Wall clock time and date at job start Sat Apr 11 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99441 * 2 1 4 4 H 1.48503 * 109.46933 * 239.99475 * 3 2 1 5 5 H 1.48498 * 109.47788 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47344 * 119.99939 * 3 2 1 7 7 C 1.37871 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00071 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99804 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.47600 * 59.99856 * 9 7 2 11 11 N 1.46508 * 109.47017 * 179.97438 * 9 7 2 12 12 C 1.34782 * 119.99908 * 204.99894 * 11 9 7 13 13 O 1.21513 * 119.99600 * 359.97438 * 12 11 9 14 14 C 1.48148 * 119.99697 * 180.02562 * 12 11 9 15 15 C 1.39966 * 120.87389 * 359.97438 * 14 12 11 16 16 C 1.38225 * 119.23574 * 179.97438 * 15 14 12 17 17 N 1.31662 * 121.05411 * 0.02562 * 16 15 14 18 18 C 1.32740 * 121.92189 * 359.97438 * 17 16 15 19 19 C 1.47898 * 119.68199 * 180.02562 * 18 17 16 20 20 N 1.31444 * 125.83614 * 179.69223 * 19 18 17 21 21 C 1.33664 * 109.24732 * 179.88875 * 20 19 18 22 22 C 1.34984 * 108.37881 * 0.37591 * 21 20 19 23 23 N 1.36451 * 125.83385 * 359.97438 * 19 18 17 24 24 H 0.97003 * 126.49165 * 359.95243 * 23 19 18 25 25 C 1.39472 * 120.63524 * 359.97438 * 18 17 16 26 26 C 1.53008 * 109.47156 * 299.99494 * 9 7 2 27 27 F 1.39901 * 109.46666 * 300.00411 * 26 9 7 28 28 F 1.39897 * 109.46803 * 60.00196 * 26 9 7 29 29 F 1.39895 * 109.47027 * 180.02562 * 26 9 7 30 30 H 0.96993 * 120.00497 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99783 * 25.00064 * 11 9 7 32 32 H 1.08000 * 120.37977 * 0.25195 * 15 14 12 33 33 H 1.07999 * 119.47012 * 180.02562 * 16 15 14 34 34 H 1.08001 * 125.81099 * 180.14487 * 21 20 19 35 35 H 1.08004 * 126.48827 * 179.77279 * 22 21 20 36 36 H 1.07999 * 120.55179 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 7 2.2032 -3.6126 0.0005 12 6 1.8371 -4.8123 -0.4927 13 8 0.7172 -4.9704 -0.9370 14 6 2.7997 -5.9384 -0.4922 15 6 4.0940 -5.7767 0.0155 16 6 4.9643 -6.8504 -0.0002 17 7 4.5944 -8.0176 -0.4844 18 6 3.3784 -8.2197 -0.9766 19 6 3.0152 -9.5515 -1.5076 20 7 1.8499 -9.8859 -2.0154 21 6 1.8858 -11.1671 -2.3946 22 6 3.1095 -11.6609 -2.1104 23 7 3.8310 -10.6445 -1.5490 24 1 4.7489 -10.6914 -1.2389 25 6 2.4394 -7.1886 -0.9969 26 6 0.3711 -2.5799 1.2496 27 9 1.1751 -2.5055 2.3920 28 9 -0.5381 -1.5166 1.2490 29 9 -0.3279 -3.7917 1.2498 30 1 -0.4850 0.8399 -0.0004 31 1 3.0971 -3.4864 0.3556 32 1 4.4075 -4.8253 0.4190 33 1 5.9638 -6.7300 0.3910 34 1 1.0728 -11.7151 -2.8476 35 1 3.4537 -12.6684 -2.2923 36 1 1.4502 -7.3547 -1.3974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412646670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:54 Heat of formation + Delta-G solvation = -95.965250 kcal Electronic energy + Delta-G solvation = -28973.099160 eV Core-core repulsion = 24236.221183 eV Total energy + Delta-G solvation = -4736.877977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.45050 -48.08666 -47.75553 -42.99891 -41.57255 -40.09237 -36.65298 -34.75510 -33.97888 -33.51710 -33.10222 -30.40255 -29.66248 -26.66944 -25.97826 -25.02388 -23.55150 -22.70299 -21.98528 -21.45304 -20.20238 -19.10534 -18.92527 -18.69916 -18.48339 -17.87720 -17.16088 -16.75301 -16.66605 -16.42293 -16.32644 -15.90121 -15.54465 -15.01644 -14.97853 -14.95667 -14.79776 -14.66589 -14.52104 -14.46888 -14.34015 -14.28028 -14.06063 -13.91006 -13.09917 -12.94312 -12.80404 -12.60697 -12.24417 -11.63684 -11.45812 -11.24729 -11.17862 -11.10710 -10.76826 -10.69922 -10.68715 -10.19468 -9.12140 -8.21934 -6.53956 -0.60491 -0.23928 1.10648 1.48362 1.50568 1.59086 1.71306 1.86140 2.09717 2.12794 2.38139 2.49570 2.73247 2.81970 2.93659 3.40904 3.64766 3.75275 3.79829 3.81529 3.84726 4.09977 4.14427 4.25702 4.42537 4.54994 4.67460 4.70864 4.86341 4.97278 5.05657 5.25258 5.42609 5.50425 5.62354 5.69034 6.37329 6.48643 6.54735 6.60105 6.99905 7.08127 7.21149 8.70736 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.021509 B = 0.002804 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.455496 B = 9983.445138 C =10526.484798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.015 3.985 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.562 4.562 8 H 0.099 0.901 9 C 0.252 3.748 10 H 0.049 0.951 11 N -0.691 5.691 12 C 0.545 3.455 13 O -0.565 6.565 14 C -0.089 4.089 15 C -0.122 4.122 16 C 0.119 3.881 17 N -0.470 5.470 18 C 0.187 3.813 19 C 0.213 3.787 20 N -0.504 5.504 21 C -0.057 4.057 22 C -0.008 4.008 23 N -0.535 5.535 24 H 0.439 0.561 25 C -0.093 4.093 26 C 0.413 3.587 27 F -0.201 7.201 28 F -0.149 7.149 29 F -0.221 7.221 30 H 0.269 0.731 31 H 0.417 0.583 32 H 0.175 0.825 33 H 0.219 0.781 34 H 0.194 0.806 35 H 0.232 0.768 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.639 -17.272 -0.441 22.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.191 4.191 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.599 4.599 8 H 0.117 0.883 9 C 0.145 3.855 10 H 0.067 0.933 11 N -0.342 5.342 12 C 0.332 3.668 13 O -0.444 6.444 14 C -0.100 4.100 15 C -0.143 4.143 16 C -0.039 4.039 17 N -0.181 5.181 18 C 0.051 3.949 19 C -0.047 4.047 20 N -0.225 5.225 21 C -0.207 4.207 22 C -0.146 4.146 23 N -0.138 5.138 24 H 0.281 0.719 25 C -0.116 4.116 26 C 0.357 3.643 27 F -0.182 7.182 28 F -0.130 7.130 29 F -0.203 7.203 30 H 0.079 0.921 31 H 0.255 0.745 32 H 0.193 0.807 33 H 0.235 0.765 34 H 0.211 0.789 35 H 0.248 0.752 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.530 -17.423 -0.816 22.074 hybrid contribution 0.016 1.091 0.543 1.219 sum 13.546 -16.332 -0.272 21.220 Atomic orbital electron populations 1.70524 1.07615 1.28350 1.44416 1.26026 0.95875 1.03813 0.93362 0.85185 0.77965 0.76544 0.79502 1.18601 1.21288 1.18732 1.21205 0.94762 0.87930 1.55995 0.88325 1.19411 0.88892 0.87249 0.89977 0.93300 1.45767 1.17475 1.09389 1.61584 1.18755 0.87063 0.83293 0.77725 1.90778 1.22687 1.83485 1.47467 1.20202 0.95496 0.93184 1.01078 1.22858 0.91370 1.03093 0.96983 1.23398 1.01297 0.85495 0.93704 1.67435 1.15356 1.26099 1.09203 1.18132 0.90067 0.89415 0.97266 1.20525 0.88101 0.88658 1.07401 1.70283 1.20539 1.16590 1.15120 1.22956 0.99501 0.90775 1.07449 1.23697 0.92951 0.95895 1.02010 1.43359 1.15579 1.08926 1.45947 0.71943 1.21950 1.01026 0.91470 0.97140 1.23305 0.80910 0.72379 0.87751 1.92990 1.74044 1.96135 1.55069 1.93383 1.68933 1.54415 1.96302 1.93069 1.81691 1.48504 1.97022 0.92107 0.74459 0.80737 0.76465 0.78873 0.75205 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.06 9.50 21.45 0.20 -47.85 16 2 C 0.01 0.74 5.20 84.65 0.44 1.18 16 3 Si 0.98 39.37 29.54 68.60 2.03 41.39 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.29 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 7 C -0.56 -27.46 8.46 25.60 0.22 -27.24 16 8 H 0.10 4.29 7.74 -2.91 -0.02 4.27 16 9 C 0.25 12.43 2.21 44.25 0.10 12.53 16 10 H 0.05 2.81 7.58 -2.39 -0.02 2.79 16 11 N -0.69 -27.28 4.95 -448.66 -2.22 -29.50 16 12 C 0.54 22.14 7.33 86.88 0.64 22.77 16 13 O -0.57 -28.29 15.01 -3.76 -0.06 -28.35 16 14 C -0.09 -2.78 5.90 -19.91 -0.12 -2.89 16 15 C -0.12 -2.55 9.61 22.69 0.22 -2.33 16 16 C 0.12 1.98 11.16 84.72 0.95 2.93 16 17 N -0.47 -10.08 10.26 -185.20 -1.90 -11.98 16 18 C 0.19 5.14 6.75 41.86 0.28 5.42 16 19 C 0.21 5.59 7.86 136.54 1.07 6.66 16 20 N -0.50 -14.82 10.85 -189.37 -2.05 -16.87 16 21 C -0.06 -1.15 11.84 83.67 0.99 -0.16 16 22 C -0.01 -0.11 12.03 83.19 1.00 0.89 16 23 N -0.53 -9.07 6.18 -187.29 -1.16 -10.22 16 24 H 0.44 4.97 8.96 -92.71 -0.83 4.14 16 25 C -0.09 -3.04 9.29 22.88 0.21 -2.83 16 26 C 0.41 21.31 2.81 71.98 0.20 21.51 16 27 F -0.20 -9.62 16.94 44.97 0.76 -8.86 16 28 F -0.15 -8.39 12.91 44.97 0.58 -7.81 16 29 F -0.22 -11.58 15.67 44.97 0.70 -10.87 16 30 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.42 12.95 6.67 -92.71 -0.62 12.33 16 32 H 0.18 2.58 6.53 -2.91 -0.02 2.57 16 33 H 0.22 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.19 2.85 8.06 -2.91 -0.02 2.82 16 35 H 0.23 0.62 8.06 -2.91 -0.02 0.59 16 36 H 0.13 5.00 7.51 -2.91 -0.02 4.97 16 Total: -1.00 -75.58 331.07 2.84 -72.74 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -0.25 Total: 19.75 kcal Atomic # 6 Polarization: 32.24 SS G_CDS: 6.20 Total: 38.44 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -7.13 Total: -116.43 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.06 Total: -28.35 kcal Atomic # 9 Polarization: -29.59 SS G_CDS: 2.05 Total: -27.55 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.39 kcal Total: -75.58 2.84 -72.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412646670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.222 kcal (2) G-P(sol) polarization free energy of solvation -75.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds