Wall clock time and date at job start Sat Apr 11 2020 05:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 11 11 N 1.46500 * 109.47517 * 180.02562 * 9 7 2 12 12 C 1.34774 * 120.00106 * 205.00289 * 11 9 7 13 13 O 1.21551 * 119.99870 * 359.97438 * 12 11 9 14 14 C 1.47867 * 119.99823 * 179.97438 * 12 11 9 15 15 C 1.39650 * 120.08522 * 359.71759 * 14 12 11 16 16 C 1.38023 * 120.09320 * 179.79080 * 15 14 12 17 17 C 1.38160 * 120.27194 * 0.46549 * 16 15 14 18 18 C 1.39405 * 120.17403 * 359.79151 * 17 16 15 19 19 C 1.48422 * 120.05343 * 179.97438 * 18 17 16 20 20 N 1.33978 * 125.64756 * 359.97367 * 19 18 17 21 21 C 1.30675 * 109.77727 * 179.97438 * 20 19 18 22 22 N 1.34518 * 108.29628 * 0.02562 * 21 20 19 23 23 H 0.97004 * 126.74298 * 180.02562 * 22 21 20 24 24 N 1.31483 * 125.65034 * 179.67379 * 19 18 17 25 25 C 1.39096 * 119.89871 * 359.97438 * 18 17 16 26 26 C 1.53001 * 109.46867 * 300.00079 * 9 7 2 27 27 F 1.39895 * 109.47206 * 60.00267 * 26 9 7 28 28 F 1.39904 * 109.46963 * 179.97438 * 26 9 7 29 29 F 1.39898 * 109.47432 * 299.99850 * 26 9 7 30 30 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 31 31 H 0.97003 * 120.00040 * 24.98933 * 11 9 7 32 32 H 1.08004 * 119.95662 * 0.02562 * 15 14 12 33 33 H 1.08002 * 119.86144 * 180.21828 * 16 15 14 34 34 H 1.07998 * 119.91206 * 179.76256 * 17 16 15 35 35 H 1.08005 * 125.85302 * 180.02562 * 21 20 19 36 36 H 1.08005 * 120.13583 * 179.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6239 -2.5567 -0.8903 11 7 2.2028 -3.6128 -0.0005 12 6 1.8366 -4.8123 -0.4939 13 8 0.7163 -4.9704 -0.9383 14 6 2.7976 -5.9361 -0.4943 15 6 4.0869 -5.7549 0.0105 16 6 4.9827 -6.8049 0.0141 17 6 4.6133 -8.0372 -0.4897 18 6 3.3308 -8.2292 -1.0013 19 6 2.9370 -9.5540 -1.5423 20 7 3.7200 -10.6399 -1.5954 21 6 3.0614 -11.6343 -2.1290 22 7 1.8240 -11.2050 -2.4358 23 1 1.1138 -11.7250 -2.8436 24 7 1.7602 -9.8580 -2.0438 25 6 2.4208 -7.1773 -1.0040 26 6 0.3718 -2.5804 1.2491 27 9 -0.5373 -1.5171 1.2496 28 9 -0.3283 -3.7917 1.2488 29 9 1.1764 -2.5066 2.3911 30 1 -0.4850 0.8401 0.0004 31 1 3.0967 -3.4867 0.3543 32 1 4.3824 -4.7927 0.4022 33 1 5.9778 -6.6615 0.4087 34 1 5.3201 -8.8538 -0.4875 35 1 3.4447 -12.6303 -2.2953 36 1 1.4263 -7.3217 -1.3998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413608893.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:03 Heat of formation + Delta-G solvation = -55.792765 kcal Electronic energy + Delta-G solvation = -28914.782406 eV Core-core repulsion = 24179.646438 eV Total energy + Delta-G solvation = -4735.135968 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.33729 -45.99128 -45.60243 -42.30572 -39.78294 -37.99902 -34.72790 -33.48014 -32.60962 -32.05506 -31.13482 -30.08139 -28.26178 -24.62649 -24.06653 -23.96264 -22.51132 -21.34672 -20.92305 -19.67464 -18.77645 -17.80965 -16.95754 -16.76580 -16.61826 -16.01590 -15.87250 -15.72672 -15.29553 -15.23075 -14.84491 -14.25830 -14.10390 -13.87725 -13.62116 -13.10369 -12.91667 -12.65346 -12.46512 -12.41751 -12.38446 -12.26812 -11.98586 -11.81711 -11.75034 -11.28583 -11.17784 -10.87513 -10.82817 -10.68858 -10.41674 -10.36142 -10.23729 -9.68996 -9.35653 -8.95437 -8.72942 -8.67333 -8.27828 -6.23964 -4.48439 0.67348 1.10979 1.55150 2.35135 2.65402 3.20027 3.24830 3.26419 3.35452 3.58429 3.84007 4.07046 4.21085 4.32654 4.57770 4.62579 4.90269 4.93020 4.94970 5.11949 5.26384 5.47379 5.62672 5.83647 5.86846 5.88597 5.91020 6.01031 6.20501 6.33638 6.34986 6.41704 6.71718 6.78360 6.93463 7.13786 7.45540 7.62210 7.74473 8.27699 8.48354 8.82864 9.19345 10.67667 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.021256 B = 0.002790 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.976431 B =10035.071681 C =10580.388983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.283 1.283 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.554 4.554 8 H 0.078 0.922 9 C 0.245 3.755 10 H 0.087 0.913 11 N -0.705 5.705 12 C 0.548 3.452 13 O -0.529 6.529 14 C -0.126 4.126 15 C -0.069 4.069 16 C -0.131 4.131 17 C -0.057 4.057 18 C -0.032 4.032 19 C 0.274 3.726 20 N -0.536 5.536 21 C 0.262 3.738 22 N -0.484 5.484 23 H 0.443 0.557 24 N -0.298 5.298 25 C -0.026 4.026 26 C 0.417 3.583 27 F -0.136 7.136 28 F -0.217 7.217 29 F -0.209 7.209 30 H 0.269 0.731 31 H 0.398 0.602 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.225 0.775 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.932 -18.714 -2.431 20.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.209 1.209 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.591 4.591 8 H 0.096 0.904 9 C 0.140 3.860 10 H 0.105 0.895 11 N -0.355 5.355 12 C 0.334 3.666 13 O -0.406 6.406 14 C -0.129 4.129 15 C -0.088 4.088 16 C -0.149 4.149 17 C -0.077 4.077 18 C -0.035 4.035 19 C -0.005 4.005 20 N -0.264 5.264 21 C -0.037 4.037 22 N -0.203 5.203 23 H 0.289 0.711 24 N -0.127 5.127 25 C -0.047 4.047 26 C 0.360 3.640 27 F -0.118 7.118 28 F -0.199 7.199 29 F -0.191 7.191 30 H 0.080 0.920 31 H 0.233 0.767 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.241 0.759 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.656 -18.191 -2.666 19.916 hybrid contribution 0.221 0.159 0.157 0.314 sum 7.877 -18.032 -2.509 19.836 Atomic orbital electron populations 1.70393 1.05876 1.27524 1.43422 1.25083 0.95160 1.00129 0.94003 0.86260 0.79335 0.81268 0.78927 1.20877 1.19790 1.19755 1.20831 0.93765 0.88062 1.56403 0.90431 1.19754 0.88731 0.85675 0.91860 0.89534 1.45996 1.17248 1.10416 1.61807 1.18225 0.87062 0.82719 0.78604 1.90781 1.20680 1.82932 1.46211 1.20029 0.94883 0.94736 1.03238 1.21572 0.92229 0.99497 0.95520 1.21035 1.00163 0.92458 1.01284 1.21321 0.94606 0.97592 0.94227 1.17309 0.94971 0.88030 1.03210 1.22286 0.87418 0.93883 0.96937 1.70495 1.33584 0.98909 1.23415 1.26085 0.82964 1.00239 0.94417 1.48150 1.13847 1.09546 1.48745 0.71101 1.78365 1.21148 0.92035 1.21157 1.21300 0.99607 0.90110 0.93674 1.23117 0.80890 0.72842 0.87101 1.93403 1.68371 1.53781 1.96199 1.93076 1.81441 1.48410 1.96967 1.92988 1.74382 1.96186 1.55529 0.92021 0.76677 0.84843 0.84737 0.84469 0.75925 0.83786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.99 9.50 55.43 0.53 -22.46 16 2 C 0.07 1.69 5.20 -17.82 -0.09 1.60 16 3 Si 0.92 19.96 29.54 -169.99 -5.02 14.94 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.55 -14.03 8.46 -34.44 -0.29 -14.32 16 8 H 0.08 1.83 7.74 -52.49 -0.41 1.42 16 9 C 0.25 6.11 2.21 -69.08 -0.15 5.96 16 10 H 0.09 2.41 7.58 -51.93 -0.39 2.02 16 11 N -0.70 -14.54 4.93 -55.87 -0.28 -14.82 16 12 C 0.55 11.26 7.31 -12.32 -0.09 11.17 16 13 O -0.53 -12.80 14.91 5.32 0.08 -12.72 16 14 C -0.13 -2.06 5.87 -105.01 -0.62 -2.67 16 15 C -0.07 -0.88 9.54 -39.13 -0.37 -1.26 16 16 C -0.13 -1.41 10.02 -39.69 -0.40 -1.80 16 17 C -0.06 -0.66 9.68 -39.18 -0.38 -1.04 16 18 C -0.03 -0.45 5.87 -104.95 -0.62 -1.07 16 19 C 0.27 3.71 7.77 -156.63 -1.22 2.50 16 20 N -0.54 -6.07 10.81 -12.38 -0.13 -6.21 16 21 C 0.26 1.85 13.11 -90.71 -1.19 0.66 16 22 N -0.48 -3.87 7.44 29.52 0.22 -3.65 16 23 H 0.44 1.76 8.96 -182.34 -1.63 0.13 16 24 N -0.30 -3.96 12.42 32.10 0.40 -3.56 16 25 C -0.03 -0.41 9.22 -38.84 -0.36 -0.77 16 26 C 0.42 10.78 2.81 37.16 0.10 10.89 16 27 F -0.14 -3.80 12.91 2.25 0.03 -3.77 16 28 F -0.22 -5.62 15.67 2.25 0.04 -5.58 16 29 F -0.21 -5.18 16.94 2.25 0.04 -5.14 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.40 6.94 6.57 -40.82 -0.27 6.67 16 32 H 0.13 1.48 6.39 -52.48 -0.34 1.14 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.14 1.37 7.82 -52.49 -0.41 0.96 16 35 H 0.22 0.29 8.06 -52.48 -0.42 -0.13 16 36 H 0.14 2.50 7.42 -52.48 -0.39 2.11 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -34.61 330.38 -8.61 -43.23 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -3.82 Total: 4.92 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: -5.67 Total: 9.84 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.74 Total: -50.70 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.08 Total: -12.72 kcal Atomic # 9 Polarization: -14.59 SS G_CDS: 0.10 Total: -14.49 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.61 -8.61 -43.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413608893.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.565 kcal (2) G-P(sol) polarization free energy of solvation -34.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds