Wall clock time and date at job start Sat Apr 11 2020 05:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 11 11 N 1.46500 * 109.47517 * 180.02562 * 9 7 2 12 12 C 1.34774 * 120.00106 * 205.00289 * 11 9 7 13 13 O 1.21551 * 119.99870 * 359.97438 * 12 11 9 14 14 C 1.47867 * 119.99823 * 179.97438 * 12 11 9 15 15 C 1.39650 * 120.08522 * 359.71759 * 14 12 11 16 16 C 1.38023 * 120.09320 * 179.79080 * 15 14 12 17 17 C 1.38160 * 120.27194 * 0.46549 * 16 15 14 18 18 C 1.39405 * 120.17403 * 359.79151 * 17 16 15 19 19 C 1.48422 * 120.05343 * 179.97438 * 18 17 16 20 20 N 1.33978 * 125.64756 * 359.97367 * 19 18 17 21 21 C 1.30675 * 109.77727 * 179.97438 * 20 19 18 22 22 N 1.34518 * 108.29628 * 0.02562 * 21 20 19 23 23 H 0.97004 * 126.74298 * 180.02562 * 22 21 20 24 24 N 1.31483 * 125.65034 * 179.67379 * 19 18 17 25 25 C 1.39096 * 119.89871 * 359.97438 * 18 17 16 26 26 C 1.53001 * 109.46867 * 300.00079 * 9 7 2 27 27 F 1.39895 * 109.47206 * 60.00267 * 26 9 7 28 28 F 1.39904 * 109.46963 * 179.97438 * 26 9 7 29 29 F 1.39898 * 109.47432 * 299.99850 * 26 9 7 30 30 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 31 31 H 0.97003 * 120.00040 * 24.98933 * 11 9 7 32 32 H 1.08004 * 119.95662 * 0.02562 * 15 14 12 33 33 H 1.08002 * 119.86144 * 180.21828 * 16 15 14 34 34 H 1.07998 * 119.91206 * 179.76256 * 17 16 15 35 35 H 1.08005 * 125.85302 * 180.02562 * 21 20 19 36 36 H 1.08005 * 120.13583 * 179.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6239 -2.5567 -0.8903 11 7 2.2028 -3.6128 -0.0005 12 6 1.8366 -4.8123 -0.4939 13 8 0.7163 -4.9704 -0.9383 14 6 2.7976 -5.9361 -0.4943 15 6 4.0869 -5.7549 0.0105 16 6 4.9827 -6.8049 0.0141 17 6 4.6133 -8.0372 -0.4897 18 6 3.3308 -8.2292 -1.0013 19 6 2.9370 -9.5540 -1.5423 20 7 3.7200 -10.6399 -1.5954 21 6 3.0614 -11.6343 -2.1290 22 7 1.8240 -11.2050 -2.4358 23 1 1.1138 -11.7250 -2.8436 24 7 1.7602 -9.8580 -2.0438 25 6 2.4208 -7.1773 -1.0040 26 6 0.3718 -2.5804 1.2491 27 9 -0.5373 -1.5171 1.2496 28 9 -0.3283 -3.7917 1.2488 29 9 1.1764 -2.5066 2.3911 30 1 -0.4850 0.8401 0.0004 31 1 3.0967 -3.4867 0.3543 32 1 4.3824 -4.7927 0.4022 33 1 5.9778 -6.6615 0.4087 34 1 5.3201 -8.8538 -0.4875 35 1 3.4447 -12.6303 -2.2953 36 1 1.4263 -7.3217 -1.3998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413608893.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:02 Heat of formation + Delta-G solvation = -78.729332 kcal Electronic energy + Delta-G solvation = -28915.777010 eV Core-core repulsion = 24179.646438 eV Total energy + Delta-G solvation = -4736.130572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.43980 -48.07641 -47.74572 -43.06088 -41.17477 -39.33011 -36.58076 -34.69555 -34.12111 -32.90051 -32.32910 -31.06051 -30.01531 -26.62697 -25.28469 -25.01227 -23.58197 -22.75899 -22.15941 -21.12248 -19.75599 -19.14238 -18.91381 -18.67987 -18.53061 -17.64541 -17.16827 -16.81799 -16.50750 -16.39302 -16.26112 -15.80008 -15.41001 -15.11206 -14.98833 -14.86723 -14.62203 -14.49654 -14.38195 -14.28401 -14.04690 -13.89505 -13.73234 -13.17721 -13.06425 -12.81022 -12.72966 -12.59729 -12.33416 -12.21878 -11.61591 -11.52649 -11.18071 -11.04863 -11.01682 -10.67935 -10.21550 -9.95685 -9.63784 -8.21154 -6.52894 -0.33035 -0.00267 0.83176 1.48129 1.50744 1.59218 1.67791 1.74796 2.05408 2.11294 2.39350 2.51487 2.89955 2.95591 2.97796 3.52269 3.66334 3.78243 3.85743 3.92644 4.02160 4.14610 4.21510 4.25245 4.49736 4.64477 4.88510 4.91882 5.08893 5.13016 5.28950 5.34125 5.38904 5.43456 5.53614 5.63520 5.81401 6.23697 6.51291 6.64652 6.99457 7.14553 7.27030 8.71691 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.021256 B = 0.002790 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.976431 B =10035.071681 C =10580.388983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.014 3.986 3 Si 0.986 3.014 4 H -0.286 1.286 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.563 4.563 8 H 0.097 0.903 9 C 0.252 3.748 10 H 0.047 0.953 11 N -0.696 5.696 12 C 0.545 3.455 13 O -0.578 6.578 14 C -0.148 4.148 15 C -0.064 4.064 16 C -0.112 4.112 17 C -0.043 4.043 18 C -0.040 4.040 19 C 0.256 3.744 20 N -0.562 5.562 21 C 0.283 3.717 22 N -0.475 5.475 23 H 0.459 0.541 24 N -0.347 5.347 25 C -0.043 4.043 26 C 0.413 3.587 27 F -0.150 7.150 28 F -0.221 7.221 29 F -0.201 7.201 30 H 0.269 0.731 31 H 0.415 0.585 32 H 0.154 0.846 33 H 0.181 0.819 34 H 0.161 0.839 35 H 0.283 0.717 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.704 -20.110 -2.007 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.191 4.191 3 Si 0.809 3.191 4 H -0.212 1.212 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.599 4.599 8 H 0.115 0.885 9 C 0.145 3.855 10 H 0.065 0.935 11 N -0.347 5.347 12 C 0.334 3.666 13 O -0.459 6.459 14 C -0.151 4.151 15 C -0.083 4.083 16 C -0.129 4.129 17 C -0.063 4.063 18 C -0.043 4.043 19 C -0.024 4.024 20 N -0.290 5.290 21 C -0.014 4.014 22 N -0.195 5.195 23 H 0.309 0.691 24 N -0.177 5.177 25 C -0.064 4.064 26 C 0.357 3.643 27 F -0.131 7.131 28 F -0.203 7.203 29 F -0.183 7.183 30 H 0.079 0.921 31 H 0.253 0.747 32 H 0.171 0.829 33 H 0.198 0.802 34 H 0.179 0.821 35 H 0.298 0.702 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.456 -19.629 -2.244 22.837 hybrid contribution -0.954 0.375 -0.012 1.025 sum 10.502 -19.254 -2.256 22.047 Atomic orbital electron populations 1.70536 1.07620 1.28292 1.44533 1.26045 0.95901 1.03836 0.93355 0.85173 0.77963 0.76484 0.79504 1.21160 1.18749 1.18597 1.21213 0.94703 0.88058 1.55941 0.88518 1.19364 0.88948 0.87411 0.89813 0.93545 1.45801 1.17314 1.09596 1.62035 1.18931 0.87216 0.83383 0.77117 1.90743 1.23110 1.83732 1.48274 1.19707 0.95728 0.93153 1.06481 1.21809 0.90726 1.01240 0.94556 1.21493 1.01311 0.90896 0.99243 1.21672 0.93629 0.98688 0.92341 1.17487 0.95564 0.87892 1.03359 1.22312 0.87986 0.94444 0.97660 1.70466 1.34294 0.99102 1.25175 1.27191 0.81739 1.01211 0.91293 1.48079 1.15043 1.08019 1.48318 0.69149 1.78265 1.22035 0.94977 1.22432 1.21096 0.99148 0.91115 0.95037 1.23307 0.80874 0.72340 0.87793 1.93377 1.68944 1.54439 1.96316 1.93066 1.81624 1.48587 1.97025 1.92986 1.74035 1.96137 1.55114 0.92136 0.74680 0.82853 0.80204 0.82121 0.70190 0.86774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.11 9.50 21.45 0.20 -48.91 16 2 C 0.01 0.72 5.20 84.66 0.44 1.16 16 3 Si 0.99 40.37 29.54 68.60 2.03 42.40 16 4 H -0.29 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 7 C -0.56 -28.48 8.46 25.60 0.22 -28.26 16 8 H 0.10 4.41 7.74 -2.91 -0.02 4.39 16 9 C 0.25 12.94 2.21 44.24 0.10 13.04 16 10 H 0.05 2.76 7.58 -2.39 -0.02 2.75 16 11 N -0.70 -29.27 4.93 -448.97 -2.22 -31.49 16 12 C 0.54 23.44 7.31 86.79 0.63 24.08 16 13 O -0.58 -30.12 14.91 -3.88 -0.06 -30.18 16 14 C -0.15 -4.93 5.87 -20.12 -0.12 -5.05 16 15 C -0.06 -1.51 9.54 22.56 0.22 -1.30 16 16 C -0.11 -1.96 10.02 22.20 0.22 -1.74 16 17 C -0.04 -0.88 9.68 22.53 0.22 -0.67 16 18 C -0.04 -1.11 5.87 -20.08 -0.12 -1.23 16 19 C 0.26 6.86 7.77 137.48 1.07 7.93 16 20 N -0.56 -11.57 10.81 -193.08 -2.09 -13.66 16 21 C 0.28 3.16 13.11 180.38 2.36 5.52 16 22 N -0.47 -6.93 7.44 -60.52 -0.45 -7.38 16 23 H 0.46 2.98 8.96 -213.10 -1.91 1.07 16 24 N -0.35 -9.41 12.42 -52.35 -0.65 -10.06 16 25 C -0.04 -1.43 9.22 22.75 0.21 -1.22 16 26 C 0.41 22.02 2.81 71.98 0.20 22.22 16 27 F -0.15 -8.61 12.91 44.97 0.58 -8.03 16 28 F -0.22 -11.95 15.67 44.97 0.70 -11.24 16 29 F -0.20 -9.99 16.94 44.97 0.76 -9.22 16 30 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 31 H 0.41 14.14 6.57 -92.71 -0.61 13.53 16 32 H 0.15 2.93 6.39 -2.91 -0.02 2.91 16 33 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.16 2.57 7.82 -2.91 -0.02 2.55 16 35 H 0.28 -0.71 8.06 -2.91 -0.02 -0.73 16 36 H 0.11 4.43 7.42 -2.91 -0.02 4.40 16 Total: -1.00 -80.57 330.38 3.15 -77.42 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -1.32 Total: 15.88 kcal Atomic # 6 Polarization: 28.83 SS G_CDS: 5.65 Total: 34.48 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -5.20 Total: -111.50 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.06 Total: -30.18 kcal Atomic # 9 Polarization: -30.55 SS G_CDS: 2.05 Total: -28.50 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -80.57 3.15 -77.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413608893.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.314 kcal (2) G-P(sol) polarization free energy of solvation -80.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds