Wall clock time and date at job start Sat Apr 11 2020 05:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00030 * 2 1 4 4 H 1.48502 * 109.47033 * 264.80786 * 3 2 1 5 5 H 1.48502 * 109.47083 * 24.80317 * 3 2 1 6 6 H 1.48499 * 109.47269 * 144.80720 * 3 2 1 7 7 C 1.37876 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00080 * 4.88484 * 7 2 1 9 9 C 1.50700 * 120.00049 * 184.88073 * 7 2 1 10 10 H 1.09006 * 109.47263 * 334.94538 * 9 7 2 11 11 N 1.46494 * 109.47515 * 94.94406 * 9 7 2 12 12 C 1.34775 * 120.00494 * 205.00277 * 11 9 7 13 13 O 1.21613 * 119.99630 * 359.97438 * 12 11 9 14 14 C 1.47319 * 120.00251 * 179.97438 * 12 11 9 15 15 C 1.37914 * 126.80473 * 0.13847 * 14 12 11 16 16 N 1.34201 * 107.89365 * 180.24867 * 15 14 12 17 17 H 0.97002 * 125.16157 * 179.79555 * 16 15 14 18 18 N 1.39770 * 109.66643 * 359.76162 * 16 15 14 19 19 C 1.31387 * 109.06978 * 359.97438 * 18 16 15 20 20 C 1.48244 * 126.50910 * 179.97438 * 19 18 16 21 21 C 1.39386 * 119.73037 * 335.01949 * 20 19 18 22 22 C 1.38391 * 119.06083 * 180.23063 * 21 20 19 23 23 C 1.38791 * 118.51597 * 359.53739 * 22 21 20 24 24 C 1.38251 * 119.37564 * 0.44165 * 23 22 21 25 25 N 1.31759 * 120.89655 * 359.80277 * 24 23 22 26 26 C 1.53000 * 109.47148 * 214.94642 * 9 7 2 27 27 F 1.39903 * 109.46943 * 294.93522 * 26 9 7 28 28 F 1.39899 * 109.46985 * 54.93629 * 26 9 7 29 29 F 1.39898 * 109.46849 * 174.93537 * 26 9 7 30 30 H 0.96998 * 119.99788 * 0.02562 * 1 2 3 31 31 H 0.97008 * 119.99753 * 24.99662 * 11 9 7 32 32 H 1.07999 * 126.05181 * 359.97438 * 15 14 12 33 33 H 1.07999 * 120.46725 * 359.96127 * 21 20 19 34 34 H 1.07999 * 120.73917 * 179.72741 * 22 21 20 35 35 H 1.07999 * 120.31242 * 180.21821 * 23 22 21 36 36 H 1.07994 * 119.55427 * 179.76885 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6064 1.9831 -1.3944 5 1 1.3960 2.6819 0.5873 6 1 3.4876 1.4744 0.8069 7 6 2.0045 -1.1940 0.0005 8 1 1.4675 -2.1277 -0.0787 9 6 3.5074 -1.1964 0.1116 10 1 3.9005 -0.2485 -0.2561 11 7 3.8933 -1.3740 1.5136 12 6 5.0873 -0.9229 1.9463 13 8 5.8446 -0.3687 1.1728 14 6 5.4751 -1.1010 3.3564 15 6 4.7318 -1.7072 4.3474 16 7 5.4421 -1.6564 5.4849 17 1 5.1519 -2.0087 6.3409 18 7 6.6636 -1.0194 5.2488 19 6 6.7289 -0.6719 3.9834 20 6 7.8539 0.0274 3.3177 21 6 8.7134 0.8261 4.0700 22 6 9.7561 1.4765 3.4337 23 6 9.9115 1.2990 2.0660 24 6 9.0221 0.4916 1.3815 25 7 8.0345 -0.1123 2.0107 26 6 4.0788 -2.3437 -0.7239 27 9 3.6669 -3.5657 -0.1813 28 9 3.6157 -2.2380 -2.0398 29 9 5.4761 -2.2766 -0.7145 30 1 -0.4850 0.8400 -0.0004 31 1 3.2893 -1.8163 2.1306 32 1 3.7500 -2.1415 4.2299 33 1 8.5651 0.9394 5.1338 34 1 10.4356 2.1055 3.9895 35 1 10.7174 1.7899 1.5407 36 1 9.1381 0.3545 0.3166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413628217.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:07 Heat of formation + Delta-G solvation = -69.634628 kcal Electronic energy + Delta-G solvation = -29933.520916 eV Core-core repulsion = 25197.784720 eV Total energy + Delta-G solvation = -4735.736196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.93688 -46.45856 -46.42035 -41.10601 -39.68541 -38.31557 -34.58678 -32.96270 -32.47176 -32.29372 -30.66855 -30.01877 -28.43938 -24.86894 -24.22185 -23.51898 -22.87916 -21.16037 -20.36926 -19.49495 -18.65207 -17.65581 -17.39699 -16.74862 -16.64095 -16.45116 -15.92182 -15.77660 -15.54496 -14.99836 -14.92797 -14.04234 -13.86376 -13.65980 -13.40860 -13.38720 -13.27701 -13.18891 -12.94210 -12.89166 -12.63632 -12.63607 -12.56952 -12.31761 -11.78949 -11.71481 -11.13515 -11.05276 -10.59274 -10.27316 -10.09494 -9.76499 -9.72603 -9.33587 -8.97230 -8.88667 -8.79342 -8.44979 -8.17067 -6.49421 -4.63489 0.81566 1.41007 1.67016 2.37011 2.59755 3.15262 3.24033 3.35606 3.76720 3.91355 4.04234 4.10462 4.14678 4.23652 4.56709 4.84265 4.90148 4.95240 5.02352 5.13333 5.23058 5.28948 5.30324 5.44140 5.45930 5.61943 5.79362 5.84353 6.06981 6.15327 6.30291 6.47555 6.74809 6.97625 7.04356 7.32782 7.41262 7.91711 8.22621 8.50916 8.56046 9.07601 9.14225 10.59111 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.004486 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.408402 B = 6239.603661 C = 6497.280000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.101 3.899 3 Si 0.865 3.135 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.251 1.251 7 C -0.536 4.536 8 H 0.092 0.908 9 C 0.209 3.791 10 H 0.089 0.911 11 N -0.716 5.716 12 C 0.567 3.433 13 O -0.502 6.502 14 C -0.244 4.244 15 C 0.096 3.904 16 N -0.464 5.464 17 H 0.443 0.557 18 N -0.280 5.280 19 C 0.166 3.834 20 C 0.190 3.810 21 C -0.145 4.145 22 C -0.088 4.088 23 C -0.169 4.169 24 C 0.103 3.897 25 N -0.401 5.401 26 C 0.436 3.564 27 F -0.195 7.195 28 F -0.184 7.184 29 F -0.192 7.192 30 H 0.274 0.726 31 H 0.394 0.606 32 H 0.193 0.807 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.037 0.017 10.013 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.109 4.109 3 Si 0.690 3.310 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.175 1.175 7 C -0.573 4.573 8 H 0.110 0.890 9 C 0.106 3.894 10 H 0.106 0.894 11 N -0.369 5.369 12 C 0.352 3.648 13 O -0.376 6.376 14 C -0.260 4.260 15 C -0.052 4.052 16 N -0.171 5.171 17 H 0.287 0.713 18 N -0.103 5.103 19 C -0.002 4.002 20 C 0.051 3.949 21 C -0.166 4.166 22 C -0.114 4.114 23 C -0.190 4.190 24 C -0.056 4.056 25 N -0.110 5.110 26 C 0.380 3.620 27 F -0.176 7.176 28 F -0.166 7.166 29 F -0.173 7.173 30 H 0.084 0.916 31 H 0.229 0.771 32 H 0.209 0.791 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 13.410 -0.024 10.045 16.755 hybrid contribution -0.045 0.752 0.403 0.855 sum 13.364 0.728 10.448 16.979 Atomic orbital electron populations 1.69862 1.06406 1.28263 1.45091 1.24967 0.94751 0.99188 0.91950 0.86979 0.81025 0.82869 0.80175 1.19094 1.20758 1.17494 1.20737 0.86473 0.96264 1.53852 0.88973 1.19914 0.97449 0.92077 0.80002 0.89373 1.47150 1.17429 1.60452 1.11822 1.17436 0.82027 0.79687 0.85632 1.90839 1.50186 1.41319 1.55262 1.21648 0.95963 1.12285 0.96069 1.23152 0.98085 0.97967 0.86038 1.45851 1.13301 1.47115 1.10848 0.71257 1.77176 1.00738 1.16568 1.15860 1.21300 0.92816 0.96459 0.89667 1.18392 0.91944 0.94921 0.89602 1.22052 0.95547 0.97829 1.01179 1.21430 0.97099 0.98087 0.94738 1.22286 1.01128 1.00302 0.95248 1.22848 0.89332 0.92796 1.00603 1.67968 1.16180 1.19529 1.07333 1.21776 0.75154 0.85216 0.79808 1.93054 1.90331 1.48300 1.85938 1.93097 1.88781 1.96199 1.38517 1.93163 1.31174 1.96503 1.96504 0.91574 0.77118 0.79065 0.84709 0.84859 0.84897 0.82501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.65 13.96 55.43 0.77 -22.88 16 2 C 0.10 2.64 5.47 -17.82 -0.10 2.54 16 3 Si 0.86 20.38 26.99 -169.99 -4.59 15.80 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.25 -6.07 6.82 56.52 0.39 -5.69 16 7 C -0.54 -13.63 8.52 -34.44 -0.29 -13.92 16 8 H 0.09 2.52 8.00 -52.48 -0.42 2.10 16 9 C 0.21 4.87 1.71 -69.09 -0.12 4.75 16 10 H 0.09 2.19 4.73 -51.93 -0.25 1.95 16 11 N -0.72 -14.57 4.90 -56.05 -0.27 -14.85 16 12 C 0.57 11.71 7.46 -12.57 -0.09 11.62 16 13 O -0.50 -11.73 12.25 5.27 0.06 -11.67 16 14 C -0.24 -4.20 6.31 -102.95 -0.65 -4.85 16 15 C 0.10 1.19 11.50 -16.63 -0.19 0.99 16 16 N -0.46 -5.03 7.20 30.81 0.22 -4.81 16 17 H 0.44 2.88 8.96 -182.85 -1.64 1.24 16 18 N -0.28 -4.00 12.53 34.57 0.43 -3.56 16 19 C 0.17 2.79 7.11 -80.57 -0.57 2.22 16 20 C 0.19 3.18 6.62 -82.96 -0.55 2.63 16 21 C -0.14 -1.91 9.75 -39.10 -0.38 -2.29 16 22 C -0.09 -0.95 10.16 -39.32 -0.40 -1.35 16 23 C -0.17 -1.88 10.11 -39.37 -0.40 -2.28 16 24 C 0.10 1.49 11.17 -17.58 -0.20 1.29 16 25 N -0.40 -7.27 7.08 -9.79 -0.07 -7.34 16 26 C 0.44 9.91 2.83 37.16 0.11 10.01 16 27 F -0.19 -4.24 16.93 2.25 0.04 -4.20 16 28 F -0.18 -4.27 16.89 2.25 0.04 -4.23 16 29 F -0.19 -4.38 15.83 2.25 0.04 -4.34 16 30 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.39 6.96 7.55 -40.82 -0.31 6.65 16 32 H 0.19 1.66 7.48 -52.49 -0.39 1.27 16 33 H 0.14 1.55 8.04 -52.49 -0.42 1.13 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.16 1.98 8.06 -52.49 -0.42 1.55 16 LS Contribution 331.57 15.07 5.00 5.00 Total: -1.00 -33.60 331.57 -6.01 -39.61 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -3.85 Total: 6.11 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: -3.84 Total: 11.36 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 1.08 Total: -53.43 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.06 Total: -11.67 kcal Atomic # 9 Polarization: -12.88 SS G_CDS: 0.11 Total: -12.77 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.59 Total: 15.80 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.60 -6.01 -39.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413628217.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.022 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds