 H 0.399 0.601 32 H 0.147 0.853 33 H 0.168 0.832 34 H 0.176 0.824 35 H 0.182 0.818 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.626 -16.168 -1.048 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.143 4.143 3 Si 0.743 3.257 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.592 4.592 8 H 0.096 0.904 9 C 0.140 3.860 10 H 0.106 0.894 11 N -0.351 5.351 12 C 0.331 3.669 13 O -0.392 6.392 14 C -0.083 4.083 15 C -0.155 4.155 16 C -0.055 4.055 17 N -0.188 5.188 18 C 0.050 3.950 19 C -0.011 4.011 20 N -0.181 5.181 21 C -0.174 4.174 22 C -0.180 4.180 23 N -0.150 5.150 24 H 0.266 0.734 25 C -0.093 4.093 26 C 0.361 3.639 27 F -0.191 7.191 28 F -0.116 7.116 29 F -0.199 7.199 30 H 0.081 0.919 31 H 0.234 0.766 32 H 0.165 0.835 33 H 0.185 0.815 34 H 0.193 0.807 35 H 0.199 0.801 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 9.458 -16.298 -1.438 18.898 hybrid contribution 1.250 0.916 0.748 1.721 sum 10.707 -15.382 -0.690 18.754 Atomic orbital electron populations 1.70380 1.05881 1.27663 1.43149 1.25078 0.95171 1.00158 0.93931 0.86251 0.79341 0.81215 0.78934 1.19737 1.20817 1.19777 1.20810 0.93758 0.87975 1.56681 0.90391 1.19810 0.88654 0.85515 0.92034 0.89380 1.45995 1.17376 1.10279 1.61403 1.18121 0.86950 0.82650 0.79226 1.90811 1.20231 1.82661 1.45484 1.20560 0.94551 0.94898 0.98312 1.22545 0.93285 1.01249 0.98406 1.22555 0.99940 0.87002 0.96019 1.67286 1.16675 1.25313 1.09511 1.18097 0.89970 0.89470 0.97479 1.20651 0.87374 0.87823 1.05268 1.70366 1.19141 1.14376 1.14233 1.22424 0.97378 0.91515 1.06126 1.22944 0.94425 0.94879 1.05736 1.43350 1.15241 1.09661 1.46708 0.73424 1.22156 1.01402 0.90360 0.95360 1.23102 0.80919 0.72904 0.87024 1.92991 1.74410 1.96186 1.55481 1.93411 1.68324 1.53709 1.96179 1.93078 1.81498 1.48332 1.96963 0.91917 0.76607 0.83518 0.81500 0.80673 0.80098 0.82054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.50 9.50 55.43 0.53 -21.98 16 2 C 0.07 1.67 5.20 -17.82 -0.09 1.58 16 3 Si 0.92 19.54 29.54 -169.99 -5.02 14.52 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.56 -13.66 8.46 -34.44 -0.29 -13.96 16 8 H 0.08 1.78 7.74 -52.49 -0.41 1.37 16 9 C 0.25 5.91 2.21 -69.07 -0.15 5.75 16 10 H 0.09 2.38 7.58 -51.93 -0.39 1.98 16 11 N -0.70 -13.74 4.95 -55.77 -0.28 -14.02 16 12 C 0.55 10.68 7.33 -12.19 -0.09 10.59 16 13 O -0.52 -12.03 15.01 5.35 0.08 -11.95 16 14 C -0.07 -1.12 5.90 -104.69 -0.62 -1.73 16 15 C -0.13 -1.57 9.61 -38.94 -0.37 -1.94 16 16 C 0.10 1.05 11.16 -17.63 -0.20 0.86 16 17 N -0.48 -5.70 10.26 -9.89 -0.10 -5.80 16 18 C 0.19 2.57 6.75 -83.06 -0.56 2.01 16 19 C 0.25 3.29 7.86 -154.65 -1.22 2.07 16 20 N -0.46 -6.56 10.85 -11.21 -0.12 -6.68 16 21 C -0.02 -0.25 11.84 -17.91 -0.21 -0.46 16 22 C -0.04 -0.35 12.03 -16.54 -0.20 -0.55 16 23 N -0.55 -5.22 6.18 -10.55 -0.07 -5.28 16 24 H 0.43 3.04 8.96 -40.82 -0.37 2.67 16 25 C -0.07 -1.09 9.29 -38.63 -0.36 -1.45 16 26 C 0.42 10.49 2.81 37.16 0.10 10.59 16 27 F -0.21 -5.02 16.94 2.25 0.04 -4.98 16 28 F -0.14 -3.68 12.91 2.25 0.03 -3.65 16 29 F -0.22 -5.46 15.67 2.25 0.04 -5.43 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.40 6.49 6.67 -40.82 -0.27 6.22 16 32 H 0.15 1.38 6.53 -52.49 -0.34 1.03 16 33 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.18 0.71 8.06 -52.48 -0.42 0.28 16 36 H 0.16 2.72 7.51 -52.49 -0.39 2.32 16 LS Contribution 331.07 15.07 4.99 4.99 Total: -1.00 -32.42 331.07 -6.72 -39.15 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -2.58 Total: 7.76 kcal Atomic # 6 Polarization: 17.62 SS G_CDS: -4.26 Total: 13.36 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.04 Total: -53.76 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.95 kcal Atomic # 9 Polarization: -14.17 SS G_CDS: 0.10 Total: -14.06 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.42 -6.72 -39.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412646670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.889 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds