Wall clock time and date at job start Sat Apr 11 2020 05:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86805 * 120.00115 * 2 1 4 4 H 1.48495 * 109.47237 * 87.22178 * 3 2 1 5 5 H 1.48498 * 109.47138 * 207.22264 * 3 2 1 6 6 H 1.48504 * 109.46514 * 327.22090 * 3 2 1 7 7 C 1.40279 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99787 * 10.50571 * 7 2 1 9 9 C 1.40885 * 119.99934 * 190.51200 * 7 2 1 10 10 C 1.40714 * 120.33020 * 36.32229 * 9 7 2 11 11 C 1.37596 * 119.88143 * 179.97438 * 10 9 7 12 12 C 1.38827 * 120.57166 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67436 * 0.02562 * 12 11 10 14 14 C 1.39227 * 120.09019 * 359.69359 * 13 12 11 15 15 C 1.47437 * 120.27694 * 180.27968 * 14 13 12 16 16 O 1.21607 * 119.99890 * 175.70774 * 15 14 13 17 17 N 1.34775 * 120.00283 * 355.71167 * 15 14 13 18 18 C 1.46500 * 119.99983 * 180.02562 * 17 15 14 19 19 C 1.50705 * 109.47108 * 179.97438 * 18 17 15 20 20 N 1.30826 * 125.96051 * 275.02555 * 19 18 17 21 21 C 1.33240 * 109.82993 * 179.97438 * 20 19 18 22 22 C 1.50698 * 125.52953 * 180.02562 * 21 20 19 23 23 F 1.39895 * 109.47166 * 105.00201 * 22 21 20 24 24 F 1.39908 * 109.47190 * 224.99913 * 22 21 20 25 25 F 1.39894 * 109.47183 * 344.99932 * 22 21 20 26 26 N 1.30722 * 108.94445 * 0.02562 * 21 20 19 27 27 N 1.34428 * 125.96107 * 94.71538 * 19 18 17 28 28 H 0.97007 * 126.82201 * 0.02562 * 27 19 18 29 29 H 0.96995 * 120.00424 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.05633 * 359.95638 * 10 9 7 31 31 H 1.08000 * 119.71122 * 180.02562 * 11 10 9 32 32 H 1.08002 * 119.66173 * 179.97438 * 12 11 10 33 33 H 1.08002 * 119.94745 * 179.97438 * 13 12 11 34 34 H 0.97001 * 119.99734 * 359.97438 * 17 15 14 35 35 H 1.09001 * 109.46722 * 299.99508 * 18 17 15 36 36 H 1.09001 * 109.47263 * 59.99392 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4291 2.0804 1.3984 5 1 3.5660 1.4239 -0.6405 6 1 1.4683 2.6349 -0.7581 7 6 2.0077 -1.2149 0.0005 8 1 1.4812 -2.1423 -0.1696 9 6 3.3988 -1.2250 0.2231 10 6 3.9796 -0.3209 1.1316 11 6 5.3392 -0.3392 1.3423 12 6 6.1466 -1.2431 0.6653 13 6 5.6008 -2.1407 -0.2330 14 6 4.2278 -2.1504 -0.4632 15 6 3.6405 -3.1103 -1.4159 16 8 2.4338 -3.1676 -1.5552 17 7 4.4409 -3.9242 -2.1322 18 6 3.8574 -4.8775 -3.0792 19 6 4.9585 -5.6610 -3.7462 20 7 5.6368 -5.2878 -4.8008 21 6 6.5315 -6.2231 -5.1171 22 6 7.4989 -6.1552 -6.2706 23 9 8.7813 -5.8736 -5.7877 24 9 7.5122 -7.3831 -6.9409 25 9 7.1011 -5.1459 -7.1539 26 7 6.4340 -7.2092 -4.2645 27 7 5.4191 -6.8628 -3.3578 28 1 5.1101 -7.3875 -2.6027 29 1 -0.4850 0.8400 -0.0004 30 1 3.3594 0.3863 1.6623 31 1 5.7821 0.3556 2.0405 32 1 7.2121 -1.2443 0.8416 33 1 6.2399 -2.8385 -0.7537 34 1 5.4035 -3.8783 -2.0213 35 1 3.1964 -5.5609 -2.5460 36 1 3.2877 -4.3366 -3.8349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412848933.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:58 Heat of formation + Delta-G solvation = -68.668550 kcal Electronic energy + Delta-G solvation = -28185.163347 eV Core-core repulsion = 23449.469043 eV Total energy + Delta-G solvation = -4735.694304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.52337 -48.06842 -47.99883 -42.93777 -39.24521 -37.20696 -34.92830 -33.75142 -33.45523 -32.20074 -30.56054 -30.27454 -27.75259 -26.98967 -25.30981 -22.72802 -22.33169 -21.66745 -21.02897 -19.83473 -19.15398 -18.95416 -18.54462 -17.85604 -17.60952 -16.88927 -16.36129 -15.45019 -15.36789 -14.86273 -14.81944 -14.76564 -14.47099 -14.42583 -14.19137 -14.13861 -14.13103 -13.78894 -13.60364 -13.19462 -12.90022 -12.69638 -12.57213 -12.44162 -12.01733 -11.57178 -11.04249 -11.01580 -10.83993 -10.80849 -10.57710 -10.49942 -10.25035 -9.88736 -9.33637 -8.80269 -8.67454 -7.92212 -7.69085 -6.99186 -4.58466 0.67823 1.51700 1.84938 1.98166 2.16972 2.52370 3.00329 3.03694 3.13007 3.23961 3.39165 3.63274 3.81772 3.90051 3.91292 3.94629 4.32963 4.49665 5.02216 5.26921 5.32957 5.35422 5.45172 5.68559 5.82824 5.95977 6.26044 6.31292 6.41454 6.64513 6.71274 7.00058 7.12360 7.19944 7.29154 7.49083 7.64124 7.91279 8.02249 8.37182 8.53187 8.75260 9.10676 9.97294 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.017959 B = 0.002599 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.710324 B =10769.901520 C =11175.523695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.079 3.921 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.241 1.241 6 H -0.288 1.288 7 C -0.400 4.400 8 H 0.125 0.875 9 C 0.118 3.882 10 C -0.224 4.224 11 C -0.064 4.064 12 C -0.253 4.253 13 C -0.039 4.039 14 C -0.252 4.252 15 C 0.567 3.433 16 O -0.521 6.521 17 N -0.746 5.746 18 C 0.203 3.797 19 C 0.295 3.705 20 N -0.487 5.487 21 C 0.140 3.860 22 C 0.577 3.423 23 F -0.161 7.161 24 F -0.161 7.161 25 F -0.150 7.150 26 N -0.249 5.249 27 N -0.451 5.451 28 H 0.453 0.547 29 H 0.288 0.712 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.396 0.604 35 H 0.095 0.905 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.016 -10.659 -7.061 16.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.165 1.165 6 H -0.215 1.215 7 C -0.426 4.426 8 H 0.142 0.858 9 C 0.113 3.887 10 C -0.242 4.242 11 C -0.082 4.082 12 C -0.273 4.273 13 C -0.058 4.058 14 C -0.257 4.257 15 C 0.361 3.639 16 O -0.398 6.398 17 N -0.405 5.405 18 C 0.076 3.924 19 C 0.016 3.984 20 N -0.215 5.215 21 C -0.145 4.145 22 C 0.519 3.481 23 F -0.142 7.142 24 F -0.142 7.142 25 F -0.131 7.131 26 N -0.081 5.081 27 N -0.171 5.171 28 H 0.302 0.698 29 H 0.099 0.901 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.231 0.769 35 H 0.113 0.887 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.242 -10.920 -7.464 16.728 hybrid contribution 0.665 0.463 0.493 0.949 sum 10.907 -10.457 -6.971 16.640 Atomic orbital electron populations 1.69556 1.08240 1.30541 1.32879 1.26394 0.94883 1.01740 0.91192 0.86391 0.81413 0.79723 0.79257 1.19378 1.16456 1.21466 1.20204 0.90830 0.96628 1.34984 0.85795 1.17519 0.93112 0.89440 0.88658 1.21172 0.94720 1.04863 1.03491 1.20758 0.93728 0.96585 0.97179 1.20296 0.97955 1.03055 1.05952 1.20751 0.93456 0.96044 0.95540 1.19241 0.92721 1.07199 1.06522 1.18361 0.86069 0.79652 0.79779 1.90757 1.14011 1.68173 1.66863 1.45984 1.10502 1.40279 1.43690 1.19640 0.88559 0.91196 0.92994 1.24664 0.96429 0.85686 0.91645 1.70382 1.08198 1.28312 1.14601 1.23782 0.99803 0.92023 0.98882 1.16253 0.77778 0.74561 0.79482 1.93277 1.39554 1.93387 1.87965 1.93270 1.96365 1.43413 1.81172 1.93291 1.90465 1.60133 1.69211 1.78027 1.06472 1.21091 1.02505 1.48167 1.26880 1.16905 1.25187 0.69827 0.90110 0.87675 0.88472 0.88478 0.88903 0.76906 0.88727 0.87268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.61 13.92 55.56 0.77 -19.84 16 2 C 0.08 2.02 5.47 -17.30 -0.09 1.93 16 3 Si 0.91 19.99 24.51 -169.99 -4.17 15.82 16 4 H -0.27 -5.62 6.76 56.52 0.38 -5.24 16 5 H -0.24 -5.47 6.72 56.52 0.38 -5.09 16 6 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.40 -10.64 8.31 -37.81 -0.31 -10.95 16 8 H 0.12 3.62 5.96 -52.49 -0.31 3.30 16 9 C 0.12 2.86 5.03 -106.54 -0.54 2.33 16 10 C -0.22 -5.04 7.00 -38.88 -0.27 -5.31 16 11 C -0.06 -1.27 10.01 -39.60 -0.40 -1.66 16 12 C -0.25 -4.74 10.03 -39.37 -0.39 -5.14 16 13 C -0.04 -0.73 9.52 -39.22 -0.37 -1.10 16 14 C -0.25 -5.49 5.92 -104.37 -0.62 -6.11 16 15 C 0.57 11.51 7.72 -12.51 -0.10 11.42 16 16 O -0.52 -12.40 13.54 5.27 0.07 -12.33 16 17 N -0.75 -11.05 5.50 -62.56 -0.34 -11.39 16 18 C 0.20 2.41 6.30 -5.19 -0.03 2.37 16 19 C 0.29 3.23 7.61 -155.70 -1.18 2.05 16 20 N -0.49 -6.35 11.00 -8.16 -0.09 -6.44 16 21 C 0.14 1.72 7.40 -156.85 -1.16 0.56 16 22 C 0.58 6.42 3.57 36.00 0.13 6.55 16 23 F -0.16 -1.77 17.30 2.25 0.04 -1.73 16 24 F -0.16 -1.70 17.30 2.25 0.04 -1.66 16 25 F -0.15 -1.74 17.16 2.25 0.04 -1.70 16 26 N -0.25 -2.82 12.80 32.42 0.41 -2.41 16 27 N -0.45 -4.06 7.45 32.62 0.24 -3.82 16 28 H 0.45 2.47 8.96 -182.33 -1.63 0.84 16 29 H 0.29 6.76 8.29 -40.82 -0.34 6.42 16 30 H 0.11 2.34 5.00 -52.49 -0.26 2.08 16 31 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.09 1.41 6.42 -52.49 -0.34 1.07 16 34 H 0.40 5.25 6.51 -40.82 -0.27 4.98 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 328.53 15.07 4.95 4.95 Total: -1.00 -30.08 328.53 -7.06 -37.14 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -3.68 Total: 6.49 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -5.35 Total: -3.09 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 1.00 Total: -43.89 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.07 Total: -12.33 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.12 Total: -5.09 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.17 Total: 15.82 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.08 -7.06 -37.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412848933.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.531 kcal (2) G-P(sol) polarization free energy of solvation -30.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds